Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A1413:A1409
Extra
PDB:
ATOM 1 O3' G A1412 2.024 -53.126 36.086 1.00 62.86 O
ATOM 2 P A A1413 0.592 -53.355 35.374 1.00 61.45 P
ATOM 3 OP1 A A1413 -0.417 -52.696 36.247 1.00 70.36 O
ATOM 4 OP2 A A1413 0.457 -54.808 35.070 1.00 65.46 O
ATOM 5 O5' A A1413 0.696 -52.577 33.976 1.00 54.10 O
ATOM 6 C5' A A1413 0.877 -51.158 33.925 1.00 62.11 C
ATOM 7 C4' A A1413 0.912 -50.657 32.486 1.00 64.94 C
ATOM 8 O4' A A1413 2.168 -50.987 31.840 1.00 66.92 O
ATOM 9 C3' A A1413 -0.153 -51.174 31.540 1.00 64.05 C
ATOM 10 O3' A A1413 -1.346 -50.435 31.668 1.00 63.79 O
ATOM 11 C2' A A1413 0.468 -50.952 30.168 1.00 66.56 C
ATOM 12 O2' A A1413 0.261 -49.639 29.695 1.00 69.57 O
ATOM 13 C1' A A1413 1.954 -51.183 30.452 1.00 67.83 C
ATOM 14 N9 A A1413 2.355 -52.548 30.130 1.00 62.11 N
ATOM 15 C8 A A1413 2.335 -53.609 30.993 1.00 61.09 C
ATOM 16 N7 A A1413 2.708 -54.736 30.453 1.00 62.37 N
ATOM 17 C5 A A1413 3.005 -54.401 29.147 1.00 58.67 C
ATOM 18 C6 A A1413 3.460 -55.159 28.079 1.00 62.19 C
ATOM 19 N6 A A1413 3.702 -56.472 28.171 1.00 58.73 N
ATOM 20 N1 A A1413 3.670 -54.529 26.901 1.00 63.35 N
ATOM 21 C2 A A1413 3.431 -53.207 26.829 1.00 60.35 C
ATOM 22 N3 A A1413 3.002 -52.380 27.775 1.00 63.18 N
ATOM 23 C4 A A1413 2.803 -53.050 28.930 1.00 60.26 C
ATOM 24 P C A1414 -2.715 -51.076 31.172 1.00 62.01 P
ATOM 25 OP1 C A1414 -3.728 -50.044 31.485 1.00 69.89 O
ATOM 26 OP2 C A1414 -2.848 -52.450 31.744 1.00 53.90 O
ATOM 27 O5' C A1414 -2.516 -51.232 29.596 1.00 69.77 O
TER
ATOM 1 O3' C B1408 2.432 -59.631 27.222 1.00 77.55 O
ATOM 2 P A B1409 2.039 -60.082 28.718 1.00 82.36 P
ATOM 3 OP1 A B1409 0.630 -60.589 28.734 1.00 65.42 O
ATOM 4 OP2 A B1409 2.443 -58.988 29.662 1.00 66.75 O
ATOM 5 O5' A B1409 3.039 -61.298 28.965 1.00 76.19 O
ATOM 6 C5' A B1409 2.916 -62.516 28.224 1.00 71.32 C
ATOM 7 C4' A B1409 4.250 -62.951 27.614 1.00 69.42 C
ATOM 8 O4' A B1409 4.575 -62.200 26.408 1.00 71.82 O
ATOM 9 C3' A B1409 5.511 -62.966 28.467 1.00 63.34 C
ATOM 10 O3' A B1409 6.275 -64.113 28.133 1.00 54.02 O
ATOM 11 C2' A B1409 6.295 -61.777 27.941 1.00 59.83 C
ATOM 12 O2' A B1409 7.685 -61.902 28.153 1.00 60.35 O
ATOM 13 C1' A B1409 5.930 -61.797 26.451 1.00 58.00 C
ATOM 14 N9 A B1409 6.030 -60.484 25.804 1.00 54.93 N
ATOM 15 C8 A B1409 6.146 -59.275 26.448 1.00 60.76 C
ATOM 16 N7 A B1409 6.163 -58.242 25.644 1.00 59.93 N
ATOM 17 C5 A B1409 6.060 -58.802 24.380 1.00 55.37 C
ATOM 18 C6 A B1409 6.000 -58.222 23.103 1.00 55.23 C
ATOM 19 N6 A B1409 6.009 -56.903 22.886 1.00 62.20 N
ATOM 20 N1 A B1409 5.911 -59.049 22.043 1.00 53.59 N
ATOM 21 C2 A B1409 5.870 -60.370 22.263 1.00 54.54 C
ATOM 22 N3 A B1409 5.904 -61.039 23.421 1.00 58.93 N
ATOM 23 C4 A B1409 5.999 -60.186 24.457 1.00 55.88 C
ATOM 24 P U B1410 6.940 -64.987 29.294 1.00 57.47 P
ATOM 25 OP1 U B1410 8.072 -65.803 28.778 1.00 54.75 O
ATOM 26 OP2 U B1410 5.790 -65.660 29.955 1.00 68.50 O
ATOM 27 O5' U B1410 7.559 -63.906 30.290 1.00 58.08 O
TER
ATOM 2 P A A1413 0.592 -53.355 35.374 1.00 61.45 P
ATOM 3 OP1 A A1413 -0.417 -52.696 36.247 1.00 70.36 O
ATOM 4 OP2 A A1413 0.457 -54.808 35.070 1.00 65.46 O
ATOM 5 O5' A A1413 0.696 -52.577 33.976 1.00 54.10 O
ATOM 6 C5' A A1413 0.877 -51.158 33.925 1.00 62.11 C
ATOM 7 C4' A A1413 0.912 -50.657 32.486 1.00 64.94 C
ATOM 8 O4' A A1413 2.168 -50.987 31.840 1.00 66.92 O
ATOM 9 C3' A A1413 -0.153 -51.174 31.540 1.00 64.05 C
ATOM 10 O3' A A1413 -1.346 -50.435 31.668 1.00 63.79 O
ATOM 11 C2' A A1413 0.468 -50.952 30.168 1.00 66.56 C
ATOM 12 O2' A A1413 0.261 -49.639 29.695 1.00 69.57 O
ATOM 13 C1' A A1413 1.954 -51.183 30.452 1.00 67.83 C
ATOM 14 N9 A A1413 2.355 -52.548 30.130 1.00 62.11 N
ATOM 15 C8 A A1413 2.335 -53.609 30.993 1.00 61.09 C
ATOM 16 N7 A A1413 2.708 -54.736 30.453 1.00 62.37 N
ATOM 17 C5 A A1413 3.005 -54.401 29.147 1.00 58.67 C
ATOM 18 C6 A A1413 3.460 -55.159 28.079 1.00 62.19 C
ATOM 19 N6 A A1413 3.702 -56.472 28.171 1.00 58.73 N
ATOM 20 N1 A A1413 3.670 -54.529 26.901 1.00 63.35 N
ATOM 21 C2 A A1413 3.431 -53.207 26.829 1.00 60.35 C
ATOM 22 N3 A A1413 3.002 -52.380 27.775 1.00 63.18 N
ATOM 23 C4 A A1413 2.803 -53.050 28.930 1.00 60.26 C
ATOM 24 P C A1414 -2.715 -51.076 31.172 1.00 62.01 P
ATOM 25 OP1 C A1414 -3.728 -50.044 31.485 1.00 69.89 O
ATOM 26 OP2 C A1414 -2.848 -52.450 31.744 1.00 53.90 O
ATOM 27 O5' C A1414 -2.516 -51.232 29.596 1.00 69.77 O
TER
ATOM 1 O3' C B1408 2.432 -59.631 27.222 1.00 77.55 O
ATOM 2 P A B1409 2.039 -60.082 28.718 1.00 82.36 P
ATOM 3 OP1 A B1409 0.630 -60.589 28.734 1.00 65.42 O
ATOM 4 OP2 A B1409 2.443 -58.988 29.662 1.00 66.75 O
ATOM 5 O5' A B1409 3.039 -61.298 28.965 1.00 76.19 O
ATOM 6 C5' A B1409 2.916 -62.516 28.224 1.00 71.32 C
ATOM 7 C4' A B1409 4.250 -62.951 27.614 1.00 69.42 C
ATOM 8 O4' A B1409 4.575 -62.200 26.408 1.00 71.82 O
ATOM 9 C3' A B1409 5.511 -62.966 28.467 1.00 63.34 C
ATOM 10 O3' A B1409 6.275 -64.113 28.133 1.00 54.02 O
ATOM 11 C2' A B1409 6.295 -61.777 27.941 1.00 59.83 C
ATOM 12 O2' A B1409 7.685 -61.902 28.153 1.00 60.35 O
ATOM 13 C1' A B1409 5.930 -61.797 26.451 1.00 58.00 C
ATOM 14 N9 A B1409 6.030 -60.484 25.804 1.00 54.93 N
ATOM 15 C8 A B1409 6.146 -59.275 26.448 1.00 60.76 C
ATOM 16 N7 A B1409 6.163 -58.242 25.644 1.00 59.93 N
ATOM 17 C5 A B1409 6.060 -58.802 24.380 1.00 55.37 C
ATOM 18 C6 A B1409 6.000 -58.222 23.103 1.00 55.23 C
ATOM 19 N6 A B1409 6.009 -56.903 22.886 1.00 62.20 N
ATOM 20 N1 A B1409 5.911 -59.049 22.043 1.00 53.59 N
ATOM 21 C2 A B1409 5.870 -60.370 22.263 1.00 54.54 C
ATOM 22 N3 A B1409 5.904 -61.039 23.421 1.00 58.93 N
ATOM 23 C4 A B1409 5.999 -60.186 24.457 1.00 55.88 C
ATOM 24 P U B1410 6.940 -64.987 29.294 1.00 57.47 P
ATOM 25 OP1 U B1410 8.072 -65.803 28.778 1.00 54.75 O
ATOM 26 OP2 U B1410 5.790 -65.660 29.955 1.00 68.50 O
ATOM 27 O5' U B1410 7.559 -63.906 30.290 1.00 58.08 O
TER
Atoms:
OP1: (-0.417,-52.696,36.247)
OP2: (0.457,-54.808,35.070)
C3': (-0.153,-51.174,31.540)
C1': (1.954,-51.183,30.452)
C5': (0.877,-51.158,33.925)
O4': (2.168,-50.987,31.840)
C8: (2.335,-53.609,30.993)
O2': (0.261,-49.639,29.695)
C6: (3.460,-55.159,28.079)
C5: (3.005,-54.401,29.147)
C4: (2.803,-53.050,28.930)
P: (0.592,-53.355,35.374)
C4': (0.912,-50.657,32.486)
C2': (0.468,-50.952,30.168)
C2: (3.431,-53.207,26.829)
N1: (3.670,-54.529,26.901)
N3: (3.002,-52.380,27.775)
N6: (3.702,-56.472,28.171)
N7: (2.708,-54.736,30.453)
N9: (2.355,-52.548,30.130)
O5': (0.696,-52.577,33.976)
O3': (-1.346,-50.435,31.668)
OP2: (0.457,-54.808,35.070)
C3': (-0.153,-51.174,31.540)
C1': (1.954,-51.183,30.452)
C5': (0.877,-51.158,33.925)
O4': (2.168,-50.987,31.840)
C8: (2.335,-53.609,30.993)
O2': (0.261,-49.639,29.695)
C6: (3.460,-55.159,28.079)
C5: (3.005,-54.401,29.147)
C4: (2.803,-53.050,28.930)
P: (0.592,-53.355,35.374)
C4': (0.912,-50.657,32.486)
C2': (0.468,-50.952,30.168)
C2: (3.431,-53.207,26.829)
N1: (3.670,-54.529,26.901)
N3: (3.002,-52.380,27.775)
N6: (3.702,-56.472,28.171)
N7: (2.708,-54.736,30.453)
N9: (2.355,-52.548,30.130)
O5': (0.696,-52.577,33.976)
O3': (-1.346,-50.435,31.668)
OP1: (0.630,-60.589,28.734)
OP2: (2.443,-58.988,29.662)
C3': (5.511,-62.966,28.467)
C1': (5.930,-61.797,26.451)
C5': (2.916,-62.516,28.224)
O4': (4.575,-62.200,26.408)
C8: (6.146,-59.275,26.448)
O2': (7.685,-61.902,28.153)
C6: (6.000,-58.222,23.103)
C5: (6.060,-58.802,24.380)
C4: (5.999,-60.186,24.457)
P: (2.039,-60.082,28.718)
C4': (4.250,-62.951,27.614)
C2': (6.295,-61.777,27.941)
C2: (5.870,-60.370,22.263)
N1: (5.911,-59.049,22.043)
N3: (5.904,-61.039,23.421)
N6: (6.009,-56.903,22.886)
N7: (6.163,-58.242,25.644)
N9: (6.030,-60.484,25.804)
O5': (3.039,-61.298,28.965)
O3': (6.275,-64.113,28.133)
OP2: (2.443,-58.988,29.662)
C3': (5.511,-62.966,28.467)
C1': (5.930,-61.797,26.451)
C5': (2.916,-62.516,28.224)
O4': (4.575,-62.200,26.408)
C8: (6.146,-59.275,26.448)
O2': (7.685,-61.902,28.153)
C6: (6.000,-58.222,23.103)
C5: (6.060,-58.802,24.380)
C4: (5.999,-60.186,24.457)
P: (2.039,-60.082,28.718)
C4': (4.250,-62.951,27.614)
C2': (6.295,-61.777,27.941)
C2: (5.870,-60.370,22.263)
N1: (5.911,-59.049,22.043)
N3: (5.904,-61.039,23.421)
N6: (6.009,-56.903,22.886)
N7: (6.163,-58.242,25.644)
N9: (6.030,-60.484,25.804)
O5': (3.039,-61.298,28.965)
O3': (6.275,-64.113,28.133)
Image (generated by PyMOL):