Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A487:A488
Extra
PDB:
ATOM 1 O3' C A 486 -18.962-100.175 6.056 1.00 0.01 O
ATOM 2 P G A 487 -17.830 -99.074 5.984 1.00 0.01 P
ATOM 3 OP1 G A 487 -17.635 -98.754 4.552 1.00 0.01 O
ATOM 4 OP2 G A 487 -16.696 -99.582 6.781 1.00 0.01 O
ATOM 5 O5' G A 487 -18.498 -97.839 6.707 1.00 0.01 O
ATOM 6 C5' G A 487 -19.473 -97.071 6.028 1.00 0.01 C
ATOM 7 C4' G A 487 -20.173 -96.110 6.938 1.00 0.01 C
ATOM 8 O4' G A 487 -20.596 -96.777 8.149 1.00 0.01 O
ATOM 9 C3' G A 487 -19.349 -94.956 7.418 1.00 0.01 C
ATOM 10 O3' G A 487 -19.254 -93.948 6.442 1.00 0.01 O
ATOM 11 C2' G A 487 -20.091 -94.521 8.675 1.00 0.01 C
ATOM 12 O2' G A 487 -21.167 -93.670 8.339 1.00 0.01 O
ATOM 13 C1' G A 487 -20.656 -95.854 9.202 1.00 0.01 C
ATOM 14 N9 G A 487 -19.877 -96.392 10.329 1.00 0.01 N
ATOM 15 C8 G A 487 -18.909 -97.322 10.129 1.00 0.01 C
ATOM 16 N7 G A 487 -18.312 -97.683 11.230 1.00 0.01 N
ATOM 17 C5 G A 487 -18.932 -96.964 12.239 1.00 0.01 C
ATOM 18 C6 G A 487 -18.662 -96.955 13.643 1.00 0.01 C
ATOM 19 O6 G A 487 -17.831 -97.594 14.297 1.00 0.01 O
ATOM 20 N1 G A 487 -19.497 -96.082 14.322 1.00 0.01 N
ATOM 21 C2 G A 487 -20.467 -95.326 13.715 1.00 0.01 C
ATOM 22 N2 G A 487 -21.156 -94.560 14.576 1.00 0.01 N
ATOM 23 N3 G A 487 -20.714 -95.320 12.408 1.00 0.01 N
ATOM 24 C4 G A 487 -19.917 -96.159 11.705 1.00 0.01 C
ATOM 25 P G A 488 -17.823 -93.465 5.897 1.00 0.01 P
ATOM 26 OP1 G A 488 -18.061 -92.557 4.761 1.00 0.01 O
ATOM 27 OP2 G A 488 -16.996 -94.671 5.674 1.00 0.01 O
ATOM 28 O5' G A 488 -17.267 -92.642 7.106 1.00 0.01 O
TER
ATOM 1 O3' G B 487 -19.254 -93.948 6.442 1.00 0.01 O
ATOM 2 P G B 488 -17.823 -93.465 5.897 1.00 0.01 P
ATOM 3 OP1 G B 488 -18.061 -92.557 4.761 1.00 0.01 O
ATOM 4 OP2 G B 488 -16.996 -94.671 5.674 1.00 0.01 O
ATOM 5 O5' G B 488 -17.267 -92.642 7.106 1.00 0.01 O
ATOM 6 C5' G B 488 -16.061 -91.941 6.961 1.00 0.01 C
ATOM 7 C4' G B 488 -15.989 -90.785 7.888 1.00 0.01 C
ATOM 8 O4' G B 488 -17.077 -89.901 7.588 1.00 0.01 O
ATOM 9 C3' G B 488 -16.116 -91.146 9.353 1.00 0.01 C
ATOM 10 O3' G B 488 -15.285 -90.293 10.122 1.00 0.01 O
ATOM 11 C2' G B 488 -17.562 -90.841 9.655 1.00 0.01 C
ATOM 12 O2' G B 488 -17.789 -90.511 10.990 1.00 0.01 O
ATOM 13 C1' G B 488 -17.815 -89.655 8.748 1.00 0.01 C
ATOM 14 N9 G B 488 -19.219 -89.456 8.371 1.00 0.01 N
ATOM 15 C8 G B 488 -19.966 -90.025 7.371 1.00 0.01 C
ATOM 16 N7 G B 488 -21.196 -89.578 7.323 1.00 0.01 N
ATOM 17 C5 G B 488 -21.267 -88.656 8.349 1.00 0.01 C
ATOM 18 C6 G B 488 -22.337 -87.845 8.816 1.00 0.01 C
ATOM 19 O6 G B 488 -23.514 -87.777 8.382 1.00 0.01 O
ATOM 20 N1 G B 488 -21.916 -87.060 9.905 1.00 0.01 N
ATOM 21 C2 G B 488 -20.639 -87.065 10.443 1.00 0.01 C
ATOM 22 N2 G B 488 -20.321 -86.278 11.493 1.00 0.01 N
ATOM 23 N3 G B 488 -19.679 -87.822 9.998 1.00 0.01 N
ATOM 24 C4 G B 488 -20.056 -88.573 8.974 1.00 0.01 C
ATOM 25 P C B 489 -13.760 -90.693 10.440 1.00 4.76 P
ATOM 26 OP1 C B 489 -12.949 -89.453 10.350 1.00 4.76 O
ATOM 27 OP2 C B 489 -13.414 -91.839 9.566 1.00 4.76 O
ATOM 28 O5' C B 489 -13.840 -91.174 11.938 1.00 4.76 O
TER
ATOM 2 P G A 487 -17.830 -99.074 5.984 1.00 0.01 P
ATOM 3 OP1 G A 487 -17.635 -98.754 4.552 1.00 0.01 O
ATOM 4 OP2 G A 487 -16.696 -99.582 6.781 1.00 0.01 O
ATOM 5 O5' G A 487 -18.498 -97.839 6.707 1.00 0.01 O
ATOM 6 C5' G A 487 -19.473 -97.071 6.028 1.00 0.01 C
ATOM 7 C4' G A 487 -20.173 -96.110 6.938 1.00 0.01 C
ATOM 8 O4' G A 487 -20.596 -96.777 8.149 1.00 0.01 O
ATOM 9 C3' G A 487 -19.349 -94.956 7.418 1.00 0.01 C
ATOM 10 O3' G A 487 -19.254 -93.948 6.442 1.00 0.01 O
ATOM 11 C2' G A 487 -20.091 -94.521 8.675 1.00 0.01 C
ATOM 12 O2' G A 487 -21.167 -93.670 8.339 1.00 0.01 O
ATOM 13 C1' G A 487 -20.656 -95.854 9.202 1.00 0.01 C
ATOM 14 N9 G A 487 -19.877 -96.392 10.329 1.00 0.01 N
ATOM 15 C8 G A 487 -18.909 -97.322 10.129 1.00 0.01 C
ATOM 16 N7 G A 487 -18.312 -97.683 11.230 1.00 0.01 N
ATOM 17 C5 G A 487 -18.932 -96.964 12.239 1.00 0.01 C
ATOM 18 C6 G A 487 -18.662 -96.955 13.643 1.00 0.01 C
ATOM 19 O6 G A 487 -17.831 -97.594 14.297 1.00 0.01 O
ATOM 20 N1 G A 487 -19.497 -96.082 14.322 1.00 0.01 N
ATOM 21 C2 G A 487 -20.467 -95.326 13.715 1.00 0.01 C
ATOM 22 N2 G A 487 -21.156 -94.560 14.576 1.00 0.01 N
ATOM 23 N3 G A 487 -20.714 -95.320 12.408 1.00 0.01 N
ATOM 24 C4 G A 487 -19.917 -96.159 11.705 1.00 0.01 C
ATOM 25 P G A 488 -17.823 -93.465 5.897 1.00 0.01 P
ATOM 26 OP1 G A 488 -18.061 -92.557 4.761 1.00 0.01 O
ATOM 27 OP2 G A 488 -16.996 -94.671 5.674 1.00 0.01 O
ATOM 28 O5' G A 488 -17.267 -92.642 7.106 1.00 0.01 O
TER
ATOM 1 O3' G B 487 -19.254 -93.948 6.442 1.00 0.01 O
ATOM 2 P G B 488 -17.823 -93.465 5.897 1.00 0.01 P
ATOM 3 OP1 G B 488 -18.061 -92.557 4.761 1.00 0.01 O
ATOM 4 OP2 G B 488 -16.996 -94.671 5.674 1.00 0.01 O
ATOM 5 O5' G B 488 -17.267 -92.642 7.106 1.00 0.01 O
ATOM 6 C5' G B 488 -16.061 -91.941 6.961 1.00 0.01 C
ATOM 7 C4' G B 488 -15.989 -90.785 7.888 1.00 0.01 C
ATOM 8 O4' G B 488 -17.077 -89.901 7.588 1.00 0.01 O
ATOM 9 C3' G B 488 -16.116 -91.146 9.353 1.00 0.01 C
ATOM 10 O3' G B 488 -15.285 -90.293 10.122 1.00 0.01 O
ATOM 11 C2' G B 488 -17.562 -90.841 9.655 1.00 0.01 C
ATOM 12 O2' G B 488 -17.789 -90.511 10.990 1.00 0.01 O
ATOM 13 C1' G B 488 -17.815 -89.655 8.748 1.00 0.01 C
ATOM 14 N9 G B 488 -19.219 -89.456 8.371 1.00 0.01 N
ATOM 15 C8 G B 488 -19.966 -90.025 7.371 1.00 0.01 C
ATOM 16 N7 G B 488 -21.196 -89.578 7.323 1.00 0.01 N
ATOM 17 C5 G B 488 -21.267 -88.656 8.349 1.00 0.01 C
ATOM 18 C6 G B 488 -22.337 -87.845 8.816 1.00 0.01 C
ATOM 19 O6 G B 488 -23.514 -87.777 8.382 1.00 0.01 O
ATOM 20 N1 G B 488 -21.916 -87.060 9.905 1.00 0.01 N
ATOM 21 C2 G B 488 -20.639 -87.065 10.443 1.00 0.01 C
ATOM 22 N2 G B 488 -20.321 -86.278 11.493 1.00 0.01 N
ATOM 23 N3 G B 488 -19.679 -87.822 9.998 1.00 0.01 N
ATOM 24 C4 G B 488 -20.056 -88.573 8.974 1.00 0.01 C
ATOM 25 P C B 489 -13.760 -90.693 10.440 1.00 4.76 P
ATOM 26 OP1 C B 489 -12.949 -89.453 10.350 1.00 4.76 O
ATOM 27 OP2 C B 489 -13.414 -91.839 9.566 1.00 4.76 O
ATOM 28 O5' C B 489 -13.840 -91.174 11.938 1.00 4.76 O
TER
Atoms:
OP1: (-17.635,-98.754,4.552)
OP2: (-16.696,-99.582,6.781)
C3': (-19.349,-94.956,7.418)
C1': (-20.656,-95.854,9.202)
C5': (-19.473,-97.071,6.028)
O6: (-17.831,-97.594,14.297)
O4': (-20.596,-96.777,8.149)
C8: (-18.909,-97.322,10.129)
C2: (-20.467,-95.326,13.715)
C6: (-18.662,-96.955,13.643)
C5: (-18.932,-96.964,12.239)
C4: (-19.917,-96.159,11.705)
P: (-17.830,-99.074,5.984)
C4': (-20.173,-96.110,6.938)
C2': (-20.091,-94.521,8.675)
O2': (-21.167,-93.670,8.339)
N1: (-19.497,-96.082,14.322)
N2: (-21.156,-94.560,14.576)
N3: (-20.714,-95.320,12.408)
N7: (-18.312,-97.683,11.230)
N9: (-19.877,-96.392,10.329)
O5': (-18.498,-97.839,6.707)
O3': (-19.254,-93.948,6.442)
OP2: (-16.696,-99.582,6.781)
C3': (-19.349,-94.956,7.418)
C1': (-20.656,-95.854,9.202)
C5': (-19.473,-97.071,6.028)
O6: (-17.831,-97.594,14.297)
O4': (-20.596,-96.777,8.149)
C8: (-18.909,-97.322,10.129)
C2: (-20.467,-95.326,13.715)
C6: (-18.662,-96.955,13.643)
C5: (-18.932,-96.964,12.239)
C4: (-19.917,-96.159,11.705)
P: (-17.830,-99.074,5.984)
C4': (-20.173,-96.110,6.938)
C2': (-20.091,-94.521,8.675)
O2': (-21.167,-93.670,8.339)
N1: (-19.497,-96.082,14.322)
N2: (-21.156,-94.560,14.576)
N3: (-20.714,-95.320,12.408)
N7: (-18.312,-97.683,11.230)
N9: (-19.877,-96.392,10.329)
O5': (-18.498,-97.839,6.707)
O3': (-19.254,-93.948,6.442)
OP1: (-18.061,-92.557,4.761)
OP2: (-16.996,-94.671,5.674)
C3': (-16.116,-91.146,9.353)
C1': (-17.815,-89.655,8.748)
C5': (-16.061,-91.941,6.961)
O6: (-23.514,-87.777,8.382)
O4': (-17.077,-89.901,7.588)
C8: (-19.966,-90.025,7.371)
C2: (-20.639,-87.065,10.443)
C6: (-22.337,-87.845,8.816)
C5: (-21.267,-88.656,8.349)
C4: (-20.056,-88.573,8.974)
P: (-17.823,-93.465,5.897)
C4': (-15.989,-90.785,7.888)
C2': (-17.562,-90.841,9.655)
O2': (-17.789,-90.511,10.990)
N1: (-21.916,-87.060,9.905)
N2: (-20.321,-86.278,11.493)
N3: (-19.679,-87.822,9.998)
N7: (-21.196,-89.578,7.323)
N9: (-19.219,-89.456,8.371)
O5': (-17.267,-92.642,7.106)
O3': (-15.285,-90.293,10.122)
OP2: (-16.996,-94.671,5.674)
C3': (-16.116,-91.146,9.353)
C1': (-17.815,-89.655,8.748)
C5': (-16.061,-91.941,6.961)
O6: (-23.514,-87.777,8.382)
O4': (-17.077,-89.901,7.588)
C8: (-19.966,-90.025,7.371)
C2: (-20.639,-87.065,10.443)
C6: (-22.337,-87.845,8.816)
C5: (-21.267,-88.656,8.349)
C4: (-20.056,-88.573,8.974)
P: (-17.823,-93.465,5.897)
C4': (-15.989,-90.785,7.888)
C2': (-17.562,-90.841,9.655)
O2': (-17.789,-90.511,10.990)
N1: (-21.916,-87.060,9.905)
N2: (-20.321,-86.278,11.493)
N3: (-19.679,-87.822,9.998)
N7: (-21.196,-89.578,7.323)
N9: (-19.219,-89.456,8.371)
O5': (-17.267,-92.642,7.106)
O3': (-15.285,-90.293,10.122)
Image (generated by PyMOL):