Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A473:A497
Extra
PDB:
ATOM 1 O3' A A 472 22.729 156.092 45.308 1.00 49.39 O
ATOM 2 P A A 473 24.217 156.588 45.698 1.00 50.02 P
ATOM 3 OP1 A A 473 24.743 157.273 44.495 1.00 50.32 O
ATOM 4 OP2 A A 473 24.964 155.421 46.249 1.00 47.94 O
ATOM 5 O5' A A 473 23.956 157.696 46.834 1.00 50.67 O
ATOM 6 C5' A A 473 24.940 158.728 47.178 1.00 50.74 C
ATOM 7 C4' A A 473 24.353 159.766 48.142 1.00 52.23 C
ATOM 8 O4' A A 473 23.839 159.118 49.344 1.00 52.23 O
ATOM 9 C3' A A 473 25.345 160.835 48.641 1.00 53.19 C
ATOM 10 O3' A A 473 24.703 162.074 48.996 1.00 54.34 O
ATOM 11 C2' A A 473 25.766 160.261 49.993 1.00 53.97 C
ATOM 12 O2' A A 473 26.260 161.230 50.907 1.00 56.88 O
ATOM 13 C1' A A 473 24.426 159.723 50.486 1.00 53.67 C
ATOM 14 N9 A A 473 24.449 158.770 51.604 1.00 52.92 N
ATOM 15 C8 A A 473 25.173 157.611 51.767 1.00 51.64 C
ATOM 16 N7 A A 473 24.906 156.979 52.883 1.00 51.45 N
ATOM 17 C5 A A 473 23.945 157.774 53.497 1.00 51.77 C
ATOM 18 C6 A A 473 23.217 157.640 54.699 1.00 51.86 C
ATOM 19 N6 A A 473 23.313 156.594 55.514 1.00 50.93 N
ATOM 20 N1 A A 473 22.355 158.627 55.027 1.00 52.68 N
ATOM 21 C2 A A 473 22.218 159.660 54.190 1.00 52.78 C
ATOM 22 N3 A A 473 22.816 159.883 53.027 1.00 51.69 N
ATOM 23 C4 A A 473 23.676 158.890 52.734 1.00 52.29 C
ATOM 24 P A A 474 23.967 162.985 47.891 1.00 54.74 P
ATOM 25 OP1 A A 474 23.881 162.257 46.605 1.00 53.78 O
ATOM 26 OP2 A A 474 24.557 164.353 47.930 1.00 54.83 O
ATOM 27 O5' A A 474 22.499 163.109 48.479 1.00 53.08 O
TER
ATOM 1 O3' A B 496 14.492 152.460 62.790 1.00 54.44 O
ATOM 2 P A B 497 14.635 153.859 63.519 1.00 53.45 P
ATOM 3 OP1 A B 497 13.892 153.786 64.787 1.00 56.10 O
ATOM 4 OP2 A B 497 14.310 154.893 62.529 1.00 55.07 O
ATOM 5 O5' A B 497 16.164 153.953 63.885 1.00 54.54 O
ATOM 6 C5' A B 497 17.110 154.187 62.873 1.00 55.89 C
ATOM 7 C4' A B 497 18.478 154.078 63.449 1.00 59.40 C
ATOM 8 O4' A B 497 19.445 154.370 62.417 1.00 59.48 O
ATOM 9 C3' A B 497 18.746 155.069 64.572 1.00 61.68 C
ATOM 10 O3' A B 497 19.668 154.536 65.510 1.00 65.28 O
ATOM 11 C2' A B 497 19.285 156.284 63.826 1.00 61.28 C
ATOM 12 O2' A B 497 20.212 157.029 64.590 1.00 61.28 O
ATOM 13 C1' A B 497 19.970 155.660 62.611 1.00 59.50 C
ATOM 14 N9 A B 497 19.750 156.422 61.383 1.00 57.94 N
ATOM 15 C8 A B 497 18.804 157.375 61.081 1.00 57.13 C
ATOM 16 N7 A B 497 18.954 157.905 59.895 1.00 56.62 N
ATOM 17 C5 A B 497 20.058 157.245 59.375 1.00 57.34 C
ATOM 18 C6 A B 497 20.752 157.360 58.150 1.00 58.24 C
ATOM 19 N6 A B 497 20.430 158.220 57.182 1.00 59.04 N
ATOM 20 N1 A B 497 21.814 156.553 57.956 1.00 57.34 N
ATOM 21 C2 A B 497 22.150 155.698 58.926 1.00 57.37 C
ATOM 22 N3 A B 497 21.584 155.501 60.109 1.00 56.85 N
ATOM 23 C4 A B 497 20.539 156.318 60.274 1.00 56.83 C
ATOM 24 P U B 498 19.452 154.788 67.090 1.00 68.50 P
ATOM 25 OP1 U B 498 18.008 154.816 67.458 1.00 66.58 O
ATOM 26 OP2 U B 498 20.324 155.922 67.481 1.00 67.72 O
ATOM 27 O5' U B 498 20.076 153.466 67.705 1.00 70.93 O
TER
ATOM 2 P A A 473 24.217 156.588 45.698 1.00 50.02 P
ATOM 3 OP1 A A 473 24.743 157.273 44.495 1.00 50.32 O
ATOM 4 OP2 A A 473 24.964 155.421 46.249 1.00 47.94 O
ATOM 5 O5' A A 473 23.956 157.696 46.834 1.00 50.67 O
ATOM 6 C5' A A 473 24.940 158.728 47.178 1.00 50.74 C
ATOM 7 C4' A A 473 24.353 159.766 48.142 1.00 52.23 C
ATOM 8 O4' A A 473 23.839 159.118 49.344 1.00 52.23 O
ATOM 9 C3' A A 473 25.345 160.835 48.641 1.00 53.19 C
ATOM 10 O3' A A 473 24.703 162.074 48.996 1.00 54.34 O
ATOM 11 C2' A A 473 25.766 160.261 49.993 1.00 53.97 C
ATOM 12 O2' A A 473 26.260 161.230 50.907 1.00 56.88 O
ATOM 13 C1' A A 473 24.426 159.723 50.486 1.00 53.67 C
ATOM 14 N9 A A 473 24.449 158.770 51.604 1.00 52.92 N
ATOM 15 C8 A A 473 25.173 157.611 51.767 1.00 51.64 C
ATOM 16 N7 A A 473 24.906 156.979 52.883 1.00 51.45 N
ATOM 17 C5 A A 473 23.945 157.774 53.497 1.00 51.77 C
ATOM 18 C6 A A 473 23.217 157.640 54.699 1.00 51.86 C
ATOM 19 N6 A A 473 23.313 156.594 55.514 1.00 50.93 N
ATOM 20 N1 A A 473 22.355 158.627 55.027 1.00 52.68 N
ATOM 21 C2 A A 473 22.218 159.660 54.190 1.00 52.78 C
ATOM 22 N3 A A 473 22.816 159.883 53.027 1.00 51.69 N
ATOM 23 C4 A A 473 23.676 158.890 52.734 1.00 52.29 C
ATOM 24 P A A 474 23.967 162.985 47.891 1.00 54.74 P
ATOM 25 OP1 A A 474 23.881 162.257 46.605 1.00 53.78 O
ATOM 26 OP2 A A 474 24.557 164.353 47.930 1.00 54.83 O
ATOM 27 O5' A A 474 22.499 163.109 48.479 1.00 53.08 O
TER
ATOM 1 O3' A B 496 14.492 152.460 62.790 1.00 54.44 O
ATOM 2 P A B 497 14.635 153.859 63.519 1.00 53.45 P
ATOM 3 OP1 A B 497 13.892 153.786 64.787 1.00 56.10 O
ATOM 4 OP2 A B 497 14.310 154.893 62.529 1.00 55.07 O
ATOM 5 O5' A B 497 16.164 153.953 63.885 1.00 54.54 O
ATOM 6 C5' A B 497 17.110 154.187 62.873 1.00 55.89 C
ATOM 7 C4' A B 497 18.478 154.078 63.449 1.00 59.40 C
ATOM 8 O4' A B 497 19.445 154.370 62.417 1.00 59.48 O
ATOM 9 C3' A B 497 18.746 155.069 64.572 1.00 61.68 C
ATOM 10 O3' A B 497 19.668 154.536 65.510 1.00 65.28 O
ATOM 11 C2' A B 497 19.285 156.284 63.826 1.00 61.28 C
ATOM 12 O2' A B 497 20.212 157.029 64.590 1.00 61.28 O
ATOM 13 C1' A B 497 19.970 155.660 62.611 1.00 59.50 C
ATOM 14 N9 A B 497 19.750 156.422 61.383 1.00 57.94 N
ATOM 15 C8 A B 497 18.804 157.375 61.081 1.00 57.13 C
ATOM 16 N7 A B 497 18.954 157.905 59.895 1.00 56.62 N
ATOM 17 C5 A B 497 20.058 157.245 59.375 1.00 57.34 C
ATOM 18 C6 A B 497 20.752 157.360 58.150 1.00 58.24 C
ATOM 19 N6 A B 497 20.430 158.220 57.182 1.00 59.04 N
ATOM 20 N1 A B 497 21.814 156.553 57.956 1.00 57.34 N
ATOM 21 C2 A B 497 22.150 155.698 58.926 1.00 57.37 C
ATOM 22 N3 A B 497 21.584 155.501 60.109 1.00 56.85 N
ATOM 23 C4 A B 497 20.539 156.318 60.274 1.00 56.83 C
ATOM 24 P U B 498 19.452 154.788 67.090 1.00 68.50 P
ATOM 25 OP1 U B 498 18.008 154.816 67.458 1.00 66.58 O
ATOM 26 OP2 U B 498 20.324 155.922 67.481 1.00 67.72 O
ATOM 27 O5' U B 498 20.076 153.466 67.705 1.00 70.93 O
TER
Atoms:
OP1: (24.743,157.273,44.495)
OP2: (24.964,155.421,46.249)
C3': (25.345,160.835,48.641)
C1': (24.426,159.723,50.486)
C5': (24.940,158.728,47.178)
O4': (23.839,159.118,49.344)
C8: (25.173,157.611,51.767)
O2': (26.260,161.230,50.907)
C6: (23.217,157.640,54.699)
C5: (23.945,157.774,53.497)
C4: (23.676,158.890,52.734)
P: (24.217,156.588,45.698)
C4': (24.353,159.766,48.142)
C2': (25.766,160.261,49.993)
C2: (22.218,159.660,54.190)
N1: (22.355,158.627,55.027)
N3: (22.816,159.883,53.027)
N6: (23.313,156.594,55.514)
N7: (24.906,156.979,52.883)
N9: (24.449,158.770,51.604)
O5': (23.956,157.696,46.834)
O3': (24.703,162.074,48.996)
OP2: (24.964,155.421,46.249)
C3': (25.345,160.835,48.641)
C1': (24.426,159.723,50.486)
C5': (24.940,158.728,47.178)
O4': (23.839,159.118,49.344)
C8: (25.173,157.611,51.767)
O2': (26.260,161.230,50.907)
C6: (23.217,157.640,54.699)
C5: (23.945,157.774,53.497)
C4: (23.676,158.890,52.734)
P: (24.217,156.588,45.698)
C4': (24.353,159.766,48.142)
C2': (25.766,160.261,49.993)
C2: (22.218,159.660,54.190)
N1: (22.355,158.627,55.027)
N3: (22.816,159.883,53.027)
N6: (23.313,156.594,55.514)
N7: (24.906,156.979,52.883)
N9: (24.449,158.770,51.604)
O5': (23.956,157.696,46.834)
O3': (24.703,162.074,48.996)
OP1: (13.892,153.786,64.787)
OP2: (14.310,154.893,62.529)
C3': (18.746,155.069,64.572)
C1': (19.970,155.660,62.611)
C5': (17.110,154.187,62.873)
O4': (19.445,154.370,62.417)
C8: (18.804,157.375,61.081)
O2': (20.212,157.029,64.590)
C6: (20.752,157.360,58.150)
C5: (20.058,157.245,59.375)
C4: (20.539,156.318,60.274)
P: (14.635,153.859,63.519)
C4': (18.478,154.078,63.449)
C2': (19.285,156.284,63.826)
C2: (22.150,155.698,58.926)
N1: (21.814,156.553,57.956)
N3: (21.584,155.501,60.109)
N6: (20.430,158.220,57.182)
N7: (18.954,157.905,59.895)
N9: (19.750,156.422,61.383)
O5': (16.164,153.953,63.885)
O3': (19.668,154.536,65.510)
OP2: (14.310,154.893,62.529)
C3': (18.746,155.069,64.572)
C1': (19.970,155.660,62.611)
C5': (17.110,154.187,62.873)
O4': (19.445,154.370,62.417)
C8: (18.804,157.375,61.081)
O2': (20.212,157.029,64.590)
C6: (20.752,157.360,58.150)
C5: (20.058,157.245,59.375)
C4: (20.539,156.318,60.274)
P: (14.635,153.859,63.519)
C4': (18.478,154.078,63.449)
C2': (19.285,156.284,63.826)
C2: (22.150,155.698,58.926)
N1: (21.814,156.553,57.956)
N3: (21.584,155.501,60.109)
N6: (20.430,158.220,57.182)
N7: (18.954,157.905,59.895)
N9: (19.750,156.422,61.383)
O5': (16.164,153.953,63.885)
O3': (19.668,154.536,65.510)
Image (generated by PyMOL):