Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2828:A2872
Extra
PDB:
ATOM 1 O3' G A2827 -26.502 -89.990 -42.210 1.00 0.01 O
ATOM 2 P A A2828 -26.604 -89.070 -43.498 1.00 0.01 P
ATOM 3 OP1 A A2828 -28.007 -89.149 -43.968 1.00 0.01 O
ATOM 4 OP2 A A2828 -25.499 -89.481 -44.415 1.00 0.01 O
ATOM 5 O5' A A2828 -26.317 -87.629 -42.899 1.00 0.01 O
ATOM 6 C5' A A2828 -27.229 -86.560 -43.100 1.00 0.01 C
ATOM 7 C4' A A2828 -27.050 -85.489 -42.062 1.00 0.01 C
ATOM 8 O4' A A2828 -25.643 -85.315 -41.800 1.00 0.01 O
ATOM 9 C3' A A2828 -27.600 -84.124 -42.428 1.00 0.01 C
ATOM 10 O3' A A2828 -28.302 -83.594 -41.321 1.00 0.01 O
ATOM 11 C2' A A2828 -26.360 -83.273 -42.707 1.00 0.01 C
ATOM 12 O2' A A2828 -26.505 -81.921 -42.337 1.00 0.01 O
ATOM 13 C1' A A2828 -25.289 -83.951 -41.873 1.00 0.01 C
ATOM 14 N9 A A2828 -23.940 -83.896 -42.442 1.00 0.01 N
ATOM 15 C8 A A2828 -23.570 -84.269 -43.693 1.00 0.01 C
ATOM 16 N7 A A2828 -22.277 -84.209 -43.912 1.00 0.01 N
ATOM 17 C5 A A2828 -21.763 -83.792 -42.725 1.00 0.01 C
ATOM 18 C6 A A2828 -20.458 -83.573 -42.343 1.00 0.01 C
ATOM 19 N6 A A2828 -19.407 -83.722 -43.154 1.00 0.01 N
ATOM 20 N1 A A2828 -20.269 -83.171 -41.086 1.00 0.01 N
ATOM 21 C2 A A2828 -21.324 -83.022 -40.303 1.00 0.01 C
ATOM 22 N3 A A2828 -22.602 -83.233 -40.553 1.00 0.01 N
ATOM 23 C4 A A2828 -22.756 -83.617 -41.808 1.00 0.01 C
ATOM 24 P U A2829 -29.792 -84.087 -41.006 1.00 0.01 P
ATOM 25 OP1 U A2829 -29.801 -85.545 -41.118 1.00 0.01 O
ATOM 26 OP2 U A2829 -30.710 -83.310 -41.874 1.00 0.01 O
ATOM 27 O5' U A2829 -29.971 -83.661 -39.490 1.00 0.00 O
TER
ATOM 1 O3' U B2871 -16.869 -83.458 -46.128 1.00 0.01 O
ATOM 2 P A B2872 -17.219 -84.879 -45.516 1.00 0.01 P
ATOM 3 OP1 A B2872 -16.279 -85.859 -46.098 1.00 0.01 O
ATOM 4 OP2 A B2872 -18.661 -85.089 -45.708 1.00 0.01 O
ATOM 5 O5' A B2872 -16.917 -84.698 -43.972 1.00 0.01 O
ATOM 6 C5' A B2872 -16.263 -85.736 -43.268 1.00 0.01 C
ATOM 7 C4' A B2872 -15.991 -85.375 -41.844 1.00 0.01 C
ATOM 8 O4' A B2872 -17.239 -85.012 -41.216 1.00 0.01 O
ATOM 9 C3' A B2872 -15.414 -86.509 -41.007 1.00 0.01 C
ATOM 10 O3' A B2872 -14.544 -85.977 -40.015 1.00 0.01 O
ATOM 11 C2' A B2872 -16.651 -87.083 -40.335 1.00 0.01 C
ATOM 12 O2' A B2872 -16.387 -87.777 -39.136 1.00 0.01 O
ATOM 13 C1' A B2872 -17.435 -85.818 -40.079 1.00 0.01 C
ATOM 14 N9 A B2872 -18.869 -85.985 -39.886 1.00 0.01 N
ATOM 15 C8 A B2872 -19.555 -85.539 -38.781 1.00 0.01 C
ATOM 16 N7 A B2872 -20.849 -85.711 -38.840 1.00 0.01 N
ATOM 17 C5 A B2872 -21.017 -86.285 -40.084 1.00 0.01 C
ATOM 18 C6 A B2872 -22.160 -86.697 -40.754 1.00 0.01 C
ATOM 19 N6 A B2872 -23.385 -86.611 -40.257 1.00 0.01 N
ATOM 20 N1 A B2872 -21.987 -87.209 -41.969 1.00 0.01 N
ATOM 21 C2 A B2872 -20.769 -87.308 -42.462 1.00 0.01 C
ATOM 22 N3 A B2872 -19.628 -86.960 -41.932 1.00 0.01 N
ATOM 23 C4 A B2872 -19.816 -86.448 -40.736 1.00 0.01 C
ATOM 24 P C B2873 -13.007 -85.663 -40.343 1.00 0.01 P
ATOM 25 OP1 C B2873 -12.937 -85.285 -41.761 1.00 0.01 O
ATOM 26 OP2 C B2873 -12.199 -86.813 -39.860 1.00 0.01 O
ATOM 27 O5' C B2873 -12.731 -84.402 -39.439 1.00 0.01 O
TER
ATOM 2 P A A2828 -26.604 -89.070 -43.498 1.00 0.01 P
ATOM 3 OP1 A A2828 -28.007 -89.149 -43.968 1.00 0.01 O
ATOM 4 OP2 A A2828 -25.499 -89.481 -44.415 1.00 0.01 O
ATOM 5 O5' A A2828 -26.317 -87.629 -42.899 1.00 0.01 O
ATOM 6 C5' A A2828 -27.229 -86.560 -43.100 1.00 0.01 C
ATOM 7 C4' A A2828 -27.050 -85.489 -42.062 1.00 0.01 C
ATOM 8 O4' A A2828 -25.643 -85.315 -41.800 1.00 0.01 O
ATOM 9 C3' A A2828 -27.600 -84.124 -42.428 1.00 0.01 C
ATOM 10 O3' A A2828 -28.302 -83.594 -41.321 1.00 0.01 O
ATOM 11 C2' A A2828 -26.360 -83.273 -42.707 1.00 0.01 C
ATOM 12 O2' A A2828 -26.505 -81.921 -42.337 1.00 0.01 O
ATOM 13 C1' A A2828 -25.289 -83.951 -41.873 1.00 0.01 C
ATOM 14 N9 A A2828 -23.940 -83.896 -42.442 1.00 0.01 N
ATOM 15 C8 A A2828 -23.570 -84.269 -43.693 1.00 0.01 C
ATOM 16 N7 A A2828 -22.277 -84.209 -43.912 1.00 0.01 N
ATOM 17 C5 A A2828 -21.763 -83.792 -42.725 1.00 0.01 C
ATOM 18 C6 A A2828 -20.458 -83.573 -42.343 1.00 0.01 C
ATOM 19 N6 A A2828 -19.407 -83.722 -43.154 1.00 0.01 N
ATOM 20 N1 A A2828 -20.269 -83.171 -41.086 1.00 0.01 N
ATOM 21 C2 A A2828 -21.324 -83.022 -40.303 1.00 0.01 C
ATOM 22 N3 A A2828 -22.602 -83.233 -40.553 1.00 0.01 N
ATOM 23 C4 A A2828 -22.756 -83.617 -41.808 1.00 0.01 C
ATOM 24 P U A2829 -29.792 -84.087 -41.006 1.00 0.01 P
ATOM 25 OP1 U A2829 -29.801 -85.545 -41.118 1.00 0.01 O
ATOM 26 OP2 U A2829 -30.710 -83.310 -41.874 1.00 0.01 O
ATOM 27 O5' U A2829 -29.971 -83.661 -39.490 1.00 0.00 O
TER
ATOM 1 O3' U B2871 -16.869 -83.458 -46.128 1.00 0.01 O
ATOM 2 P A B2872 -17.219 -84.879 -45.516 1.00 0.01 P
ATOM 3 OP1 A B2872 -16.279 -85.859 -46.098 1.00 0.01 O
ATOM 4 OP2 A B2872 -18.661 -85.089 -45.708 1.00 0.01 O
ATOM 5 O5' A B2872 -16.917 -84.698 -43.972 1.00 0.01 O
ATOM 6 C5' A B2872 -16.263 -85.736 -43.268 1.00 0.01 C
ATOM 7 C4' A B2872 -15.991 -85.375 -41.844 1.00 0.01 C
ATOM 8 O4' A B2872 -17.239 -85.012 -41.216 1.00 0.01 O
ATOM 9 C3' A B2872 -15.414 -86.509 -41.007 1.00 0.01 C
ATOM 10 O3' A B2872 -14.544 -85.977 -40.015 1.00 0.01 O
ATOM 11 C2' A B2872 -16.651 -87.083 -40.335 1.00 0.01 C
ATOM 12 O2' A B2872 -16.387 -87.777 -39.136 1.00 0.01 O
ATOM 13 C1' A B2872 -17.435 -85.818 -40.079 1.00 0.01 C
ATOM 14 N9 A B2872 -18.869 -85.985 -39.886 1.00 0.01 N
ATOM 15 C8 A B2872 -19.555 -85.539 -38.781 1.00 0.01 C
ATOM 16 N7 A B2872 -20.849 -85.711 -38.840 1.00 0.01 N
ATOM 17 C5 A B2872 -21.017 -86.285 -40.084 1.00 0.01 C
ATOM 18 C6 A B2872 -22.160 -86.697 -40.754 1.00 0.01 C
ATOM 19 N6 A B2872 -23.385 -86.611 -40.257 1.00 0.01 N
ATOM 20 N1 A B2872 -21.987 -87.209 -41.969 1.00 0.01 N
ATOM 21 C2 A B2872 -20.769 -87.308 -42.462 1.00 0.01 C
ATOM 22 N3 A B2872 -19.628 -86.960 -41.932 1.00 0.01 N
ATOM 23 C4 A B2872 -19.816 -86.448 -40.736 1.00 0.01 C
ATOM 24 P C B2873 -13.007 -85.663 -40.343 1.00 0.01 P
ATOM 25 OP1 C B2873 -12.937 -85.285 -41.761 1.00 0.01 O
ATOM 26 OP2 C B2873 -12.199 -86.813 -39.860 1.00 0.01 O
ATOM 27 O5' C B2873 -12.731 -84.402 -39.439 1.00 0.01 O
TER
Atoms:
OP1: (-28.007,-89.149,-43.968)
OP2: (-25.499,-89.481,-44.415)
C3': (-27.600,-84.124,-42.428)
C1': (-25.289,-83.951,-41.873)
C5': (-27.229,-86.560,-43.100)
O4': (-25.643,-85.315,-41.800)
C8: (-23.570,-84.269,-43.693)
O2': (-26.505,-81.921,-42.337)
C6: (-20.458,-83.573,-42.343)
C5: (-21.763,-83.792,-42.725)
C4: (-22.756,-83.617,-41.808)
P: (-26.604,-89.070,-43.498)
C4': (-27.050,-85.489,-42.062)
C2': (-26.360,-83.273,-42.707)
C2: (-21.324,-83.022,-40.303)
N1: (-20.269,-83.171,-41.086)
N3: (-22.602,-83.233,-40.553)
N6: (-19.407,-83.722,-43.154)
N7: (-22.277,-84.209,-43.912)
N9: (-23.940,-83.896,-42.442)
O5': (-26.317,-87.629,-42.899)
O3': (-28.302,-83.594,-41.321)
OP2: (-25.499,-89.481,-44.415)
C3': (-27.600,-84.124,-42.428)
C1': (-25.289,-83.951,-41.873)
C5': (-27.229,-86.560,-43.100)
O4': (-25.643,-85.315,-41.800)
C8: (-23.570,-84.269,-43.693)
O2': (-26.505,-81.921,-42.337)
C6: (-20.458,-83.573,-42.343)
C5: (-21.763,-83.792,-42.725)
C4: (-22.756,-83.617,-41.808)
P: (-26.604,-89.070,-43.498)
C4': (-27.050,-85.489,-42.062)
C2': (-26.360,-83.273,-42.707)
C2: (-21.324,-83.022,-40.303)
N1: (-20.269,-83.171,-41.086)
N3: (-22.602,-83.233,-40.553)
N6: (-19.407,-83.722,-43.154)
N7: (-22.277,-84.209,-43.912)
N9: (-23.940,-83.896,-42.442)
O5': (-26.317,-87.629,-42.899)
O3': (-28.302,-83.594,-41.321)
OP1: (-16.279,-85.859,-46.098)
OP2: (-18.661,-85.089,-45.708)
C3': (-15.414,-86.509,-41.007)
C1': (-17.435,-85.818,-40.079)
C5': (-16.263,-85.736,-43.268)
O4': (-17.239,-85.012,-41.216)
C8: (-19.555,-85.539,-38.781)
O2': (-16.387,-87.777,-39.136)
C6: (-22.160,-86.697,-40.754)
C5: (-21.017,-86.285,-40.084)
C4: (-19.816,-86.448,-40.736)
P: (-17.219,-84.879,-45.516)
C4': (-15.991,-85.375,-41.844)
C2': (-16.651,-87.083,-40.335)
C2: (-20.769,-87.308,-42.462)
N1: (-21.987,-87.209,-41.969)
N3: (-19.628,-86.960,-41.932)
N6: (-23.385,-86.611,-40.257)
N7: (-20.849,-85.711,-38.840)
N9: (-18.869,-85.985,-39.886)
O5': (-16.917,-84.698,-43.972)
O3': (-14.544,-85.977,-40.015)
OP2: (-18.661,-85.089,-45.708)
C3': (-15.414,-86.509,-41.007)
C1': (-17.435,-85.818,-40.079)
C5': (-16.263,-85.736,-43.268)
O4': (-17.239,-85.012,-41.216)
C8: (-19.555,-85.539,-38.781)
O2': (-16.387,-87.777,-39.136)
C6: (-22.160,-86.697,-40.754)
C5: (-21.017,-86.285,-40.084)
C4: (-19.816,-86.448,-40.736)
P: (-17.219,-84.879,-45.516)
C4': (-15.991,-85.375,-41.844)
C2': (-16.651,-87.083,-40.335)
C2: (-20.769,-87.308,-42.462)
N1: (-21.987,-87.209,-41.969)
N3: (-19.628,-86.960,-41.932)
N6: (-23.385,-86.611,-40.257)
N7: (-20.849,-85.711,-38.840)
N9: (-18.869,-85.985,-39.886)
O5': (-16.917,-84.698,-43.972)
O3': (-14.544,-85.977,-40.015)
Image (generated by PyMOL):