Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8T:A499:A500
Extra
PDB:
ATOM 1 O3' U A 498 -3.861 152.903 225.409 1.00 7.45 O
ATOM 2 P G A 499 -5.096 153.741 226.024 1.00 7.91 P
ATOM 3 OP1 G A 499 -4.616 155.112 226.298 1.00 7.91 O
ATOM 4 OP2 G A 499 -5.662 152.940 227.143 1.00 7.91 O
ATOM 5 O5' G A 499 -6.118 153.798 224.824 1.00 7.91 O
ATOM 6 C5' G A 499 -6.259 154.984 224.081 1.00 7.91 C
ATOM 7 C4' G A 499 -7.458 154.915 223.204 1.00 7.91 C
ATOM 8 O4' G A 499 -7.463 153.649 222.508 1.00 7.91 O
ATOM 9 C3' G A 499 -8.781 154.940 223.924 1.00 7.91 C
ATOM 10 O3' G A 499 -9.188 156.241 224.269 1.00 7.91 O
ATOM 11 C2' G A 499 -9.704 154.244 222.943 1.00 7.91 C
ATOM 12 O2' G A 499 -10.071 155.105 221.879 1.00 7.91 O
ATOM 13 C1' G A 499 -8.778 153.163 222.406 1.00 7.91 C
ATOM 14 N9 G A 499 -8.877 151.962 223.220 1.00 8.00 N
ATOM 15 C8 G A 499 -8.124 151.628 224.302 1.00 8.00 C
ATOM 16 N7 G A 499 -8.534 150.509 224.827 1.00 8.00 N
ATOM 17 C5 G A 499 -9.615 150.119 224.051 1.00 8.00 C
ATOM 18 C6 G A 499 -10.449 149.001 224.138 1.00 8.00 C
ATOM 19 O6 G A 499 -10.401 148.096 224.946 1.00 8.00 O
ATOM 20 N1 G A 499 -11.410 149.004 223.155 1.00 8.00 N
ATOM 21 C2 G A 499 -11.556 149.977 222.195 1.00 8.00 C
ATOM 22 N2 G A 499 -12.566 149.808 221.322 1.00 8.00 N
ATOM 23 N3 G A 499 -10.777 151.040 222.090 1.00 8.00 N
ATOM 24 C4 G A 499 -9.842 151.024 223.053 1.00 8.00 C
ATOM 25 P A A 500 -9.614 156.548 225.771 1.00 0.40 P
ATOM 26 OP1 A A 500 -9.259 157.974 226.047 1.00 0.40 O
ATOM 27 OP2 A A 500 -9.012 155.459 226.618 1.00 0.40 O
ATOM 28 O5' A A 500 -11.203 156.376 225.727 1.00 0.40 O
TER
ATOM 1 O3' G B 499 -9.188 156.241 224.269 1.00 7.91 O
ATOM 2 P A B 500 -9.614 156.548 225.771 1.00 0.40 P
ATOM 3 OP1 A B 500 -9.259 157.974 226.047 1.00 0.40 O
ATOM 4 OP2 A B 500 -9.012 155.459 226.618 1.00 0.40 O
ATOM 5 O5' A B 500 -11.203 156.376 225.727 1.00 0.40 O
ATOM 6 C5' A B 500 -11.951 156.210 226.927 1.00 0.40 C
ATOM 7 C4' A B 500 -13.378 155.809 226.643 1.00 0.40 C
ATOM 8 O4' A B 500 -14.048 156.847 225.897 1.00 0.40 O
ATOM 9 C3' A B 500 -13.547 154.583 225.796 1.00 0.40 C
ATOM 10 O3' A B 500 -13.461 153.415 226.546 1.00 0.40 O
ATOM 11 C2' A B 500 -14.896 154.791 225.159 1.00 0.40 C
ATOM 12 O2' A B 500 -15.922 154.515 226.082 1.00 0.40 O
ATOM 13 C1' A B 500 -14.867 156.283 224.912 1.00 0.40 C
ATOM 14 N9 A B 500 -14.282 156.622 223.609 1.00 0.37 N
ATOM 15 C8 A B 500 -12.981 156.996 223.410 1.00 0.37 C
ATOM 16 N7 A B 500 -12.721 157.265 222.157 1.00 0.37 N
ATOM 17 C5 A B 500 -13.927 157.071 221.494 1.00 0.37 C
ATOM 18 C6 A B 500 -14.302 157.199 220.153 1.00 0.37 C
ATOM 19 N6 A B 500 -13.469 157.566 219.172 1.00 0.37 N
ATOM 20 N1 A B 500 -15.578 156.931 219.840 1.00 0.37 N
ATOM 21 C2 A B 500 -16.416 156.563 220.802 1.00 0.37 C
ATOM 22 N3 A B 500 -16.179 156.397 222.092 1.00 0.37 N
ATOM 23 C4 A B 500 -14.903 156.680 222.381 1.00 0.37 C
ATOM 24 P A B 501 -12.647 152.213 225.952 1.00 0.74 P
ATOM 25 OP1 A B 501 -12.570 151.166 226.985 1.00 0.74 O
ATOM 26 OP2 A B 501 -11.389 152.784 225.403 1.00 0.74 O
ATOM 27 O5' A B 501 -13.596 151.741 224.792 1.00 0.74 O
TER
ATOM 2 P G A 499 -5.096 153.741 226.024 1.00 7.91 P
ATOM 3 OP1 G A 499 -4.616 155.112 226.298 1.00 7.91 O
ATOM 4 OP2 G A 499 -5.662 152.940 227.143 1.00 7.91 O
ATOM 5 O5' G A 499 -6.118 153.798 224.824 1.00 7.91 O
ATOM 6 C5' G A 499 -6.259 154.984 224.081 1.00 7.91 C
ATOM 7 C4' G A 499 -7.458 154.915 223.204 1.00 7.91 C
ATOM 8 O4' G A 499 -7.463 153.649 222.508 1.00 7.91 O
ATOM 9 C3' G A 499 -8.781 154.940 223.924 1.00 7.91 C
ATOM 10 O3' G A 499 -9.188 156.241 224.269 1.00 7.91 O
ATOM 11 C2' G A 499 -9.704 154.244 222.943 1.00 7.91 C
ATOM 12 O2' G A 499 -10.071 155.105 221.879 1.00 7.91 O
ATOM 13 C1' G A 499 -8.778 153.163 222.406 1.00 7.91 C
ATOM 14 N9 G A 499 -8.877 151.962 223.220 1.00 8.00 N
ATOM 15 C8 G A 499 -8.124 151.628 224.302 1.00 8.00 C
ATOM 16 N7 G A 499 -8.534 150.509 224.827 1.00 8.00 N
ATOM 17 C5 G A 499 -9.615 150.119 224.051 1.00 8.00 C
ATOM 18 C6 G A 499 -10.449 149.001 224.138 1.00 8.00 C
ATOM 19 O6 G A 499 -10.401 148.096 224.946 1.00 8.00 O
ATOM 20 N1 G A 499 -11.410 149.004 223.155 1.00 8.00 N
ATOM 21 C2 G A 499 -11.556 149.977 222.195 1.00 8.00 C
ATOM 22 N2 G A 499 -12.566 149.808 221.322 1.00 8.00 N
ATOM 23 N3 G A 499 -10.777 151.040 222.090 1.00 8.00 N
ATOM 24 C4 G A 499 -9.842 151.024 223.053 1.00 8.00 C
ATOM 25 P A A 500 -9.614 156.548 225.771 1.00 0.40 P
ATOM 26 OP1 A A 500 -9.259 157.974 226.047 1.00 0.40 O
ATOM 27 OP2 A A 500 -9.012 155.459 226.618 1.00 0.40 O
ATOM 28 O5' A A 500 -11.203 156.376 225.727 1.00 0.40 O
TER
ATOM 1 O3' G B 499 -9.188 156.241 224.269 1.00 7.91 O
ATOM 2 P A B 500 -9.614 156.548 225.771 1.00 0.40 P
ATOM 3 OP1 A B 500 -9.259 157.974 226.047 1.00 0.40 O
ATOM 4 OP2 A B 500 -9.012 155.459 226.618 1.00 0.40 O
ATOM 5 O5' A B 500 -11.203 156.376 225.727 1.00 0.40 O
ATOM 6 C5' A B 500 -11.951 156.210 226.927 1.00 0.40 C
ATOM 7 C4' A B 500 -13.378 155.809 226.643 1.00 0.40 C
ATOM 8 O4' A B 500 -14.048 156.847 225.897 1.00 0.40 O
ATOM 9 C3' A B 500 -13.547 154.583 225.796 1.00 0.40 C
ATOM 10 O3' A B 500 -13.461 153.415 226.546 1.00 0.40 O
ATOM 11 C2' A B 500 -14.896 154.791 225.159 1.00 0.40 C
ATOM 12 O2' A B 500 -15.922 154.515 226.082 1.00 0.40 O
ATOM 13 C1' A B 500 -14.867 156.283 224.912 1.00 0.40 C
ATOM 14 N9 A B 500 -14.282 156.622 223.609 1.00 0.37 N
ATOM 15 C8 A B 500 -12.981 156.996 223.410 1.00 0.37 C
ATOM 16 N7 A B 500 -12.721 157.265 222.157 1.00 0.37 N
ATOM 17 C5 A B 500 -13.927 157.071 221.494 1.00 0.37 C
ATOM 18 C6 A B 500 -14.302 157.199 220.153 1.00 0.37 C
ATOM 19 N6 A B 500 -13.469 157.566 219.172 1.00 0.37 N
ATOM 20 N1 A B 500 -15.578 156.931 219.840 1.00 0.37 N
ATOM 21 C2 A B 500 -16.416 156.563 220.802 1.00 0.37 C
ATOM 22 N3 A B 500 -16.179 156.397 222.092 1.00 0.37 N
ATOM 23 C4 A B 500 -14.903 156.680 222.381 1.00 0.37 C
ATOM 24 P A B 501 -12.647 152.213 225.952 1.00 0.74 P
ATOM 25 OP1 A B 501 -12.570 151.166 226.985 1.00 0.74 O
ATOM 26 OP2 A B 501 -11.389 152.784 225.403 1.00 0.74 O
ATOM 27 O5' A B 501 -13.596 151.741 224.792 1.00 0.74 O
TER
Atoms:
OP1: (-4.616,155.112,226.298)
OP2: (-5.662,152.940,227.143)
C3': (-8.781,154.940,223.924)
C1': (-8.778,153.163,222.406)
C5': (-6.259,154.984,224.081)
O6: (-10.401,148.096,224.946)
O4': (-7.463,153.649,222.508)
C8: (-8.124,151.628,224.302)
C2: (-11.556,149.977,222.195)
C6: (-10.449,149.001,224.138)
C5: (-9.615,150.119,224.051)
C4: (-9.842,151.024,223.053)
P: (-5.096,153.741,226.024)
C4': (-7.458,154.915,223.204)
C2': (-9.704,154.244,222.943)
O2': (-10.071,155.105,221.879)
N1: (-11.410,149.004,223.155)
N2: (-12.566,149.808,221.322)
N3: (-10.777,151.040,222.090)
N7: (-8.534,150.509,224.827)
N9: (-8.877,151.962,223.220)
O5': (-6.118,153.798,224.824)
O3': (-9.188,156.241,224.269)
OP2: (-5.662,152.940,227.143)
C3': (-8.781,154.940,223.924)
C1': (-8.778,153.163,222.406)
C5': (-6.259,154.984,224.081)
O6: (-10.401,148.096,224.946)
O4': (-7.463,153.649,222.508)
C8: (-8.124,151.628,224.302)
C2: (-11.556,149.977,222.195)
C6: (-10.449,149.001,224.138)
C5: (-9.615,150.119,224.051)
C4: (-9.842,151.024,223.053)
P: (-5.096,153.741,226.024)
C4': (-7.458,154.915,223.204)
C2': (-9.704,154.244,222.943)
O2': (-10.071,155.105,221.879)
N1: (-11.410,149.004,223.155)
N2: (-12.566,149.808,221.322)
N3: (-10.777,151.040,222.090)
N7: (-8.534,150.509,224.827)
N9: (-8.877,151.962,223.220)
O5': (-6.118,153.798,224.824)
O3': (-9.188,156.241,224.269)
OP1: (-9.259,157.974,226.047)
OP2: (-9.012,155.459,226.618)
C3': (-13.547,154.583,225.796)
C1': (-14.867,156.283,224.912)
C5': (-11.951,156.210,226.927)
O4': (-14.048,156.847,225.897)
C8: (-12.981,156.996,223.410)
O2': (-15.922,154.515,226.082)
C6: (-14.302,157.199,220.153)
C5: (-13.927,157.071,221.494)
C4: (-14.903,156.680,222.381)
P: (-9.614,156.548,225.771)
C4': (-13.378,155.809,226.643)
C2': (-14.896,154.791,225.159)
C2: (-16.416,156.563,220.802)
N1: (-15.578,156.931,219.840)
N3: (-16.179,156.397,222.092)
N6: (-13.469,157.566,219.172)
N7: (-12.721,157.265,222.157)
N9: (-14.282,156.622,223.609)
O5': (-11.203,156.376,225.727)
O3': (-13.461,153.415,226.546)
OP2: (-9.012,155.459,226.618)
C3': (-13.547,154.583,225.796)
C1': (-14.867,156.283,224.912)
C5': (-11.951,156.210,226.927)
O4': (-14.048,156.847,225.897)
C8: (-12.981,156.996,223.410)
O2': (-15.922,154.515,226.082)
C6: (-14.302,157.199,220.153)
C5: (-13.927,157.071,221.494)
C4: (-14.903,156.680,222.381)
P: (-9.614,156.548,225.771)
C4': (-13.378,155.809,226.643)
C2': (-14.896,154.791,225.159)
C2: (-16.416,156.563,220.802)
N1: (-15.578,156.931,219.840)
N3: (-16.179,156.397,222.092)
N6: (-13.469,157.566,219.172)
N7: (-12.721,157.265,222.157)
N9: (-14.282,156.622,223.609)
O5': (-11.203,156.376,225.727)
O3': (-13.461,153.415,226.546)
Image (generated by PyMOL):