Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12028:12029
Extra
PDB:
ATOM 1 O3' A A2027 17.351 -70.464 107.851 1.00 67.26 O
ATOM 2 P G A2028 18.353 -71.146 108.914 1.00 72.34 P
ATOM 3 OP1 G A2028 18.454 -72.582 108.552 1.00 72.79 O
ATOM 4 OP2 G A2028 17.881 -70.772 110.275 1.00 72.56 O
ATOM 5 O5' G A2028 19.734 -70.424 108.607 1.00 71.93 O
ATOM 6 C5' G A2028 20.365 -70.574 107.339 1.00 71.66 C
ATOM 7 C4' G A2028 21.502 -69.614 107.165 1.00 71.22 C
ATOM 8 O4' G A2028 20.999 -68.258 107.159 1.00 70.76 O
ATOM 9 C3' G A2028 22.534 -69.589 108.268 1.00 71.43 C
ATOM 10 O3' G A2028 23.407 -70.688 108.233 1.00 71.79 O
ATOM 11 C2' G A2028 23.215 -68.261 108.017 1.00 70.87 C
ATOM 12 O2' G A2028 24.102 -68.352 106.905 1.00 70.61 O
ATOM 13 C1' G A2028 22.005 -67.385 107.627 1.00 70.52 C
ATOM 14 N9 G A2028 21.502 -66.645 108.798 1.00 70.56 N
ATOM 15 C8 G A2028 20.607 -67.063 109.743 1.00 70.97 C
ATOM 16 N7 G A2028 20.479 -66.207 110.724 1.00 70.93 N
ATOM 17 C5 G A2028 21.370 -65.183 110.431 1.00 70.47 C
ATOM 18 C6 G A2028 21.685 -63.992 111.129 1.00 70.24 C
ATOM 19 O6 G A2028 21.250 -63.536 112.176 1.00 70.39 O
ATOM 20 N1 G A2028 22.637 -63.253 110.478 1.00 69.80 N
ATOM 21 C2 G A2028 23.241 -63.602 109.297 1.00 69.60 C
ATOM 22 N2 G A2028 24.164 -62.723 108.856 1.00 69.18 N
ATOM 23 N3 G A2028 22.954 -64.709 108.620 1.00 69.81 N
ATOM 24 C4 G A2028 22.015 -65.450 109.247 1.00 70.24 C
ATOM 25 P A A2029 23.557 -71.633 109.521 1.00 68.30 P
ATOM 26 OP1 A A2029 24.489 -72.721 109.165 1.00 68.60 O
ATOM 27 OP2 A A2029 22.204 -71.985 109.977 1.00 68.59 O
ATOM 28 O5' A A2029 24.231 -70.682 110.576 1.00 68.19 O
TER
ATOM 1 O3' G B2028 23.407 -70.688 108.233 1.00 71.79 O
ATOM 2 P A B2029 23.557 -71.633 109.521 1.00 68.30 P
ATOM 3 OP1 A B2029 24.489 -72.721 109.165 1.00 68.60 O
ATOM 4 OP2 A B2029 22.204 -71.985 109.977 1.00 68.59 O
ATOM 5 O5' A B2029 24.231 -70.682 110.576 1.00 68.19 O
ATOM 6 C5' A B2029 24.907 -71.222 111.690 1.00 68.65 C
ATOM 7 C4' A B2029 26.037 -70.331 112.098 1.00 68.41 C
ATOM 8 O4' A B2029 27.248 -70.719 111.405 1.00 68.35 O
ATOM 9 C3' A B2029 25.837 -68.867 111.782 1.00 67.80 C
ATOM 10 O3' A B2029 25.107 -68.213 112.821 1.00 67.86 O
ATOM 11 C2' A B2029 27.268 -68.360 111.577 1.00 67.54 C
ATOM 12 O2' A B2029 27.876 -68.090 112.836 1.00 67.77 O
ATOM 13 C1' A B2029 27.955 -69.595 110.969 1.00 67.82 C
ATOM 14 N9 A B2029 27.954 -69.648 109.483 1.00 67.46 N
ATOM 15 C8 A B2029 26.910 -70.107 108.725 1.00 67.46 C
ATOM 16 N7 A B2029 27.120 -70.172 107.429 1.00 67.17 N
ATOM 17 C5 A B2029 28.435 -69.797 107.284 1.00 66.98 C
ATOM 18 C6 A B2029 29.258 -69.681 106.135 1.00 66.67 C
ATOM 19 N6 A B2029 28.900 -69.913 104.859 1.00 66.47 N
ATOM 20 N1 A B2029 30.516 -69.302 106.334 1.00 66.57 N
ATOM 21 C2 A B2029 30.884 -69.054 107.584 1.00 66.77 C
ATOM 22 N3 A B2029 30.219 -69.123 108.739 1.00 67.07 N
ATOM 23 C4 A B2029 28.963 -69.511 108.537 1.00 67.17 C
ATOM 24 P A B2030 24.403 -66.795 112.585 1.00 74.12 P
ATOM 25 OP1 A B2030 23.106 -66.807 113.269 1.00 74.34 O
ATOM 26 OP2 A B2030 24.428 -66.515 111.155 1.00 73.65 O
ATOM 27 O5' A B2030 25.400 -65.831 113.347 1.00 73.97 O
TER
ATOM 2 P G A2028 18.353 -71.146 108.914 1.00 72.34 P
ATOM 3 OP1 G A2028 18.454 -72.582 108.552 1.00 72.79 O
ATOM 4 OP2 G A2028 17.881 -70.772 110.275 1.00 72.56 O
ATOM 5 O5' G A2028 19.734 -70.424 108.607 1.00 71.93 O
ATOM 6 C5' G A2028 20.365 -70.574 107.339 1.00 71.66 C
ATOM 7 C4' G A2028 21.502 -69.614 107.165 1.00 71.22 C
ATOM 8 O4' G A2028 20.999 -68.258 107.159 1.00 70.76 O
ATOM 9 C3' G A2028 22.534 -69.589 108.268 1.00 71.43 C
ATOM 10 O3' G A2028 23.407 -70.688 108.233 1.00 71.79 O
ATOM 11 C2' G A2028 23.215 -68.261 108.017 1.00 70.87 C
ATOM 12 O2' G A2028 24.102 -68.352 106.905 1.00 70.61 O
ATOM 13 C1' G A2028 22.005 -67.385 107.627 1.00 70.52 C
ATOM 14 N9 G A2028 21.502 -66.645 108.798 1.00 70.56 N
ATOM 15 C8 G A2028 20.607 -67.063 109.743 1.00 70.97 C
ATOM 16 N7 G A2028 20.479 -66.207 110.724 1.00 70.93 N
ATOM 17 C5 G A2028 21.370 -65.183 110.431 1.00 70.47 C
ATOM 18 C6 G A2028 21.685 -63.992 111.129 1.00 70.24 C
ATOM 19 O6 G A2028 21.250 -63.536 112.176 1.00 70.39 O
ATOM 20 N1 G A2028 22.637 -63.253 110.478 1.00 69.80 N
ATOM 21 C2 G A2028 23.241 -63.602 109.297 1.00 69.60 C
ATOM 22 N2 G A2028 24.164 -62.723 108.856 1.00 69.18 N
ATOM 23 N3 G A2028 22.954 -64.709 108.620 1.00 69.81 N
ATOM 24 C4 G A2028 22.015 -65.450 109.247 1.00 70.24 C
ATOM 25 P A A2029 23.557 -71.633 109.521 1.00 68.30 P
ATOM 26 OP1 A A2029 24.489 -72.721 109.165 1.00 68.60 O
ATOM 27 OP2 A A2029 22.204 -71.985 109.977 1.00 68.59 O
ATOM 28 O5' A A2029 24.231 -70.682 110.576 1.00 68.19 O
TER
ATOM 1 O3' G B2028 23.407 -70.688 108.233 1.00 71.79 O
ATOM 2 P A B2029 23.557 -71.633 109.521 1.00 68.30 P
ATOM 3 OP1 A B2029 24.489 -72.721 109.165 1.00 68.60 O
ATOM 4 OP2 A B2029 22.204 -71.985 109.977 1.00 68.59 O
ATOM 5 O5' A B2029 24.231 -70.682 110.576 1.00 68.19 O
ATOM 6 C5' A B2029 24.907 -71.222 111.690 1.00 68.65 C
ATOM 7 C4' A B2029 26.037 -70.331 112.098 1.00 68.41 C
ATOM 8 O4' A B2029 27.248 -70.719 111.405 1.00 68.35 O
ATOM 9 C3' A B2029 25.837 -68.867 111.782 1.00 67.80 C
ATOM 10 O3' A B2029 25.107 -68.213 112.821 1.00 67.86 O
ATOM 11 C2' A B2029 27.268 -68.360 111.577 1.00 67.54 C
ATOM 12 O2' A B2029 27.876 -68.090 112.836 1.00 67.77 O
ATOM 13 C1' A B2029 27.955 -69.595 110.969 1.00 67.82 C
ATOM 14 N9 A B2029 27.954 -69.648 109.483 1.00 67.46 N
ATOM 15 C8 A B2029 26.910 -70.107 108.725 1.00 67.46 C
ATOM 16 N7 A B2029 27.120 -70.172 107.429 1.00 67.17 N
ATOM 17 C5 A B2029 28.435 -69.797 107.284 1.00 66.98 C
ATOM 18 C6 A B2029 29.258 -69.681 106.135 1.00 66.67 C
ATOM 19 N6 A B2029 28.900 -69.913 104.859 1.00 66.47 N
ATOM 20 N1 A B2029 30.516 -69.302 106.334 1.00 66.57 N
ATOM 21 C2 A B2029 30.884 -69.054 107.584 1.00 66.77 C
ATOM 22 N3 A B2029 30.219 -69.123 108.739 1.00 67.07 N
ATOM 23 C4 A B2029 28.963 -69.511 108.537 1.00 67.17 C
ATOM 24 P A B2030 24.403 -66.795 112.585 1.00 74.12 P
ATOM 25 OP1 A B2030 23.106 -66.807 113.269 1.00 74.34 O
ATOM 26 OP2 A B2030 24.428 -66.515 111.155 1.00 73.65 O
ATOM 27 O5' A B2030 25.400 -65.831 113.347 1.00 73.97 O
TER
Atoms:
OP1: (18.454,-72.582,108.552)
OP2: (17.881,-70.772,110.275)
C3': (22.534,-69.589,108.268)
C1': (22.005,-67.385,107.627)
C5': (20.365,-70.574,107.339)
O6: (21.250,-63.536,112.176)
O4': (20.999,-68.258,107.159)
C8: (20.607,-67.063,109.743)
C2: (23.241,-63.602,109.297)
C6: (21.685,-63.992,111.129)
C5: (21.370,-65.183,110.431)
C4: (22.015,-65.450,109.247)
P: (18.353,-71.146,108.914)
C4': (21.502,-69.614,107.165)
C2': (23.215,-68.261,108.017)
O2': (24.102,-68.352,106.905)
N1: (22.637,-63.253,110.478)
N2: (24.164,-62.723,108.856)
N3: (22.954,-64.709,108.620)
N7: (20.479,-66.207,110.724)
N9: (21.502,-66.645,108.798)
O5': (19.734,-70.424,108.607)
O3': (23.407,-70.688,108.233)
OP2: (17.881,-70.772,110.275)
C3': (22.534,-69.589,108.268)
C1': (22.005,-67.385,107.627)
C5': (20.365,-70.574,107.339)
O6: (21.250,-63.536,112.176)
O4': (20.999,-68.258,107.159)
C8: (20.607,-67.063,109.743)
C2: (23.241,-63.602,109.297)
C6: (21.685,-63.992,111.129)
C5: (21.370,-65.183,110.431)
C4: (22.015,-65.450,109.247)
P: (18.353,-71.146,108.914)
C4': (21.502,-69.614,107.165)
C2': (23.215,-68.261,108.017)
O2': (24.102,-68.352,106.905)
N1: (22.637,-63.253,110.478)
N2: (24.164,-62.723,108.856)
N3: (22.954,-64.709,108.620)
N7: (20.479,-66.207,110.724)
N9: (21.502,-66.645,108.798)
O5': (19.734,-70.424,108.607)
O3': (23.407,-70.688,108.233)
OP1: (24.489,-72.721,109.165)
OP2: (22.204,-71.985,109.977)
C3': (25.837,-68.867,111.782)
C1': (27.955,-69.595,110.969)
C5': (24.907,-71.222,111.690)
O4': (27.248,-70.719,111.405)
C8: (26.910,-70.107,108.725)
O2': (27.876,-68.090,112.836)
C6: (29.258,-69.681,106.135)
C5: (28.435,-69.797,107.284)
C4: (28.963,-69.511,108.537)
P: (23.557,-71.633,109.521)
C4': (26.037,-70.331,112.098)
C2': (27.268,-68.360,111.577)
C2: (30.884,-69.054,107.584)
N1: (30.516,-69.302,106.334)
N3: (30.219,-69.123,108.739)
N6: (28.900,-69.913,104.859)
N7: (27.120,-70.172,107.429)
N9: (27.954,-69.648,109.483)
O5': (24.231,-70.682,110.576)
O3': (25.107,-68.213,112.821)
OP2: (22.204,-71.985,109.977)
C3': (25.837,-68.867,111.782)
C1': (27.955,-69.595,110.969)
C5': (24.907,-71.222,111.690)
O4': (27.248,-70.719,111.405)
C8: (26.910,-70.107,108.725)
O2': (27.876,-68.090,112.836)
C6: (29.258,-69.681,106.135)
C5: (28.435,-69.797,107.284)
C4: (28.963,-69.511,108.537)
P: (23.557,-71.633,109.521)
C4': (26.037,-70.331,112.098)
C2': (27.268,-68.360,111.577)
C2: (30.884,-69.054,107.584)
N1: (30.516,-69.302,106.334)
N3: (30.219,-69.123,108.739)
N6: (28.900,-69.913,104.859)
N7: (27.120,-70.172,107.429)
N9: (27.954,-69.648,109.483)
O5': (24.231,-70.682,110.576)
O3': (25.107,-68.213,112.821)
Image (generated by PyMOL):