Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02105:02104
Extra
PDB:
ATOM 1 O3' A A2104 117.104 108.575 39.617 1.00 80.87 O
ATOM 2 P C A2105 116.376 107.553 40.636 1.00 80.89 P
ATOM 3 OP1 C A2105 117.179 106.298 40.735 1.00 80.54 O
ATOM 4 OP2 C A2105 114.945 107.467 40.236 1.00 79.50 O
ATOM 5 O5' C A2105 116.448 108.329 42.031 1.00 78.06 O
ATOM 6 C5' C A2105 117.291 107.859 43.105 1.00 74.27 C
ATOM 7 C4' C A2105 117.739 109.013 43.978 1.00 72.08 C
ATOM 8 O4' C A2105 118.539 109.935 43.193 1.00 70.56 O
ATOM 9 C3' C A2105 116.659 109.912 44.557 1.00 71.06 C
ATOM 10 O3' C A2105 116.018 109.361 45.697 1.00 71.37 O
ATOM 11 C2' C A2105 117.445 111.168 44.907 1.00 69.26 C
ATOM 12 O2' C A2105 118.174 111.065 46.114 1.00 69.64 O
ATOM 13 C1' C A2105 118.406 111.248 43.721 1.00 66.93 C
ATOM 14 N1 C A2105 117.898 112.138 42.666 1.00 63.39 N
ATOM 15 C2 C A2105 118.003 113.523 42.856 1.00 62.66 C
ATOM 16 O2 C A2105 118.530 113.949 43.900 1.00 62.38 O
ATOM 17 N3 C A2105 117.529 114.359 41.906 1.00 61.35 N
ATOM 18 C4 C A2105 116.973 113.862 40.799 1.00 61.32 C
ATOM 19 N4 C A2105 116.518 114.730 39.888 1.00 60.36 N
ATOM 20 C5 C A2105 116.858 112.457 40.575 1.00 60.77 C
ATOM 21 C6 C A2105 117.329 111.640 41.526 1.00 61.61 C
ATOM 22 P A A2106 114.466 109.681 45.956 1.00 70.97 P
ATOM 23 OP1 A A2106 114.092 109.073 47.259 1.00 71.48 O
ATOM 24 OP2 A A2106 113.717 109.293 44.724 1.00 69.87 O
ATOM 25 O5' A A2106 114.437 111.270 46.105 1.00 68.19 O
TER
ATOM 1 O3' G B2103 121.240 111.735 41.315 1.00 87.35 O
ATOM 2 P A B2104 122.097 110.388 41.304 1.00 88.34 P
ATOM 3 OP1 A B2104 121.529 109.492 42.350 1.00 88.59 O
ATOM 4 OP2 A B2104 123.539 110.772 41.368 1.00 88.38 O
ATOM 5 O5' A B2104 121.782 109.775 39.867 1.00 86.17 O
ATOM 6 C5' A B2104 120.834 108.704 39.706 1.00 82.28 C
ATOM 7 C4' A B2104 119.433 109.256 39.595 1.00 80.00 C
ATOM 8 O4' A B2104 119.426 110.378 38.667 1.00 78.79 O
ATOM 9 C3' A B2104 118.394 108.267 39.071 1.00 79.38 C
ATOM 10 O3' A B2104 117.104 108.575 39.617 1.00 80.87 O
ATOM 11 C2' A B2104 118.386 108.603 37.586 1.00 77.93 C
ATOM 12 O2' A B2104 117.216 108.202 36.917 1.00 79.55 O
ATOM 13 C1' A B2104 118.494 110.123 37.641 1.00 77.46 C
ATOM 14 N9 A B2104 118.957 110.742 36.400 1.00 76.66 N
ATOM 15 C8 A B2104 120.223 111.136 36.047 1.00 76.51 C
ATOM 16 N7 A B2104 120.303 111.622 34.832 1.00 76.12 N
ATOM 17 C5 A B2104 119.001 111.552 34.358 1.00 75.84 C
ATOM 18 C6 A B2104 118.418 111.905 33.128 1.00 75.56 C
ATOM 19 N6 A B2104 119.103 112.388 32.095 1.00 76.19 N
ATOM 20 N1 A B2104 117.088 111.728 32.990 1.00 75.42 N
ATOM 21 C2 A B2104 116.402 111.214 34.013 1.00 74.87 C
ATOM 22 N3 A B2104 116.836 110.830 35.208 1.00 75.43 N
ATOM 23 C4 A B2104 118.160 111.028 35.319 1.00 76.16 C
ATOM 24 P C B2105 116.376 107.553 40.636 1.00 80.89 P
ATOM 25 OP1 C B2105 117.179 106.298 40.735 1.00 80.54 O
ATOM 26 OP2 C B2105 114.945 107.467 40.236 1.00 79.50 O
ATOM 27 O5' C B2105 116.448 108.329 42.031 1.00 78.06 O
TER
ATOM 2 P C A2105 116.376 107.553 40.636 1.00 80.89 P
ATOM 3 OP1 C A2105 117.179 106.298 40.735 1.00 80.54 O
ATOM 4 OP2 C A2105 114.945 107.467 40.236 1.00 79.50 O
ATOM 5 O5' C A2105 116.448 108.329 42.031 1.00 78.06 O
ATOM 6 C5' C A2105 117.291 107.859 43.105 1.00 74.27 C
ATOM 7 C4' C A2105 117.739 109.013 43.978 1.00 72.08 C
ATOM 8 O4' C A2105 118.539 109.935 43.193 1.00 70.56 O
ATOM 9 C3' C A2105 116.659 109.912 44.557 1.00 71.06 C
ATOM 10 O3' C A2105 116.018 109.361 45.697 1.00 71.37 O
ATOM 11 C2' C A2105 117.445 111.168 44.907 1.00 69.26 C
ATOM 12 O2' C A2105 118.174 111.065 46.114 1.00 69.64 O
ATOM 13 C1' C A2105 118.406 111.248 43.721 1.00 66.93 C
ATOM 14 N1 C A2105 117.898 112.138 42.666 1.00 63.39 N
ATOM 15 C2 C A2105 118.003 113.523 42.856 1.00 62.66 C
ATOM 16 O2 C A2105 118.530 113.949 43.900 1.00 62.38 O
ATOM 17 N3 C A2105 117.529 114.359 41.906 1.00 61.35 N
ATOM 18 C4 C A2105 116.973 113.862 40.799 1.00 61.32 C
ATOM 19 N4 C A2105 116.518 114.730 39.888 1.00 60.36 N
ATOM 20 C5 C A2105 116.858 112.457 40.575 1.00 60.77 C
ATOM 21 C6 C A2105 117.329 111.640 41.526 1.00 61.61 C
ATOM 22 P A A2106 114.466 109.681 45.956 1.00 70.97 P
ATOM 23 OP1 A A2106 114.092 109.073 47.259 1.00 71.48 O
ATOM 24 OP2 A A2106 113.717 109.293 44.724 1.00 69.87 O
ATOM 25 O5' A A2106 114.437 111.270 46.105 1.00 68.19 O
TER
ATOM 1 O3' G B2103 121.240 111.735 41.315 1.00 87.35 O
ATOM 2 P A B2104 122.097 110.388 41.304 1.00 88.34 P
ATOM 3 OP1 A B2104 121.529 109.492 42.350 1.00 88.59 O
ATOM 4 OP2 A B2104 123.539 110.772 41.368 1.00 88.38 O
ATOM 5 O5' A B2104 121.782 109.775 39.867 1.00 86.17 O
ATOM 6 C5' A B2104 120.834 108.704 39.706 1.00 82.28 C
ATOM 7 C4' A B2104 119.433 109.256 39.595 1.00 80.00 C
ATOM 8 O4' A B2104 119.426 110.378 38.667 1.00 78.79 O
ATOM 9 C3' A B2104 118.394 108.267 39.071 1.00 79.38 C
ATOM 10 O3' A B2104 117.104 108.575 39.617 1.00 80.87 O
ATOM 11 C2' A B2104 118.386 108.603 37.586 1.00 77.93 C
ATOM 12 O2' A B2104 117.216 108.202 36.917 1.00 79.55 O
ATOM 13 C1' A B2104 118.494 110.123 37.641 1.00 77.46 C
ATOM 14 N9 A B2104 118.957 110.742 36.400 1.00 76.66 N
ATOM 15 C8 A B2104 120.223 111.136 36.047 1.00 76.51 C
ATOM 16 N7 A B2104 120.303 111.622 34.832 1.00 76.12 N
ATOM 17 C5 A B2104 119.001 111.552 34.358 1.00 75.84 C
ATOM 18 C6 A B2104 118.418 111.905 33.128 1.00 75.56 C
ATOM 19 N6 A B2104 119.103 112.388 32.095 1.00 76.19 N
ATOM 20 N1 A B2104 117.088 111.728 32.990 1.00 75.42 N
ATOM 21 C2 A B2104 116.402 111.214 34.013 1.00 74.87 C
ATOM 22 N3 A B2104 116.836 110.830 35.208 1.00 75.43 N
ATOM 23 C4 A B2104 118.160 111.028 35.319 1.00 76.16 C
ATOM 24 P C B2105 116.376 107.553 40.636 1.00 80.89 P
ATOM 25 OP1 C B2105 117.179 106.298 40.735 1.00 80.54 O
ATOM 26 OP2 C B2105 114.945 107.467 40.236 1.00 79.50 O
ATOM 27 O5' C B2105 116.448 108.329 42.031 1.00 78.06 O
TER
Atoms:
C2: (118.003,113.523,42.856)
OP1: (117.179,106.298,40.735)
OP2: (114.945,107.467,40.236)
C4: (116.973,113.862,40.799)
O5': (116.448,108.329,42.031)
C3': (116.659,109.912,44.557)
C1': (118.406,111.248,43.721)
O4': (118.539,109.935,43.193)
C5': (117.291,107.859,43.105)
P: (116.376,107.553,40.636)
O2: (118.530,113.949,43.900)
C4': (117.739,109.013,43.978)
C2': (117.445,111.168,44.907)
O2': (118.174,111.065,46.114)
N1: (117.898,112.138,42.666)
N3: (117.529,114.359,41.906)
N4: (116.518,114.730,39.888)
C6: (117.329,111.640,41.526)
C5: (116.858,112.457,40.575)
O3': (116.018,109.361,45.697)
OP1: (117.179,106.298,40.735)
OP2: (114.945,107.467,40.236)
C4: (116.973,113.862,40.799)
O5': (116.448,108.329,42.031)
C3': (116.659,109.912,44.557)
C1': (118.406,111.248,43.721)
O4': (118.539,109.935,43.193)
C5': (117.291,107.859,43.105)
P: (116.376,107.553,40.636)
O2: (118.530,113.949,43.900)
C4': (117.739,109.013,43.978)
C2': (117.445,111.168,44.907)
O2': (118.174,111.065,46.114)
N1: (117.898,112.138,42.666)
N3: (117.529,114.359,41.906)
N4: (116.518,114.730,39.888)
C6: (117.329,111.640,41.526)
C5: (116.858,112.457,40.575)
O3': (116.018,109.361,45.697)
OP1: (121.529,109.492,42.350)
OP2: (123.539,110.772,41.368)
C3': (118.394,108.267,39.071)
C1': (118.494,110.123,37.641)
C5': (120.834,108.704,39.706)
O4': (119.426,110.378,38.667)
C8: (120.223,111.136,36.047)
O2': (117.216,108.202,36.917)
C6: (118.418,111.905,33.128)
C5: (119.001,111.552,34.358)
C4: (118.160,111.028,35.319)
P: (122.097,110.388,41.304)
C4': (119.433,109.256,39.595)
C2': (118.386,108.603,37.586)
C2: (116.402,111.214,34.013)
N1: (117.088,111.728,32.990)
N3: (116.836,110.830,35.208)
N6: (119.103,112.388,32.095)
N7: (120.303,111.622,34.832)
N9: (118.957,110.742,36.400)
O5': (121.782,109.775,39.867)
O3': (117.104,108.575,39.617)
OP2: (123.539,110.772,41.368)
C3': (118.394,108.267,39.071)
C1': (118.494,110.123,37.641)
C5': (120.834,108.704,39.706)
O4': (119.426,110.378,38.667)
C8: (120.223,111.136,36.047)
O2': (117.216,108.202,36.917)
C6: (118.418,111.905,33.128)
C5: (119.001,111.552,34.358)
C4: (118.160,111.028,35.319)
P: (122.097,110.388,41.304)
C4': (119.433,109.256,39.595)
C2': (118.386,108.603,37.586)
C2: (116.402,111.214,34.013)
N1: (117.088,111.728,32.990)
N3: (116.836,110.830,35.208)
N6: (119.103,112.388,32.095)
N7: (120.303,111.622,34.832)
N9: (118.957,110.742,36.400)
O5': (121.782,109.775,39.867)
O3': (117.104,108.575,39.617)
Image (generated by PyMOL):