Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A2389:A2388
Extra
PDB:
ATOM 1 O3' C A2388 59.679 139.241 122.035 1.00 32.04 O
ATOM 2 P C A2389 59.384 138.474 123.418 1.00 33.62 P
ATOM 3 OP1 C A2389 58.694 139.423 124.296 1.00 31.49 O
ATOM 4 OP2 C A2389 60.654 137.854 123.855 1.00 32.94 O
ATOM 5 O5' C A2389 58.370 137.307 123.039 1.00 29.52 O
ATOM 6 C5' C A2389 57.041 137.609 122.633 1.00 31.19 C
ATOM 7 C4' C A2389 56.332 136.369 122.158 1.00 32.34 C
ATOM 8 O4' C A2389 56.995 135.791 121.005 1.00 33.61 O
ATOM 9 C3' C A2389 56.254 135.221 123.138 1.00 32.06 C
ATOM 10 O3' C A2389 55.219 135.437 124.088 1.00 33.03 O
ATOM 11 C2' C A2389 55.885 134.077 122.215 1.00 32.92 C
ATOM 12 O2' C A2389 54.519 134.214 121.894 1.00 33.90 O
ATOM 13 C1' C A2389 56.749 134.391 120.983 1.00 32.82 C
ATOM 14 N1 C A2389 58.043 133.665 120.990 1.00 31.65 N
ATOM 15 C2 C A2389 58.051 132.310 120.644 1.00 30.94 C
ATOM 16 O2 C A2389 57.002 131.797 120.228 1.00 29.33 O
ATOM 17 N3 C A2389 59.206 131.602 120.760 1.00 30.42 N
ATOM 18 C4 C A2389 60.327 132.218 121.163 1.00 31.27 C
ATOM 19 N4 C A2389 61.461 131.497 121.291 1.00 30.99 N
ATOM 20 C5 C A2389 60.349 133.605 121.461 1.00 28.54 C
ATOM 21 C6 C A2389 59.204 134.284 121.359 1.00 29.61 C
ATOM 22 P C A2390 55.315 134.752 125.527 1.00 32.40 P
ATOM 23 OP1 C A2390 54.369 135.398 126.442 1.00 31.56 O
ATOM 24 OP2 C A2390 56.745 134.744 125.852 1.00 33.82 O
ATOM 25 O5' C A2390 54.813 133.266 125.275 1.00 32.43 O
TER
ATOM 1 O3' U B2387 65.336 140.711 119.684 1.00 31.60 O
ATOM 2 P C B2388 64.607 140.697 121.108 1.00 30.15 P
ATOM 3 OP1 C B2388 64.283 142.110 121.406 1.00 31.61 O
ATOM 4 OP2 C B2388 65.405 139.923 122.075 1.00 32.06 O
ATOM 5 O5' C B2388 63.254 139.908 120.837 1.00 31.40 O
ATOM 6 C5' C B2388 62.105 140.589 120.320 1.00 32.93 C
ATOM 7 C4' C B2388 60.996 139.621 120.006 1.00 33.15 C
ATOM 8 O4' C B2388 61.440 138.714 118.969 1.00 34.27 O
ATOM 9 C3' C B2388 60.578 138.677 121.113 1.00 32.65 C
ATOM 10 O3' C B2388 59.679 139.241 122.035 1.00 32.04 O
ATOM 11 C2' C B2388 59.865 137.591 120.336 1.00 32.31 C
ATOM 12 O2' C B2388 58.569 137.970 119.961 1.00 30.28 O
ATOM 13 C1' C B2388 60.772 137.464 119.118 1.00 33.13 C
ATOM 14 N1 C B2388 61.771 136.429 119.411 1.00 34.02 N
ATOM 15 C2 C B2388 61.503 135.116 119.071 1.00 35.75 C
ATOM 16 O2 C B2388 60.413 134.834 118.536 1.00 35.60 O
ATOM 17 N3 C B2388 62.423 134.170 119.340 1.00 36.49 N
ATOM 18 C4 C B2388 63.571 134.497 119.924 1.00 34.80 C
ATOM 19 N4 C B2388 64.461 133.533 120.150 1.00 35.10 N
ATOM 20 C5 C B2388 63.862 135.823 120.295 1.00 35.05 C
ATOM 21 C6 C B2388 62.943 136.752 120.024 1.00 33.52 C
ATOM 22 P C B2389 59.384 138.474 123.418 1.00 33.62 P
ATOM 23 OP1 C B2389 58.694 139.423 124.296 1.00 31.49 O
ATOM 24 OP2 C B2389 60.654 137.854 123.855 1.00 32.94 O
ATOM 25 O5' C B2389 58.370 137.307 123.039 1.00 29.52 O
TER
ATOM 2 P C A2389 59.384 138.474 123.418 1.00 33.62 P
ATOM 3 OP1 C A2389 58.694 139.423 124.296 1.00 31.49 O
ATOM 4 OP2 C A2389 60.654 137.854 123.855 1.00 32.94 O
ATOM 5 O5' C A2389 58.370 137.307 123.039 1.00 29.52 O
ATOM 6 C5' C A2389 57.041 137.609 122.633 1.00 31.19 C
ATOM 7 C4' C A2389 56.332 136.369 122.158 1.00 32.34 C
ATOM 8 O4' C A2389 56.995 135.791 121.005 1.00 33.61 O
ATOM 9 C3' C A2389 56.254 135.221 123.138 1.00 32.06 C
ATOM 10 O3' C A2389 55.219 135.437 124.088 1.00 33.03 O
ATOM 11 C2' C A2389 55.885 134.077 122.215 1.00 32.92 C
ATOM 12 O2' C A2389 54.519 134.214 121.894 1.00 33.90 O
ATOM 13 C1' C A2389 56.749 134.391 120.983 1.00 32.82 C
ATOM 14 N1 C A2389 58.043 133.665 120.990 1.00 31.65 N
ATOM 15 C2 C A2389 58.051 132.310 120.644 1.00 30.94 C
ATOM 16 O2 C A2389 57.002 131.797 120.228 1.00 29.33 O
ATOM 17 N3 C A2389 59.206 131.602 120.760 1.00 30.42 N
ATOM 18 C4 C A2389 60.327 132.218 121.163 1.00 31.27 C
ATOM 19 N4 C A2389 61.461 131.497 121.291 1.00 30.99 N
ATOM 20 C5 C A2389 60.349 133.605 121.461 1.00 28.54 C
ATOM 21 C6 C A2389 59.204 134.284 121.359 1.00 29.61 C
ATOM 22 P C A2390 55.315 134.752 125.527 1.00 32.40 P
ATOM 23 OP1 C A2390 54.369 135.398 126.442 1.00 31.56 O
ATOM 24 OP2 C A2390 56.745 134.744 125.852 1.00 33.82 O
ATOM 25 O5' C A2390 54.813 133.266 125.275 1.00 32.43 O
TER
ATOM 1 O3' U B2387 65.336 140.711 119.684 1.00 31.60 O
ATOM 2 P C B2388 64.607 140.697 121.108 1.00 30.15 P
ATOM 3 OP1 C B2388 64.283 142.110 121.406 1.00 31.61 O
ATOM 4 OP2 C B2388 65.405 139.923 122.075 1.00 32.06 O
ATOM 5 O5' C B2388 63.254 139.908 120.837 1.00 31.40 O
ATOM 6 C5' C B2388 62.105 140.589 120.320 1.00 32.93 C
ATOM 7 C4' C B2388 60.996 139.621 120.006 1.00 33.15 C
ATOM 8 O4' C B2388 61.440 138.714 118.969 1.00 34.27 O
ATOM 9 C3' C B2388 60.578 138.677 121.113 1.00 32.65 C
ATOM 10 O3' C B2388 59.679 139.241 122.035 1.00 32.04 O
ATOM 11 C2' C B2388 59.865 137.591 120.336 1.00 32.31 C
ATOM 12 O2' C B2388 58.569 137.970 119.961 1.00 30.28 O
ATOM 13 C1' C B2388 60.772 137.464 119.118 1.00 33.13 C
ATOM 14 N1 C B2388 61.771 136.429 119.411 1.00 34.02 N
ATOM 15 C2 C B2388 61.503 135.116 119.071 1.00 35.75 C
ATOM 16 O2 C B2388 60.413 134.834 118.536 1.00 35.60 O
ATOM 17 N3 C B2388 62.423 134.170 119.340 1.00 36.49 N
ATOM 18 C4 C B2388 63.571 134.497 119.924 1.00 34.80 C
ATOM 19 N4 C B2388 64.461 133.533 120.150 1.00 35.10 N
ATOM 20 C5 C B2388 63.862 135.823 120.295 1.00 35.05 C
ATOM 21 C6 C B2388 62.943 136.752 120.024 1.00 33.52 C
ATOM 22 P C B2389 59.384 138.474 123.418 1.00 33.62 P
ATOM 23 OP1 C B2389 58.694 139.423 124.296 1.00 31.49 O
ATOM 24 OP2 C B2389 60.654 137.854 123.855 1.00 32.94 O
ATOM 25 O5' C B2389 58.370 137.307 123.039 1.00 29.52 O
TER
Atoms:
C2: (58.051,132.310,120.644)
OP1: (58.694,139.423,124.296)
OP2: (60.654,137.854,123.855)
C4: (60.327,132.218,121.163)
O5': (58.370,137.307,123.039)
C3': (56.254,135.221,123.138)
C1': (56.749,134.391,120.983)
O4': (56.995,135.791,121.005)
C5': (57.041,137.609,122.633)
P: (59.384,138.474,123.418)
O2: (57.002,131.797,120.228)
C4': (56.332,136.369,122.158)
C2': (55.885,134.077,122.215)
O2': (54.519,134.214,121.894)
N1: (58.043,133.665,120.990)
N3: (59.206,131.602,120.760)
N4: (61.461,131.497,121.291)
C6: (59.204,134.284,121.359)
C5: (60.349,133.605,121.461)
O3': (55.219,135.437,124.088)
OP1: (58.694,139.423,124.296)
OP2: (60.654,137.854,123.855)
C4: (60.327,132.218,121.163)
O5': (58.370,137.307,123.039)
C3': (56.254,135.221,123.138)
C1': (56.749,134.391,120.983)
O4': (56.995,135.791,121.005)
C5': (57.041,137.609,122.633)
P: (59.384,138.474,123.418)
O2: (57.002,131.797,120.228)
C4': (56.332,136.369,122.158)
C2': (55.885,134.077,122.215)
O2': (54.519,134.214,121.894)
N1: (58.043,133.665,120.990)
N3: (59.206,131.602,120.760)
N4: (61.461,131.497,121.291)
C6: (59.204,134.284,121.359)
C5: (60.349,133.605,121.461)
O3': (55.219,135.437,124.088)
C2: (61.503,135.116,119.071)
OP1: (64.283,142.110,121.406)
OP2: (65.405,139.923,122.075)
C4: (63.571,134.497,119.924)
O5': (63.254,139.908,120.837)
C3': (60.578,138.677,121.113)
C1': (60.772,137.464,119.118)
O4': (61.440,138.714,118.969)
C5': (62.105,140.589,120.320)
P: (64.607,140.697,121.108)
O2: (60.413,134.834,118.536)
C4': (60.996,139.621,120.006)
C2': (59.865,137.591,120.336)
O2': (58.569,137.970,119.961)
N1: (61.771,136.429,119.411)
N3: (62.423,134.170,119.340)
N4: (64.461,133.533,120.150)
C6: (62.943,136.752,120.024)
C5: (63.862,135.823,120.295)
O3': (59.679,139.241,122.035)
OP1: (64.283,142.110,121.406)
OP2: (65.405,139.923,122.075)
C4: (63.571,134.497,119.924)
O5': (63.254,139.908,120.837)
C3': (60.578,138.677,121.113)
C1': (60.772,137.464,119.118)
O4': (61.440,138.714,118.969)
C5': (62.105,140.589,120.320)
P: (64.607,140.697,121.108)
O2: (60.413,134.834,118.536)
C4': (60.996,139.621,120.006)
C2': (59.865,137.591,120.336)
O2': (58.569,137.970,119.961)
N1: (61.771,136.429,119.411)
N3: (62.423,134.170,119.340)
N4: (64.461,133.533,120.150)
C6: (62.943,136.752,120.024)
C5: (63.862,135.823,120.295)
O3': (59.679,139.241,122.035)
Image (generated by PyMOL):