Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02105:02104
Extra
PDB:
ATOM 1 O3' A A2104 116.705 108.190 39.137 1.00 69.15 O
ATOM 2 P C A2105 115.994 107.122 40.113 1.00 69.17 P
ATOM 3 OP1 C A2105 116.834 105.889 40.184 1.00 69.49 O
ATOM 4 OP2 C A2105 114.577 107.006 39.684 1.00 68.39 O
ATOM 5 O5' C A2105 116.024 107.864 41.528 1.00 66.88 O
ATOM 6 C5' C A2105 116.956 107.469 42.555 1.00 64.55 C
ATOM 7 C4' C A2105 117.473 108.674 43.313 1.00 62.27 C
ATOM 8 O4' C A2105 118.147 109.578 42.402 1.00 60.43 O
ATOM 9 C3' C A2105 116.455 109.587 43.971 1.00 62.00 C
ATOM 10 O3' C A2105 115.949 109.072 45.189 1.00 61.80 O
ATOM 11 C2' C A2105 117.277 110.845 44.215 1.00 61.00 C
ATOM 12 O2' C A2105 118.127 110.758 45.341 1.00 60.87 O
ATOM 13 C1' C A2105 118.128 110.889 42.948 1.00 59.59 C
ATOM 14 N1 C A2105 117.591 111.827 41.949 1.00 58.11 N
ATOM 15 C2 C A2105 117.655 113.209 42.222 1.00 57.62 C
ATOM 16 O2 C A2105 118.144 113.592 43.302 1.00 55.11 O
ATOM 17 N3 C A2105 117.179 114.084 41.306 1.00 58.18 N
ATOM 18 C4 C A2105 116.649 113.632 40.162 1.00 59.57 C
ATOM 19 N4 C A2105 116.187 114.531 39.291 1.00 59.51 N
ATOM 20 C5 C A2105 116.567 112.236 39.864 1.00 58.61 C
ATOM 21 C6 C A2105 117.044 111.379 40.777 1.00 58.23 C
ATOM 22 P A A2106 114.454 109.441 45.633 1.00 61.75 P
ATOM 23 OP1 A A2106 114.268 108.930 47.015 1.00 63.74 O
ATOM 24 OP2 A A2106 113.537 108.995 44.553 1.00 61.27 O
ATOM 25 O5' A A2106 114.449 111.030 45.698 1.00 58.38 O
TER
ATOM 1 O3' G B2103 121.041 111.409 40.916 1.00 73.77 O
ATOM 2 P A B2104 121.849 110.039 40.740 1.00 75.62 P
ATOM 3 OP1 A B2104 121.390 109.103 41.805 1.00 74.32 O
ATOM 4 OP2 A B2104 123.292 110.377 40.626 1.00 76.62 O
ATOM 5 O5' A B2104 121.355 109.499 39.325 1.00 74.24 O
ATOM 6 C5' A B2104 120.430 108.399 39.225 1.00 70.66 C
ATOM 7 C4' A B2104 119.011 108.915 39.166 1.00 68.73 C
ATOM 8 O4' A B2104 118.952 110.093 38.314 1.00 66.74 O
ATOM 9 C3' A B2104 118.001 107.929 38.593 1.00 68.16 C
ATOM 10 O3' A B2104 116.705 108.190 39.137 1.00 69.15 O
ATOM 11 C2' A B2104 117.994 108.334 37.127 1.00 67.52 C
ATOM 12 O2' A B2104 116.844 107.912 36.434 1.00 70.03 O
ATOM 13 C1' A B2104 118.058 109.856 37.251 1.00 66.37 C
ATOM 14 N9 A B2104 118.566 110.518 36.054 1.00 65.36 N
ATOM 15 C8 A B2104 119.854 110.879 35.764 1.00 65.53 C
ATOM 16 N7 A B2104 120.003 111.382 34.566 1.00 65.84 N
ATOM 17 C5 A B2104 118.722 111.366 34.036 1.00 65.20 C
ATOM 18 C6 A B2104 118.211 111.743 32.785 1.00 65.10 C
ATOM 19 N6 A B2104 118.961 112.196 31.783 1.00 65.56 N
ATOM 20 N1 A B2104 116.884 111.622 32.588 1.00 65.71 N
ATOM 21 C2 A B2104 116.134 111.133 33.580 1.00 65.87 C
ATOM 22 N3 A B2104 116.501 110.723 34.788 1.00 65.70 N
ATOM 23 C4 A B2104 117.824 110.866 34.954 1.00 65.24 C
ATOM 24 P C B2105 115.994 107.122 40.113 1.00 69.17 P
ATOM 25 OP1 C B2105 116.834 105.889 40.184 1.00 69.49 O
ATOM 26 OP2 C B2105 114.577 107.006 39.684 1.00 68.39 O
ATOM 27 O5' C B2105 116.024 107.864 41.528 1.00 66.88 O
TER
ATOM 2 P C A2105 115.994 107.122 40.113 1.00 69.17 P
ATOM 3 OP1 C A2105 116.834 105.889 40.184 1.00 69.49 O
ATOM 4 OP2 C A2105 114.577 107.006 39.684 1.00 68.39 O
ATOM 5 O5' C A2105 116.024 107.864 41.528 1.00 66.88 O
ATOM 6 C5' C A2105 116.956 107.469 42.555 1.00 64.55 C
ATOM 7 C4' C A2105 117.473 108.674 43.313 1.00 62.27 C
ATOM 8 O4' C A2105 118.147 109.578 42.402 1.00 60.43 O
ATOM 9 C3' C A2105 116.455 109.587 43.971 1.00 62.00 C
ATOM 10 O3' C A2105 115.949 109.072 45.189 1.00 61.80 O
ATOM 11 C2' C A2105 117.277 110.845 44.215 1.00 61.00 C
ATOM 12 O2' C A2105 118.127 110.758 45.341 1.00 60.87 O
ATOM 13 C1' C A2105 118.128 110.889 42.948 1.00 59.59 C
ATOM 14 N1 C A2105 117.591 111.827 41.949 1.00 58.11 N
ATOM 15 C2 C A2105 117.655 113.209 42.222 1.00 57.62 C
ATOM 16 O2 C A2105 118.144 113.592 43.302 1.00 55.11 O
ATOM 17 N3 C A2105 117.179 114.084 41.306 1.00 58.18 N
ATOM 18 C4 C A2105 116.649 113.632 40.162 1.00 59.57 C
ATOM 19 N4 C A2105 116.187 114.531 39.291 1.00 59.51 N
ATOM 20 C5 C A2105 116.567 112.236 39.864 1.00 58.61 C
ATOM 21 C6 C A2105 117.044 111.379 40.777 1.00 58.23 C
ATOM 22 P A A2106 114.454 109.441 45.633 1.00 61.75 P
ATOM 23 OP1 A A2106 114.268 108.930 47.015 1.00 63.74 O
ATOM 24 OP2 A A2106 113.537 108.995 44.553 1.00 61.27 O
ATOM 25 O5' A A2106 114.449 111.030 45.698 1.00 58.38 O
TER
ATOM 1 O3' G B2103 121.041 111.409 40.916 1.00 73.77 O
ATOM 2 P A B2104 121.849 110.039 40.740 1.00 75.62 P
ATOM 3 OP1 A B2104 121.390 109.103 41.805 1.00 74.32 O
ATOM 4 OP2 A B2104 123.292 110.377 40.626 1.00 76.62 O
ATOM 5 O5' A B2104 121.355 109.499 39.325 1.00 74.24 O
ATOM 6 C5' A B2104 120.430 108.399 39.225 1.00 70.66 C
ATOM 7 C4' A B2104 119.011 108.915 39.166 1.00 68.73 C
ATOM 8 O4' A B2104 118.952 110.093 38.314 1.00 66.74 O
ATOM 9 C3' A B2104 118.001 107.929 38.593 1.00 68.16 C
ATOM 10 O3' A B2104 116.705 108.190 39.137 1.00 69.15 O
ATOM 11 C2' A B2104 117.994 108.334 37.127 1.00 67.52 C
ATOM 12 O2' A B2104 116.844 107.912 36.434 1.00 70.03 O
ATOM 13 C1' A B2104 118.058 109.856 37.251 1.00 66.37 C
ATOM 14 N9 A B2104 118.566 110.518 36.054 1.00 65.36 N
ATOM 15 C8 A B2104 119.854 110.879 35.764 1.00 65.53 C
ATOM 16 N7 A B2104 120.003 111.382 34.566 1.00 65.84 N
ATOM 17 C5 A B2104 118.722 111.366 34.036 1.00 65.20 C
ATOM 18 C6 A B2104 118.211 111.743 32.785 1.00 65.10 C
ATOM 19 N6 A B2104 118.961 112.196 31.783 1.00 65.56 N
ATOM 20 N1 A B2104 116.884 111.622 32.588 1.00 65.71 N
ATOM 21 C2 A B2104 116.134 111.133 33.580 1.00 65.87 C
ATOM 22 N3 A B2104 116.501 110.723 34.788 1.00 65.70 N
ATOM 23 C4 A B2104 117.824 110.866 34.954 1.00 65.24 C
ATOM 24 P C B2105 115.994 107.122 40.113 1.00 69.17 P
ATOM 25 OP1 C B2105 116.834 105.889 40.184 1.00 69.49 O
ATOM 26 OP2 C B2105 114.577 107.006 39.684 1.00 68.39 O
ATOM 27 O5' C B2105 116.024 107.864 41.528 1.00 66.88 O
TER
Atoms:
C2: (117.655,113.209,42.222)
OP1: (116.834,105.889,40.184)
OP2: (114.577,107.006,39.684)
C4: (116.649,113.632,40.162)
O5': (116.024,107.864,41.528)
C3': (116.455,109.587,43.971)
C1': (118.128,110.889,42.948)
O4': (118.147,109.578,42.402)
C5': (116.956,107.469,42.555)
P: (115.994,107.122,40.113)
O2: (118.144,113.592,43.302)
C4': (117.473,108.674,43.313)
C2': (117.277,110.845,44.215)
O2': (118.127,110.758,45.341)
N1: (117.591,111.827,41.949)
N3: (117.179,114.084,41.306)
N4: (116.187,114.531,39.291)
C6: (117.044,111.379,40.777)
C5: (116.567,112.236,39.864)
O3': (115.949,109.072,45.189)
OP1: (116.834,105.889,40.184)
OP2: (114.577,107.006,39.684)
C4: (116.649,113.632,40.162)
O5': (116.024,107.864,41.528)
C3': (116.455,109.587,43.971)
C1': (118.128,110.889,42.948)
O4': (118.147,109.578,42.402)
C5': (116.956,107.469,42.555)
P: (115.994,107.122,40.113)
O2: (118.144,113.592,43.302)
C4': (117.473,108.674,43.313)
C2': (117.277,110.845,44.215)
O2': (118.127,110.758,45.341)
N1: (117.591,111.827,41.949)
N3: (117.179,114.084,41.306)
N4: (116.187,114.531,39.291)
C6: (117.044,111.379,40.777)
C5: (116.567,112.236,39.864)
O3': (115.949,109.072,45.189)
OP1: (121.390,109.103,41.805)
OP2: (123.292,110.377,40.626)
C3': (118.001,107.929,38.593)
C1': (118.058,109.856,37.251)
C5': (120.430,108.399,39.225)
O4': (118.952,110.093,38.314)
C8: (119.854,110.879,35.764)
O2': (116.844,107.912,36.434)
C6: (118.211,111.743,32.785)
C5: (118.722,111.366,34.036)
C4: (117.824,110.866,34.954)
P: (121.849,110.039,40.740)
C4': (119.011,108.915,39.166)
C2': (117.994,108.334,37.127)
C2: (116.134,111.133,33.580)
N1: (116.884,111.622,32.588)
N3: (116.501,110.723,34.788)
N6: (118.961,112.196,31.783)
N7: (120.003,111.382,34.566)
N9: (118.566,110.518,36.054)
O5': (121.355,109.499,39.325)
O3': (116.705,108.190,39.137)
OP2: (123.292,110.377,40.626)
C3': (118.001,107.929,38.593)
C1': (118.058,109.856,37.251)
C5': (120.430,108.399,39.225)
O4': (118.952,110.093,38.314)
C8: (119.854,110.879,35.764)
O2': (116.844,107.912,36.434)
C6: (118.211,111.743,32.785)
C5: (118.722,111.366,34.036)
C4: (117.824,110.866,34.954)
P: (121.849,110.039,40.740)
C4': (119.011,108.915,39.166)
C2': (117.994,108.334,37.127)
C2: (116.134,111.133,33.580)
N1: (116.884,111.622,32.588)
N3: (116.501,110.723,34.788)
N6: (118.961,112.196,31.783)
N7: (120.003,111.382,34.566)
N9: (118.566,110.518,36.054)
O5': (121.355,109.499,39.325)
O3': (116.705,108.190,39.137)
Image (generated by PyMOL):