Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12652:12781
Extra
PDB:
ATOM 1 O3' C A2651 -5.999 21.314 13.300 1.00 64.49 O
ATOM 2 P A A2652 -7.212 21.595 12.237 1.00 60.33 P
ATOM 3 OP1 A A2652 -8.434 21.521 13.045 1.00 60.37 O
ATOM 4 OP2 A A2652 -7.071 20.664 11.065 1.00 60.55 O
ATOM 5 O5' A A2652 -6.961 23.092 11.772 1.00 60.72 O
ATOM 6 C5' A A2652 -7.013 23.440 10.401 1.00 61.31 C
ATOM 7 C4' A A2652 -7.310 24.913 10.210 1.00 61.77 C
ATOM 8 O4' A A2652 -8.732 25.117 9.930 1.00 62.32 O
ATOM 9 C3' A A2652 -7.013 25.818 11.405 1.00 61.44 C
ATOM 10 O3' A A2652 -5.658 26.229 11.452 1.00 61.14 O
ATOM 11 C2' A A2652 -7.982 26.967 11.191 1.00 62.04 C
ATOM 12 O2' A A2652 -7.497 27.842 10.185 1.00 62.47 O
ATOM 13 C1' A A2652 -9.200 26.237 10.648 1.00 62.43 C
ATOM 14 N9 A A2652 -10.051 25.762 11.748 1.00 62.17 N
ATOM 15 C8 A A2652 -10.218 24.494 12.264 1.00 61.76 C
ATOM 16 N7 A A2652 -11.071 24.461 13.268 1.00 61.64 N
ATOM 17 C5 A A2652 -11.490 25.788 13.436 1.00 61.99 C
ATOM 18 C6 A A2652 -12.392 26.442 14.331 1.00 62.08 C
ATOM 19 N6 A A2652 -13.090 25.839 15.308 1.00 61.82 N
ATOM 20 N1 A A2652 -12.559 27.782 14.197 1.00 62.49 N
ATOM 21 C2 A A2652 -11.874 28.406 13.220 1.00 62.77 C
ATOM 22 N3 A A2652 -11.001 27.927 12.319 1.00 62.72 N
ATOM 23 C4 A A2652 -10.851 26.595 12.493 1.00 62.31 C
ATOM 24 P G A2653 -5.021 26.825 12.810 1.00 64.02 P
ATOM 25 OP1 G A2653 -3.738 27.525 12.436 1.00 63.97 O
ATOM 26 OP2 G A2653 -4.956 25.700 13.794 1.00 63.41 O
ATOM 27 O5' G A2653 -6.124 27.902 13.283 1.00 64.40 O
TER
ATOM 1 O3' G B2780 -21.877 32.651 16.058 1.00 75.36 O
ATOM 2 P A B2781 -21.062 33.510 17.140 1.00 82.56 P
ATOM 3 OP1 A B2781 -22.027 34.456 17.754 1.00 82.94 O
ATOM 4 OP2 A B2781 -19.862 34.070 16.459 1.00 82.54 O
ATOM 5 O5' A B2781 -20.644 32.399 18.213 1.00 81.76 O
ATOM 6 C5' A B2781 -21.629 31.846 19.080 1.00 81.66 C
ATOM 7 C4' A B2781 -21.084 30.761 19.974 1.00 80.91 C
ATOM 8 O4' A B2781 -20.656 29.632 19.181 1.00 80.74 O
ATOM 9 C3' A B2781 -19.873 31.130 20.820 1.00 80.33 C
ATOM 10 O3' A B2781 -20.228 31.769 22.026 1.00 80.24 O
ATOM 11 C2' A B2781 -19.201 29.797 21.047 1.00 79.70 C
ATOM 12 O2' A B2781 -19.878 29.101 22.072 1.00 79.43 O
ATOM 13 C1' A B2781 -19.466 29.089 19.715 1.00 80.03 C
ATOM 14 N9 A B2781 -18.382 29.306 18.720 1.00 80.05 N
ATOM 15 C8 A B2781 -18.335 30.363 17.841 1.00 80.59 C
ATOM 16 N7 A B2781 -17.329 30.379 17.012 1.00 80.54 N
ATOM 17 C5 A B2781 -16.657 29.242 17.344 1.00 79.94 C
ATOM 18 C6 A B2781 -15.493 28.733 16.786 1.00 79.63 C
ATOM 19 N6 A B2781 -14.867 29.350 15.786 1.00 79.92 N
ATOM 20 N1 A B2781 -15.014 27.580 17.295 1.00 79.04 N
ATOM 21 C2 A B2781 -15.706 27.012 18.306 1.00 78.79 C
ATOM 22 N3 A B2781 -16.829 27.401 18.925 1.00 79.03 N
ATOM 23 C4 A B2781 -17.269 28.558 18.387 1.00 79.62 C
ATOM 24 P G B2782 -19.471 33.104 22.472 1.00 80.50 P
ATOM 25 OP1 G B2782 -20.300 33.757 23.519 1.00 80.64 O
ATOM 26 OP2 G B2782 -19.170 33.866 21.227 1.00 80.99 O
ATOM 27 O5' G B2782 -18.117 32.534 23.122 1.00 79.71 O
TER
ATOM 2 P A A2652 -7.212 21.595 12.237 1.00 60.33 P
ATOM 3 OP1 A A2652 -8.434 21.521 13.045 1.00 60.37 O
ATOM 4 OP2 A A2652 -7.071 20.664 11.065 1.00 60.55 O
ATOM 5 O5' A A2652 -6.961 23.092 11.772 1.00 60.72 O
ATOM 6 C5' A A2652 -7.013 23.440 10.401 1.00 61.31 C
ATOM 7 C4' A A2652 -7.310 24.913 10.210 1.00 61.77 C
ATOM 8 O4' A A2652 -8.732 25.117 9.930 1.00 62.32 O
ATOM 9 C3' A A2652 -7.013 25.818 11.405 1.00 61.44 C
ATOM 10 O3' A A2652 -5.658 26.229 11.452 1.00 61.14 O
ATOM 11 C2' A A2652 -7.982 26.967 11.191 1.00 62.04 C
ATOM 12 O2' A A2652 -7.497 27.842 10.185 1.00 62.47 O
ATOM 13 C1' A A2652 -9.200 26.237 10.648 1.00 62.43 C
ATOM 14 N9 A A2652 -10.051 25.762 11.748 1.00 62.17 N
ATOM 15 C8 A A2652 -10.218 24.494 12.264 1.00 61.76 C
ATOM 16 N7 A A2652 -11.071 24.461 13.268 1.00 61.64 N
ATOM 17 C5 A A2652 -11.490 25.788 13.436 1.00 61.99 C
ATOM 18 C6 A A2652 -12.392 26.442 14.331 1.00 62.08 C
ATOM 19 N6 A A2652 -13.090 25.839 15.308 1.00 61.82 N
ATOM 20 N1 A A2652 -12.559 27.782 14.197 1.00 62.49 N
ATOM 21 C2 A A2652 -11.874 28.406 13.220 1.00 62.77 C
ATOM 22 N3 A A2652 -11.001 27.927 12.319 1.00 62.72 N
ATOM 23 C4 A A2652 -10.851 26.595 12.493 1.00 62.31 C
ATOM 24 P G A2653 -5.021 26.825 12.810 1.00 64.02 P
ATOM 25 OP1 G A2653 -3.738 27.525 12.436 1.00 63.97 O
ATOM 26 OP2 G A2653 -4.956 25.700 13.794 1.00 63.41 O
ATOM 27 O5' G A2653 -6.124 27.902 13.283 1.00 64.40 O
TER
ATOM 1 O3' G B2780 -21.877 32.651 16.058 1.00 75.36 O
ATOM 2 P A B2781 -21.062 33.510 17.140 1.00 82.56 P
ATOM 3 OP1 A B2781 -22.027 34.456 17.754 1.00 82.94 O
ATOM 4 OP2 A B2781 -19.862 34.070 16.459 1.00 82.54 O
ATOM 5 O5' A B2781 -20.644 32.399 18.213 1.00 81.76 O
ATOM 6 C5' A B2781 -21.629 31.846 19.080 1.00 81.66 C
ATOM 7 C4' A B2781 -21.084 30.761 19.974 1.00 80.91 C
ATOM 8 O4' A B2781 -20.656 29.632 19.181 1.00 80.74 O
ATOM 9 C3' A B2781 -19.873 31.130 20.820 1.00 80.33 C
ATOM 10 O3' A B2781 -20.228 31.769 22.026 1.00 80.24 O
ATOM 11 C2' A B2781 -19.201 29.797 21.047 1.00 79.70 C
ATOM 12 O2' A B2781 -19.878 29.101 22.072 1.00 79.43 O
ATOM 13 C1' A B2781 -19.466 29.089 19.715 1.00 80.03 C
ATOM 14 N9 A B2781 -18.382 29.306 18.720 1.00 80.05 N
ATOM 15 C8 A B2781 -18.335 30.363 17.841 1.00 80.59 C
ATOM 16 N7 A B2781 -17.329 30.379 17.012 1.00 80.54 N
ATOM 17 C5 A B2781 -16.657 29.242 17.344 1.00 79.94 C
ATOM 18 C6 A B2781 -15.493 28.733 16.786 1.00 79.63 C
ATOM 19 N6 A B2781 -14.867 29.350 15.786 1.00 79.92 N
ATOM 20 N1 A B2781 -15.014 27.580 17.295 1.00 79.04 N
ATOM 21 C2 A B2781 -15.706 27.012 18.306 1.00 78.79 C
ATOM 22 N3 A B2781 -16.829 27.401 18.925 1.00 79.03 N
ATOM 23 C4 A B2781 -17.269 28.558 18.387 1.00 79.62 C
ATOM 24 P G B2782 -19.471 33.104 22.472 1.00 80.50 P
ATOM 25 OP1 G B2782 -20.300 33.757 23.519 1.00 80.64 O
ATOM 26 OP2 G B2782 -19.170 33.866 21.227 1.00 80.99 O
ATOM 27 O5' G B2782 -18.117 32.534 23.122 1.00 79.71 O
TER
Atoms:
OP1: (-8.434,21.521,13.045)
OP2: (-7.071,20.664,11.065)
C3': (-7.013,25.818,11.405)
C1': (-9.200,26.237,10.648)
C5': (-7.013,23.440,10.401)
O4': (-8.732,25.117,9.930)
C8: (-10.218,24.494,12.264)
O2': (-7.497,27.842,10.185)
C6: (-12.392,26.442,14.331)
C5: (-11.490,25.788,13.436)
C4: (-10.851,26.595,12.493)
P: (-7.212,21.595,12.237)
C4': (-7.310,24.913,10.210)
C2': (-7.982,26.967,11.191)
C2: (-11.874,28.406,13.220)
N1: (-12.559,27.782,14.197)
N3: (-11.001,27.927,12.319)
N6: (-13.090,25.839,15.308)
N7: (-11.071,24.461,13.268)
N9: (-10.051,25.762,11.748)
O5': (-6.961,23.092,11.772)
O3': (-5.658,26.229,11.452)
OP2: (-7.071,20.664,11.065)
C3': (-7.013,25.818,11.405)
C1': (-9.200,26.237,10.648)
C5': (-7.013,23.440,10.401)
O4': (-8.732,25.117,9.930)
C8: (-10.218,24.494,12.264)
O2': (-7.497,27.842,10.185)
C6: (-12.392,26.442,14.331)
C5: (-11.490,25.788,13.436)
C4: (-10.851,26.595,12.493)
P: (-7.212,21.595,12.237)
C4': (-7.310,24.913,10.210)
C2': (-7.982,26.967,11.191)
C2: (-11.874,28.406,13.220)
N1: (-12.559,27.782,14.197)
N3: (-11.001,27.927,12.319)
N6: (-13.090,25.839,15.308)
N7: (-11.071,24.461,13.268)
N9: (-10.051,25.762,11.748)
O5': (-6.961,23.092,11.772)
O3': (-5.658,26.229,11.452)
OP1: (-22.027,34.456,17.754)
OP2: (-19.862,34.070,16.459)
C3': (-19.873,31.130,20.820)
C1': (-19.466,29.089,19.715)
C5': (-21.629,31.846,19.080)
O4': (-20.656,29.632,19.181)
C8: (-18.335,30.363,17.841)
O2': (-19.878,29.101,22.072)
C6: (-15.493,28.733,16.786)
C5: (-16.657,29.242,17.344)
C4: (-17.269,28.558,18.387)
P: (-21.062,33.510,17.140)
C4': (-21.084,30.761,19.974)
C2': (-19.201,29.797,21.047)
C2: (-15.706,27.012,18.306)
N1: (-15.014,27.580,17.295)
N3: (-16.829,27.401,18.925)
N6: (-14.867,29.350,15.786)
N7: (-17.329,30.379,17.012)
N9: (-18.382,29.306,18.720)
O5': (-20.644,32.399,18.213)
O3': (-20.228,31.769,22.026)
OP2: (-19.862,34.070,16.459)
C3': (-19.873,31.130,20.820)
C1': (-19.466,29.089,19.715)
C5': (-21.629,31.846,19.080)
O4': (-20.656,29.632,19.181)
C8: (-18.335,30.363,17.841)
O2': (-19.878,29.101,22.072)
C6: (-15.493,28.733,16.786)
C5: (-16.657,29.242,17.344)
C4: (-17.269,28.558,18.387)
P: (-21.062,33.510,17.140)
C4': (-21.084,30.761,19.974)
C2': (-19.201,29.797,21.047)
C2: (-15.706,27.012,18.306)
N1: (-15.014,27.580,17.295)
N3: (-16.829,27.401,18.925)
N6: (-14.867,29.350,15.786)
N7: (-17.329,30.379,17.012)
N9: (-18.382,29.306,18.720)
O5': (-20.644,32.399,18.213)
O3': (-20.228,31.769,22.026)
Image (generated by PyMOL):