ClaRNA

Doublet info:

Details

Nucleotide types: CA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3RKF:B10:B9

Extra

PDB:
ATOM 1 O3' A A 9 30.706 -5.289 -30.869 1.00 47.27 O
ATOM 2 P C A 10 29.393 -4.638 -30.204 1.00 53.67 P
ATOM 3 OP1 C A 10 28.703 -3.860 -31.262 1.00 45.06 O
ATOM 4 OP2 C A 10 29.831 -3.934 -28.974 1.00 44.90 O
ATOM 5 O5' C A 10 28.523 -5.915 -29.817 1.00 50.93 O
ATOM 6 C5' C A 10 27.435 -6.328 -30.631 1.00 43.14 C
ATOM 7 C4' C A 10 27.200 -7.816 -30.538 1.00 43.91 C
ATOM 8 O4' C A 10 28.347 -8.535 -31.059 1.00 41.70 O
ATOM 9 C3' C A 10 27.019 -8.384 -29.139 1.00 47.61 C
ATOM 10 O3' C A 10 25.713 -8.178 -28.625 1.00 54.31 O
ATOM 11 C2' C A 10 27.374 -9.854 -29.331 1.00 43.05 C
ATOM 12 O2' C A 10 26.280 -10.564 -29.891 1.00 41.91 O
ATOM 13 C1' C A 10 28.482 -9.769 -30.384 1.00 41.76 C
ATOM 14 N1 C A 10 29.834 -9.842 -29.786 1.00 43.64 N
ATOM 15 C2 C A 10 30.239 -11.051 -29.214 1.00 40.82 C
ATOM 16 O2 C A 10 29.453 -12.008 -29.211 1.00 41.02 O
ATOM 17 N3 C A 10 31.472 -11.149 -28.668 1.00 43.92 N
ATOM 18 C4 C A 10 32.293 -10.099 -28.687 1.00 46.47 C
ATOM 19 N4 C A 10 33.502 -10.242 -28.136 1.00 47.23 N
ATOM 20 C5 C A 10 31.912 -8.854 -29.272 1.00 45.32 C
ATOM 21 C6 C A 10 30.686 -8.772 -29.809 1.00 45.84 C
ATOM 22 P U A 11 25.491 -7.921 -27.053 1.00 49.56 P
ATOM 23 OP1 U A 11 24.098 -7.440 -26.884 1.00 44.11 O
ATOM 24 OP2 U A 11 26.603 -7.059 -26.588 1.00 51.81 O
ATOM 25 O5' U A 11 25.639 -9.380 -26.432 1.00 47.79 O
TER

ATOM 1 O3' A B 8 27.090 -6.888 -35.235 1.00 37.13 O
ATOM 2 P A B 9 28.290 -5.873 -35.579 1.00 39.20 P
ATOM 3 OP1 A B 9 27.670 -4.593 -35.999 1.00 40.49 O
ATOM 4 OP2 A B 9 29.196 -6.567 -36.521 1.00 41.61 O
ATOM 5 O5' A B 9 29.014 -5.684 -34.176 1.00 40.54 O
ATOM 6 C5' A B 9 29.775 -6.735 -33.603 1.00 43.93 C
ATOM 7 C4' A B 9 31.100 -6.238 -33.092 1.00 41.34 C
ATOM 8 O4' A B 9 31.941 -5.846 -34.206 1.00 45.73 O
ATOM 9 C3' A B 9 31.050 -4.998 -32.214 1.00 43.81 C
ATOM 10 O3' A B 9 30.706 -5.289 -30.869 1.00 47.27 O
ATOM 11 C2' A B 9 32.450 -4.421 -32.374 1.00 46.06 C
ATOM 12 O2' A B 9 33.374 -5.121 -31.557 1.00 48.05 O
ATOM 13 C1' A B 9 32.755 -4.755 -33.834 1.00 45.32 C
ATOM 14 N9 A B 9 32.474 -3.624 -34.736 1.00 45.55 N
ATOM 15 C8 A B 9 31.439 -3.481 -35.625 1.00 46.49 C
ATOM 16 N7 A B 9 31.472 -2.356 -36.295 1.00 44.22 N
ATOM 17 C5 A B 9 32.607 -1.717 -35.818 1.00 46.37 C
ATOM 18 C6 A B 9 33.198 -0.481 -36.128 1.00 47.24 C
ATOM 19 N6 A B 9 32.701 0.364 -37.033 1.00 49.51 N
ATOM 20 N1 A B 9 34.330 -0.142 -35.471 1.00 47.48 N
ATOM 21 C2 A B 9 34.824 -0.994 -34.565 1.00 44.97 C
ATOM 22 N3 A B 9 34.359 -2.183 -34.188 1.00 46.15 N
ATOM 23 C4 A B 9 33.236 -2.489 -34.861 1.00 46.24 C
ATOM 24 P C B 10 29.393 -4.638 -30.204 1.00 53.67 P
ATOM 25 OP1 C B 10 28.703 -3.860 -31.262 1.00 45.06 O
ATOM 26 OP2 C B 10 29.831 -3.934 -28.974 1.00 44.90 O
ATOM 27 O5' C B 10 28.523 -5.915 -29.817 1.00 50.93 O
TER

Atoms:
C2: (30.239,-11.051,-29.214)
OP1: (28.703,-3.860,-31.262)
OP2: (29.831,-3.934,-28.974)
C4: (32.293,-10.099,-28.687)
O5': (28.523,-5.915,-29.817)
C3': (27.019,-8.384,-29.139)
C1': (28.482,-9.769,-30.384)
O4': (28.347,-8.535,-31.059)
C5': (27.435,-6.328,-30.631)
P: (29.393,-4.638,-30.204)
O2: (29.453,-12.008,-29.211)
C4': (27.200,-7.816,-30.538)
C2': (27.374,-9.854,-29.331)
O2': (26.280,-10.564,-29.891)
N1: (29.834,-9.842,-29.786)
N3: (31.472,-11.149,-28.668)
N4: (33.502,-10.242,-28.136)
C6: (30.686,-8.772,-29.809)
C5: (31.912,-8.854,-29.272)
O3': (25.713,-8.178,-28.625)
OP1: (27.670,-4.593,-35.999)
OP2: (29.196,-6.567,-36.521)
C3': (31.050,-4.998,-32.214)
C1': (32.755,-4.755,-33.834)
C5': (29.775,-6.735,-33.603)
O4': (31.941,-5.846,-34.206)
C8: (31.439,-3.481,-35.625)
O2': (33.374,-5.121,-31.557)
C6: (33.198,-0.481,-36.128)
C5: (32.607,-1.717,-35.818)
C4: (33.236,-2.489,-34.861)
P: (28.290,-5.873,-35.579)
C4': (31.100,-6.238,-33.092)
C2': (32.450,-4.421,-32.374)
C2: (34.824,-0.994,-34.565)
N1: (34.330,-0.142,-35.471)
N3: (34.359,-2.183,-34.188)
N6: (32.701,0.364,-37.033)
N7: (31.472,-2.356,-36.295)
N9: (32.474,-3.624,-34.736)
O5': (29.014,-5.684,-34.176)
O3': (30.706,-5.289,-30.869)
Image (generated by PyMOL):
PyMOL image
show in jmol