Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A13:A30
Extra
PDB:
ATOM 1 O3' C A 12 10.047 -11.614 6.568 1.00 22.97 O
ATOM 2 P A A 13 11.009 -12.275 5.468 1.00 26.49 P
ATOM 3 OP1 A A 13 10.618 -11.752 4.135 1.00 27.95 O
ATOM 4 OP2 A A 13 11.029 -13.742 5.696 1.00 27.09 O
ATOM 5 O5' A A 13 12.451 -11.715 5.855 1.00 25.22 O
ATOM 6 C5' A A 13 13.585 -11.997 5.030 1.00 25.27 C
ATOM 7 C4' A A 13 14.855 -11.933 5.839 1.00 22.99 C
ATOM 8 O4' A A 13 14.948 -10.633 6.477 1.00 23.37 O
ATOM 9 C3' A A 13 14.966 -12.943 6.970 1.00 22.23 C
ATOM 10 O3' A A 13 16.348 -13.129 7.200 1.00 22.18 O
ATOM 11 C2' A A 13 14.396 -12.177 8.150 1.00 23.06 C
ATOM 12 O2' A A 13 14.870 -12.711 9.367 1.00 23.52 O
ATOM 13 C1' A A 13 14.974 -10.788 7.881 1.00 22.53 C
ATOM 14 N9 A A 13 14.264 -9.647 8.461 1.00 20.40 N
ATOM 15 C8 A A 13 12.980 -9.226 8.233 1.00 18.82 C
ATOM 16 N7 A A 13 12.670 -8.120 8.865 1.00 17.02 N
ATOM 17 C5 A A 13 13.821 -7.803 9.568 1.00 15.45 C
ATOM 18 C6 A A 13 14.150 -6.734 10.419 1.00 16.87 C
ATOM 19 N6 A A 13 13.316 -5.743 10.726 1.00 18.19 N
ATOM 20 N1 A A 13 15.388 -6.710 10.951 1.00 17.91 N
ATOM 21 C2 A A 13 16.237 -7.696 10.638 1.00 20.06 C
ATOM 22 N3 A A 13 16.046 -8.751 9.849 1.00 20.66 N
ATOM 23 C4 A A 13 14.804 -8.741 9.339 1.00 17.45 C
ATOM 24 P U A 14 17.031 -14.542 6.880 1.00 25.57 P
ATOM 25 OP1 U A 14 16.661 -14.965 5.496 1.00 23.28 O
ATOM 26 OP2 U A 14 16.709 -15.425 8.029 1.00 22.93 O
ATOM 27 O5' U A 14 18.589 -14.193 6.891 1.00 26.02 O
TER
ATOM 1 O3' G B 29 20.521 0.081 15.278 1.00 27.07 O
ATOM 2 P A B 30 20.974 0.851 16.613 1.00 35.06 P
ATOM 3 OP1 A B 30 22.230 1.578 16.296 1.00 35.48 O
ATOM 4 OP2 A B 30 20.919 -0.088 17.773 1.00 34.69 O
ATOM 5 O5' A B 30 19.860 1.951 16.856 1.00 32.53 O
ATOM 6 C5' A B 30 18.612 1.586 17.385 1.00 31.53 C
ATOM 7 C4' A B 30 17.531 1.931 16.409 1.00 30.56 C
ATOM 8 O4' A B 30 17.850 1.410 15.095 1.00 30.19 O
ATOM 9 C3' A B 30 16.183 1.326 16.735 1.00 31.19 C
ATOM 10 O3' A B 30 15.565 2.134 17.710 1.00 35.23 O
ATOM 11 C2' A B 30 15.486 1.332 15.383 1.00 29.11 C
ATOM 12 O2' A B 30 14.993 2.610 15.072 1.00 30.25 O
ATOM 13 C1' A B 30 16.653 1.025 14.438 1.00 27.56 C
ATOM 14 N9 A B 30 16.775 -0.382 14.067 1.00 24.23 N
ATOM 15 C8 A B 30 17.726 -1.279 14.479 1.00 24.10 C
ATOM 16 N7 A B 30 17.575 -2.481 13.973 1.00 22.65 N
ATOM 17 C5 A B 30 16.451 -2.364 13.175 1.00 20.59 C
ATOM 18 C6 A B 30 15.772 -3.286 12.363 1.00 20.20 C
ATOM 19 N6 A B 30 16.137 -4.556 12.213 1.00 18.73 N
ATOM 20 N1 A B 30 14.687 -2.850 11.696 1.00 22.68 N
ATOM 21 C2 A B 30 14.317 -1.565 11.843 1.00 24.70 C
ATOM 22 N3 A B 30 14.875 -0.603 12.579 1.00 23.02 N
ATOM 23 C4 A B 30 15.949 -1.075 13.225 1.00 22.23 C
ATOM 24 P G B 31 14.367 1.534 18.575 1.00 43.39 P
ATOM 25 OP1 G B 31 13.769 2.636 19.387 1.00 43.11 O
ATOM 26 OP2 G B 31 14.876 0.311 19.248 1.00 43.71 O
ATOM 27 O5' G B 31 13.336 1.090 17.453 1.00 36.55 O
TER
ATOM 2 P A A 13 11.009 -12.275 5.468 1.00 26.49 P
ATOM 3 OP1 A A 13 10.618 -11.752 4.135 1.00 27.95 O
ATOM 4 OP2 A A 13 11.029 -13.742 5.696 1.00 27.09 O
ATOM 5 O5' A A 13 12.451 -11.715 5.855 1.00 25.22 O
ATOM 6 C5' A A 13 13.585 -11.997 5.030 1.00 25.27 C
ATOM 7 C4' A A 13 14.855 -11.933 5.839 1.00 22.99 C
ATOM 8 O4' A A 13 14.948 -10.633 6.477 1.00 23.37 O
ATOM 9 C3' A A 13 14.966 -12.943 6.970 1.00 22.23 C
ATOM 10 O3' A A 13 16.348 -13.129 7.200 1.00 22.18 O
ATOM 11 C2' A A 13 14.396 -12.177 8.150 1.00 23.06 C
ATOM 12 O2' A A 13 14.870 -12.711 9.367 1.00 23.52 O
ATOM 13 C1' A A 13 14.974 -10.788 7.881 1.00 22.53 C
ATOM 14 N9 A A 13 14.264 -9.647 8.461 1.00 20.40 N
ATOM 15 C8 A A 13 12.980 -9.226 8.233 1.00 18.82 C
ATOM 16 N7 A A 13 12.670 -8.120 8.865 1.00 17.02 N
ATOM 17 C5 A A 13 13.821 -7.803 9.568 1.00 15.45 C
ATOM 18 C6 A A 13 14.150 -6.734 10.419 1.00 16.87 C
ATOM 19 N6 A A 13 13.316 -5.743 10.726 1.00 18.19 N
ATOM 20 N1 A A 13 15.388 -6.710 10.951 1.00 17.91 N
ATOM 21 C2 A A 13 16.237 -7.696 10.638 1.00 20.06 C
ATOM 22 N3 A A 13 16.046 -8.751 9.849 1.00 20.66 N
ATOM 23 C4 A A 13 14.804 -8.741 9.339 1.00 17.45 C
ATOM 24 P U A 14 17.031 -14.542 6.880 1.00 25.57 P
ATOM 25 OP1 U A 14 16.661 -14.965 5.496 1.00 23.28 O
ATOM 26 OP2 U A 14 16.709 -15.425 8.029 1.00 22.93 O
ATOM 27 O5' U A 14 18.589 -14.193 6.891 1.00 26.02 O
TER
ATOM 1 O3' G B 29 20.521 0.081 15.278 1.00 27.07 O
ATOM 2 P A B 30 20.974 0.851 16.613 1.00 35.06 P
ATOM 3 OP1 A B 30 22.230 1.578 16.296 1.00 35.48 O
ATOM 4 OP2 A B 30 20.919 -0.088 17.773 1.00 34.69 O
ATOM 5 O5' A B 30 19.860 1.951 16.856 1.00 32.53 O
ATOM 6 C5' A B 30 18.612 1.586 17.385 1.00 31.53 C
ATOM 7 C4' A B 30 17.531 1.931 16.409 1.00 30.56 C
ATOM 8 O4' A B 30 17.850 1.410 15.095 1.00 30.19 O
ATOM 9 C3' A B 30 16.183 1.326 16.735 1.00 31.19 C
ATOM 10 O3' A B 30 15.565 2.134 17.710 1.00 35.23 O
ATOM 11 C2' A B 30 15.486 1.332 15.383 1.00 29.11 C
ATOM 12 O2' A B 30 14.993 2.610 15.072 1.00 30.25 O
ATOM 13 C1' A B 30 16.653 1.025 14.438 1.00 27.56 C
ATOM 14 N9 A B 30 16.775 -0.382 14.067 1.00 24.23 N
ATOM 15 C8 A B 30 17.726 -1.279 14.479 1.00 24.10 C
ATOM 16 N7 A B 30 17.575 -2.481 13.973 1.00 22.65 N
ATOM 17 C5 A B 30 16.451 -2.364 13.175 1.00 20.59 C
ATOM 18 C6 A B 30 15.772 -3.286 12.363 1.00 20.20 C
ATOM 19 N6 A B 30 16.137 -4.556 12.213 1.00 18.73 N
ATOM 20 N1 A B 30 14.687 -2.850 11.696 1.00 22.68 N
ATOM 21 C2 A B 30 14.317 -1.565 11.843 1.00 24.70 C
ATOM 22 N3 A B 30 14.875 -0.603 12.579 1.00 23.02 N
ATOM 23 C4 A B 30 15.949 -1.075 13.225 1.00 22.23 C
ATOM 24 P G B 31 14.367 1.534 18.575 1.00 43.39 P
ATOM 25 OP1 G B 31 13.769 2.636 19.387 1.00 43.11 O
ATOM 26 OP2 G B 31 14.876 0.311 19.248 1.00 43.71 O
ATOM 27 O5' G B 31 13.336 1.090 17.453 1.00 36.55 O
TER
Atoms:
OP1: (10.618,-11.752,4.135)
OP2: (11.029,-13.742,5.696)
C3': (14.966,-12.943,6.970)
C1': (14.974,-10.788,7.881)
C5': (13.585,-11.997,5.030)
O4': (14.948,-10.633,6.477)
C8: (12.980,-9.226,8.233)
O2': (14.870,-12.711,9.367)
C6: (14.150,-6.734,10.419)
C5: (13.821,-7.803,9.568)
C4: (14.804,-8.741,9.339)
P: (11.009,-12.275,5.468)
C4': (14.855,-11.933,5.839)
C2': (14.396,-12.177,8.150)
C2: (16.237,-7.696,10.638)
N1: (15.388,-6.710,10.951)
N3: (16.046,-8.751,9.849)
N6: (13.316,-5.743,10.726)
N7: (12.670,-8.120,8.865)
N9: (14.264,-9.647,8.461)
O5': (12.451,-11.715,5.855)
O3': (16.348,-13.129,7.200)
OP2: (11.029,-13.742,5.696)
C3': (14.966,-12.943,6.970)
C1': (14.974,-10.788,7.881)
C5': (13.585,-11.997,5.030)
O4': (14.948,-10.633,6.477)
C8: (12.980,-9.226,8.233)
O2': (14.870,-12.711,9.367)
C6: (14.150,-6.734,10.419)
C5: (13.821,-7.803,9.568)
C4: (14.804,-8.741,9.339)
P: (11.009,-12.275,5.468)
C4': (14.855,-11.933,5.839)
C2': (14.396,-12.177,8.150)
C2: (16.237,-7.696,10.638)
N1: (15.388,-6.710,10.951)
N3: (16.046,-8.751,9.849)
N6: (13.316,-5.743,10.726)
N7: (12.670,-8.120,8.865)
N9: (14.264,-9.647,8.461)
O5': (12.451,-11.715,5.855)
O3': (16.348,-13.129,7.200)
OP1: (22.230,1.578,16.296)
OP2: (20.919,-0.088,17.773)
C3': (16.183,1.326,16.735)
C1': (16.653,1.025,14.438)
C5': (18.612,1.586,17.385)
O4': (17.850,1.410,15.095)
C8: (17.726,-1.279,14.479)
O2': (14.993,2.610,15.072)
C6: (15.772,-3.286,12.363)
C5: (16.451,-2.364,13.175)
C4: (15.949,-1.075,13.225)
P: (20.974,0.851,16.613)
C4': (17.531,1.931,16.409)
C2': (15.486,1.332,15.383)
C2: (14.317,-1.565,11.843)
N1: (14.687,-2.850,11.696)
N3: (14.875,-0.603,12.579)
N6: (16.137,-4.556,12.213)
N7: (17.575,-2.481,13.973)
N9: (16.775,-0.382,14.067)
O5': (19.860,1.951,16.856)
O3': (15.565,2.134,17.710)
OP2: (20.919,-0.088,17.773)
C3': (16.183,1.326,16.735)
C1': (16.653,1.025,14.438)
C5': (18.612,1.586,17.385)
O4': (17.850,1.410,15.095)
C8: (17.726,-1.279,14.479)
O2': (14.993,2.610,15.072)
C6: (15.772,-3.286,12.363)
C5: (16.451,-2.364,13.175)
C4: (15.949,-1.075,13.225)
P: (20.974,0.851,16.613)
C4': (17.531,1.931,16.409)
C2': (15.486,1.332,15.383)
C2: (14.317,-1.565,11.843)
N1: (14.687,-2.850,11.696)
N3: (14.875,-0.603,12.579)
N6: (16.137,-4.556,12.213)
N7: (17.575,-2.481,13.973)
N9: (16.775,-0.382,14.067)
O5': (19.860,1.951,16.856)
O3': (15.565,2.134,17.710)
Image (generated by PyMOL):