Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A58:A59
Extra
PDB:
ATOM 1 O3' C A 57 -9.603 20.284 3.979 1.00 21.08 O
ATOM 2 P G A 58 -10.799 21.277 3.583 1.00 21.66 P
ATOM 3 OP1 G A 58 -10.178 22.518 3.055 1.00 24.92 O
ATOM 4 OP2 G A 58 -11.696 21.373 4.762 1.00 19.57 O
ATOM 5 O5' G A 58 -11.532 20.490 2.405 1.00 18.58 O
ATOM 6 C5' G A 58 -10.810 20.064 1.260 1.00 18.28 C
ATOM 7 C4' G A 58 -11.613 19.108 0.410 1.00 16.79 C
ATOM 8 O4' G A 58 -11.739 17.828 1.079 1.00 19.51 O
ATOM 9 C3' G A 58 -13.051 19.504 0.121 1.00 18.67 C
ATOM 10 O3' G A 58 -13.163 20.491 -0.890 1.00 21.20 O
ATOM 11 C2' G A 58 -13.685 18.167 -0.251 1.00 20.11 C
ATOM 12 O2' G A 58 -13.374 17.814 -1.590 1.00 24.02 O
ATOM 13 C1' G A 58 -12.948 17.207 0.689 1.00 19.71 C
ATOM 14 N9 G A 58 -13.747 16.907 1.890 1.00 17.76 N
ATOM 15 C8 G A 58 -13.707 17.493 3.133 1.00 16.39 C
ATOM 16 N7 G A 58 -14.594 16.989 3.951 1.00 17.04 N
ATOM 17 C5 G A 58 -15.260 16.029 3.199 1.00 16.85 C
ATOM 18 C6 G A 58 -16.324 15.152 3.535 1.00 20.58 C
ATOM 19 O6 G A 58 -16.919 15.038 4.613 1.00 25.81 O
ATOM 20 N1 G A 58 -16.687 14.347 2.460 1.00 17.35 N
ATOM 21 C2 G A 58 -16.105 14.373 1.217 1.00 18.40 C
ATOM 22 N2 G A 58 -16.592 13.519 0.303 1.00 18.92 N
ATOM 23 N3 G A 58 -15.115 15.182 0.894 1.00 17.01 N
ATOM 24 C4 G A 58 -14.748 15.971 1.926 1.00 17.60 C
ATOM 25 P A A 59 -14.061 21.805 -0.646 1.00 26.37 P
ATOM 26 OP1 A A 59 -14.030 22.592 -1.902 1.00 23.76 O
ATOM 27 OP2 A A 59 -13.580 22.440 0.604 1.00 18.80 O
ATOM 28 O5' A A 59 -15.517 21.200 -0.421 1.00 25.11 O
TER
ATOM 1 O3' G B 58 -13.163 20.491 -0.890 1.00 21.20 O
ATOM 2 P A B 59 -14.061 21.805 -0.646 1.00 26.37 P
ATOM 3 OP1 A B 59 -14.030 22.592 -1.902 1.00 23.76 O
ATOM 4 OP2 A B 59 -13.580 22.440 0.604 1.00 18.80 O
ATOM 5 O5' A B 59 -15.517 21.200 -0.421 1.00 25.11 O
ATOM 6 C5' A B 59 -16.591 22.017 0.019 1.00 21.85 C
ATOM 7 C4' A B 59 -17.899 21.583 -0.595 1.00 23.45 C
ATOM 8 O4' A B 59 -17.883 21.857 -2.016 1.00 20.81 O
ATOM 9 C3' A B 59 -18.221 20.095 -0.492 1.00 21.51 C
ATOM 10 O3' A B 59 -18.828 19.757 0.743 1.00 22.31 O
ATOM 11 C2' A B 59 -19.126 19.849 -1.697 1.00 21.16 C
ATOM 12 O2' A B 59 -20.471 20.202 -1.401 1.00 18.05 O
ATOM 13 C1' A B 59 -18.578 20.849 -2.717 1.00 21.61 C
ATOM 14 N9 A B 59 -17.654 20.228 -3.682 1.00 19.44 N
ATOM 15 C8 A B 59 -16.297 20.415 -3.769 1.00 22.56 C
ATOM 16 N7 A B 59 -15.738 19.750 -4.754 1.00 24.21 N
ATOM 17 C5 A B 59 -16.800 19.094 -5.359 1.00 21.12 C
ATOM 18 C6 A B 59 -16.873 18.231 -6.463 1.00 21.50 C
ATOM 19 N6 A B 59 -15.811 17.862 -7.181 1.00 27.15 N
ATOM 20 N1 A B 59 -18.084 17.750 -6.812 1.00 20.64 N
ATOM 21 C2 A B 59 -19.147 18.119 -6.091 1.00 19.69 C
ATOM 22 N3 A B 59 -19.206 18.924 -5.032 1.00 22.14 N
ATOM 23 C4 A B 59 -17.986 19.386 -4.715 1.00 20.94 C
ATOM 24 P G B 60 -18.286 18.519 1.612 1.00 23.77 P
ATOM 25 OP1 G B 60 -18.913 18.625 2.950 1.00 25.26 O
ATOM 26 OP2 G B 60 -16.804 18.528 1.517 1.00 20.55 O
ATOM 27 O5' G B 60 -18.873 17.259 0.838 1.00 21.30 O
TER
ATOM 2 P G A 58 -10.799 21.277 3.583 1.00 21.66 P
ATOM 3 OP1 G A 58 -10.178 22.518 3.055 1.00 24.92 O
ATOM 4 OP2 G A 58 -11.696 21.373 4.762 1.00 19.57 O
ATOM 5 O5' G A 58 -11.532 20.490 2.405 1.00 18.58 O
ATOM 6 C5' G A 58 -10.810 20.064 1.260 1.00 18.28 C
ATOM 7 C4' G A 58 -11.613 19.108 0.410 1.00 16.79 C
ATOM 8 O4' G A 58 -11.739 17.828 1.079 1.00 19.51 O
ATOM 9 C3' G A 58 -13.051 19.504 0.121 1.00 18.67 C
ATOM 10 O3' G A 58 -13.163 20.491 -0.890 1.00 21.20 O
ATOM 11 C2' G A 58 -13.685 18.167 -0.251 1.00 20.11 C
ATOM 12 O2' G A 58 -13.374 17.814 -1.590 1.00 24.02 O
ATOM 13 C1' G A 58 -12.948 17.207 0.689 1.00 19.71 C
ATOM 14 N9 G A 58 -13.747 16.907 1.890 1.00 17.76 N
ATOM 15 C8 G A 58 -13.707 17.493 3.133 1.00 16.39 C
ATOM 16 N7 G A 58 -14.594 16.989 3.951 1.00 17.04 N
ATOM 17 C5 G A 58 -15.260 16.029 3.199 1.00 16.85 C
ATOM 18 C6 G A 58 -16.324 15.152 3.535 1.00 20.58 C
ATOM 19 O6 G A 58 -16.919 15.038 4.613 1.00 25.81 O
ATOM 20 N1 G A 58 -16.687 14.347 2.460 1.00 17.35 N
ATOM 21 C2 G A 58 -16.105 14.373 1.217 1.00 18.40 C
ATOM 22 N2 G A 58 -16.592 13.519 0.303 1.00 18.92 N
ATOM 23 N3 G A 58 -15.115 15.182 0.894 1.00 17.01 N
ATOM 24 C4 G A 58 -14.748 15.971 1.926 1.00 17.60 C
ATOM 25 P A A 59 -14.061 21.805 -0.646 1.00 26.37 P
ATOM 26 OP1 A A 59 -14.030 22.592 -1.902 1.00 23.76 O
ATOM 27 OP2 A A 59 -13.580 22.440 0.604 1.00 18.80 O
ATOM 28 O5' A A 59 -15.517 21.200 -0.421 1.00 25.11 O
TER
ATOM 1 O3' G B 58 -13.163 20.491 -0.890 1.00 21.20 O
ATOM 2 P A B 59 -14.061 21.805 -0.646 1.00 26.37 P
ATOM 3 OP1 A B 59 -14.030 22.592 -1.902 1.00 23.76 O
ATOM 4 OP2 A B 59 -13.580 22.440 0.604 1.00 18.80 O
ATOM 5 O5' A B 59 -15.517 21.200 -0.421 1.00 25.11 O
ATOM 6 C5' A B 59 -16.591 22.017 0.019 1.00 21.85 C
ATOM 7 C4' A B 59 -17.899 21.583 -0.595 1.00 23.45 C
ATOM 8 O4' A B 59 -17.883 21.857 -2.016 1.00 20.81 O
ATOM 9 C3' A B 59 -18.221 20.095 -0.492 1.00 21.51 C
ATOM 10 O3' A B 59 -18.828 19.757 0.743 1.00 22.31 O
ATOM 11 C2' A B 59 -19.126 19.849 -1.697 1.00 21.16 C
ATOM 12 O2' A B 59 -20.471 20.202 -1.401 1.00 18.05 O
ATOM 13 C1' A B 59 -18.578 20.849 -2.717 1.00 21.61 C
ATOM 14 N9 A B 59 -17.654 20.228 -3.682 1.00 19.44 N
ATOM 15 C8 A B 59 -16.297 20.415 -3.769 1.00 22.56 C
ATOM 16 N7 A B 59 -15.738 19.750 -4.754 1.00 24.21 N
ATOM 17 C5 A B 59 -16.800 19.094 -5.359 1.00 21.12 C
ATOM 18 C6 A B 59 -16.873 18.231 -6.463 1.00 21.50 C
ATOM 19 N6 A B 59 -15.811 17.862 -7.181 1.00 27.15 N
ATOM 20 N1 A B 59 -18.084 17.750 -6.812 1.00 20.64 N
ATOM 21 C2 A B 59 -19.147 18.119 -6.091 1.00 19.69 C
ATOM 22 N3 A B 59 -19.206 18.924 -5.032 1.00 22.14 N
ATOM 23 C4 A B 59 -17.986 19.386 -4.715 1.00 20.94 C
ATOM 24 P G B 60 -18.286 18.519 1.612 1.00 23.77 P
ATOM 25 OP1 G B 60 -18.913 18.625 2.950 1.00 25.26 O
ATOM 26 OP2 G B 60 -16.804 18.528 1.517 1.00 20.55 O
ATOM 27 O5' G B 60 -18.873 17.259 0.838 1.00 21.30 O
TER
Atoms:
OP1: (-10.178,22.518,3.055)
OP2: (-11.696,21.373,4.762)
C3': (-13.051,19.504,0.121)
C1': (-12.948,17.207,0.689)
C5': (-10.810,20.064,1.260)
O6: (-16.919,15.038,4.613)
O4': (-11.739,17.828,1.079)
C8: (-13.707,17.493,3.133)
C2: (-16.105,14.373,1.217)
C6: (-16.324,15.152,3.535)
C5: (-15.260,16.029,3.199)
C4: (-14.748,15.971,1.926)
P: (-10.799,21.277,3.583)
C4': (-11.613,19.108,0.410)
C2': (-13.685,18.167,-0.251)
O2': (-13.374,17.814,-1.590)
N1: (-16.687,14.347,2.460)
N2: (-16.592,13.519,0.303)
N3: (-15.115,15.182,0.894)
N7: (-14.594,16.989,3.951)
N9: (-13.747,16.907,1.890)
O5': (-11.532,20.490,2.405)
O3': (-13.163,20.491,-0.890)
OP2: (-11.696,21.373,4.762)
C3': (-13.051,19.504,0.121)
C1': (-12.948,17.207,0.689)
C5': (-10.810,20.064,1.260)
O6: (-16.919,15.038,4.613)
O4': (-11.739,17.828,1.079)
C8: (-13.707,17.493,3.133)
C2: (-16.105,14.373,1.217)
C6: (-16.324,15.152,3.535)
C5: (-15.260,16.029,3.199)
C4: (-14.748,15.971,1.926)
P: (-10.799,21.277,3.583)
C4': (-11.613,19.108,0.410)
C2': (-13.685,18.167,-0.251)
O2': (-13.374,17.814,-1.590)
N1: (-16.687,14.347,2.460)
N2: (-16.592,13.519,0.303)
N3: (-15.115,15.182,0.894)
N7: (-14.594,16.989,3.951)
N9: (-13.747,16.907,1.890)
O5': (-11.532,20.490,2.405)
O3': (-13.163,20.491,-0.890)
OP1: (-14.030,22.592,-1.902)
OP2: (-13.580,22.440,0.604)
C3': (-18.221,20.095,-0.492)
C1': (-18.578,20.849,-2.717)
C5': (-16.591,22.017,0.019)
O4': (-17.883,21.857,-2.016)
C8: (-16.297,20.415,-3.769)
O2': (-20.471,20.202,-1.401)
C6: (-16.873,18.231,-6.463)
C5: (-16.800,19.094,-5.359)
C4: (-17.986,19.386,-4.715)
P: (-14.061,21.805,-0.646)
C4': (-17.899,21.583,-0.595)
C2': (-19.126,19.849,-1.697)
C2: (-19.147,18.119,-6.091)
N1: (-18.084,17.750,-6.812)
N3: (-19.206,18.924,-5.032)
N6: (-15.811,17.862,-7.181)
N7: (-15.738,19.750,-4.754)
N9: (-17.654,20.228,-3.682)
O5': (-15.517,21.200,-0.421)
O3': (-18.828,19.757,0.743)
OP2: (-13.580,22.440,0.604)
C3': (-18.221,20.095,-0.492)
C1': (-18.578,20.849,-2.717)
C5': (-16.591,22.017,0.019)
O4': (-17.883,21.857,-2.016)
C8: (-16.297,20.415,-3.769)
O2': (-20.471,20.202,-1.401)
C6: (-16.873,18.231,-6.463)
C5: (-16.800,19.094,-5.359)
C4: (-17.986,19.386,-4.715)
P: (-14.061,21.805,-0.646)
C4': (-17.899,21.583,-0.595)
C2': (-19.126,19.849,-1.697)
C2: (-19.147,18.119,-6.091)
N1: (-18.084,17.750,-6.812)
N3: (-19.206,18.924,-5.032)
N6: (-15.811,17.862,-7.181)
N7: (-15.738,19.750,-4.754)
N9: (-17.654,20.228,-3.682)
O5': (-15.517,21.200,-0.421)
O3': (-18.828,19.757,0.743)
Image (generated by PyMOL):