Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12179:1589
Extra
PDB:
ATOM 1 O3' G A2178 44.331 -2.604 44.538 1.00 36.09 O
ATOM 2 P A A2179 42.957 -3.311 44.947 1.00 33.81 P
ATOM 3 OP1 A A2179 43.195 -4.755 44.953 1.00 33.78 O
ATOM 4 OP2 A A2179 41.891 -2.780 44.079 1.00 33.96 O
ATOM 5 O5' A A2179 42.725 -2.813 46.391 1.00 33.65 O
ATOM 6 C5' A A2179 41.555 -3.201 47.047 1.00 33.59 C
ATOM 7 C4' A A2179 41.480 -2.611 48.411 1.00 33.45 C
ATOM 8 O4' A A2179 42.287 -3.384 49.315 1.00 33.32 O
ATOM 9 C3' A A2179 41.934 -1.167 48.535 1.00 33.49 C
ATOM 10 O3' A A2179 40.778 -0.336 48.631 1.00 33.54 O
ATOM 11 C2' A A2179 42.714 -1.136 49.867 1.00 33.34 C
ATOM 12 O2' A A2179 42.141 -0.263 50.799 1.00 33.30 O
ATOM 13 C1' A A2179 42.651 -2.588 50.390 1.00 33.24 C
ATOM 14 N9 A A2179 43.911 -3.142 50.918 1.00 33.16 N
ATOM 15 C8 A A2179 45.158 -3.205 50.320 1.00 33.21 C
ATOM 16 N7 A A2179 46.069 -3.852 50.999 1.00 33.13 N
ATOM 17 C5 A A2179 45.403 -4.287 52.124 1.00 33.02 C
ATOM 18 C6 A A2179 45.813 -5.021 53.272 1.00 32.92 C
ATOM 19 N6 A A2179 47.042 -5.500 53.487 1.00 32.91 N
ATOM 20 N1 A A2179 44.859 -5.278 54.225 1.00 32.85 N
ATOM 21 C2 A A2179 43.638 -4.798 54.007 1.00 32.87 C
ATOM 22 N3 A A2179 43.172 -4.089 52.986 1.00 32.97 N
ATOM 23 C4 A A2179 44.086 -3.867 52.072 1.00 33.04 C
ATOM 24 P A A2180 40.727 1.152 47.999 1.00 36.05 P
ATOM 25 OP1 A A2180 42.039 1.836 48.245 1.00 36.04 O
ATOM 26 OP2 A A2180 39.484 1.791 48.533 1.00 36.07 O
ATOM 27 O5' A A2180 40.619 0.932 46.450 1.00 36.22 O
TER
ATOM 1 O3' G B 588 49.274 -6.936 49.984 1.00 35.14 O
ATOM 2 P A B 589 50.238 -6.214 51.059 1.00 35.58 P
ATOM 3 OP1 A B 589 51.498 -5.881 50.329 1.00 35.68 O
ATOM 4 OP2 A B 589 50.310 -7.108 52.255 1.00 35.48 O
ATOM 5 O5' A B 589 49.478 -4.869 51.429 1.00 35.55 O
ATOM 6 C5' A B 589 49.507 -3.783 50.536 1.00 35.65 C
ATOM 7 C4' A B 589 49.646 -2.458 51.236 1.00 35.63 C
ATOM 8 O4' A B 589 48.467 -2.207 52.025 1.00 35.55 O
ATOM 9 C3' A B 589 50.852 -2.260 52.162 1.00 35.59 C
ATOM 10 O3' A B 589 51.408 -0.974 51.911 1.00 35.67 O
ATOM 11 C2' A B 589 50.224 -2.231 53.548 1.00 35.47 C
ATOM 12 O2' A B 589 50.908 -1.408 54.443 1.00 35.46 O
ATOM 13 C1' A B 589 48.832 -1.669 53.261 1.00 35.48 C
ATOM 14 N9 A B 589 47.806 -2.048 54.230 1.00 35.39 N
ATOM 15 C8 A B 589 48.060 -2.902 55.231 1.00 35.30 C
ATOM 16 N7 A B 589 47.050 -3.093 56.005 1.00 35.24 N
ATOM 17 C5 A B 589 46.017 -2.341 55.450 1.00 35.29 C
ATOM 18 C6 A B 589 44.676 -2.163 55.853 1.00 35.27 C
ATOM 19 N6 A B 589 44.309 -2.840 56.927 1.00 35.19 N
ATOM 20 N1 A B 589 43.792 -1.368 55.184 1.00 35.34 N
ATOM 21 C2 A B 589 44.358 -0.768 54.152 1.00 35.43 C
ATOM 22 N3 A B 589 45.634 -0.853 53.680 1.00 35.46 N
ATOM 23 C4 A B 589 46.462 -1.685 54.353 1.00 35.38 C
ATOM 24 P A B 590 52.895 -0.791 51.280 1.00 32.74 P
ATOM 25 OP1 A B 590 52.927 -1.542 49.970 1.00 32.82 O
ATOM 26 OP2 A B 590 53.921 -1.131 52.394 1.00 32.68 O
ATOM 27 O5' A B 590 52.984 0.767 51.025 1.00 32.84 O
TER
ATOM 2 P A A2179 42.957 -3.311 44.947 1.00 33.81 P
ATOM 3 OP1 A A2179 43.195 -4.755 44.953 1.00 33.78 O
ATOM 4 OP2 A A2179 41.891 -2.780 44.079 1.00 33.96 O
ATOM 5 O5' A A2179 42.725 -2.813 46.391 1.00 33.65 O
ATOM 6 C5' A A2179 41.555 -3.201 47.047 1.00 33.59 C
ATOM 7 C4' A A2179 41.480 -2.611 48.411 1.00 33.45 C
ATOM 8 O4' A A2179 42.287 -3.384 49.315 1.00 33.32 O
ATOM 9 C3' A A2179 41.934 -1.167 48.535 1.00 33.49 C
ATOM 10 O3' A A2179 40.778 -0.336 48.631 1.00 33.54 O
ATOM 11 C2' A A2179 42.714 -1.136 49.867 1.00 33.34 C
ATOM 12 O2' A A2179 42.141 -0.263 50.799 1.00 33.30 O
ATOM 13 C1' A A2179 42.651 -2.588 50.390 1.00 33.24 C
ATOM 14 N9 A A2179 43.911 -3.142 50.918 1.00 33.16 N
ATOM 15 C8 A A2179 45.158 -3.205 50.320 1.00 33.21 C
ATOM 16 N7 A A2179 46.069 -3.852 50.999 1.00 33.13 N
ATOM 17 C5 A A2179 45.403 -4.287 52.124 1.00 33.02 C
ATOM 18 C6 A A2179 45.813 -5.021 53.272 1.00 32.92 C
ATOM 19 N6 A A2179 47.042 -5.500 53.487 1.00 32.91 N
ATOM 20 N1 A A2179 44.859 -5.278 54.225 1.00 32.85 N
ATOM 21 C2 A A2179 43.638 -4.798 54.007 1.00 32.87 C
ATOM 22 N3 A A2179 43.172 -4.089 52.986 1.00 32.97 N
ATOM 23 C4 A A2179 44.086 -3.867 52.072 1.00 33.04 C
ATOM 24 P A A2180 40.727 1.152 47.999 1.00 36.05 P
ATOM 25 OP1 A A2180 42.039 1.836 48.245 1.00 36.04 O
ATOM 26 OP2 A A2180 39.484 1.791 48.533 1.00 36.07 O
ATOM 27 O5' A A2180 40.619 0.932 46.450 1.00 36.22 O
TER
ATOM 1 O3' G B 588 49.274 -6.936 49.984 1.00 35.14 O
ATOM 2 P A B 589 50.238 -6.214 51.059 1.00 35.58 P
ATOM 3 OP1 A B 589 51.498 -5.881 50.329 1.00 35.68 O
ATOM 4 OP2 A B 589 50.310 -7.108 52.255 1.00 35.48 O
ATOM 5 O5' A B 589 49.478 -4.869 51.429 1.00 35.55 O
ATOM 6 C5' A B 589 49.507 -3.783 50.536 1.00 35.65 C
ATOM 7 C4' A B 589 49.646 -2.458 51.236 1.00 35.63 C
ATOM 8 O4' A B 589 48.467 -2.207 52.025 1.00 35.55 O
ATOM 9 C3' A B 589 50.852 -2.260 52.162 1.00 35.59 C
ATOM 10 O3' A B 589 51.408 -0.974 51.911 1.00 35.67 O
ATOM 11 C2' A B 589 50.224 -2.231 53.548 1.00 35.47 C
ATOM 12 O2' A B 589 50.908 -1.408 54.443 1.00 35.46 O
ATOM 13 C1' A B 589 48.832 -1.669 53.261 1.00 35.48 C
ATOM 14 N9 A B 589 47.806 -2.048 54.230 1.00 35.39 N
ATOM 15 C8 A B 589 48.060 -2.902 55.231 1.00 35.30 C
ATOM 16 N7 A B 589 47.050 -3.093 56.005 1.00 35.24 N
ATOM 17 C5 A B 589 46.017 -2.341 55.450 1.00 35.29 C
ATOM 18 C6 A B 589 44.676 -2.163 55.853 1.00 35.27 C
ATOM 19 N6 A B 589 44.309 -2.840 56.927 1.00 35.19 N
ATOM 20 N1 A B 589 43.792 -1.368 55.184 1.00 35.34 N
ATOM 21 C2 A B 589 44.358 -0.768 54.152 1.00 35.43 C
ATOM 22 N3 A B 589 45.634 -0.853 53.680 1.00 35.46 N
ATOM 23 C4 A B 589 46.462 -1.685 54.353 1.00 35.38 C
ATOM 24 P A B 590 52.895 -0.791 51.280 1.00 32.74 P
ATOM 25 OP1 A B 590 52.927 -1.542 49.970 1.00 32.82 O
ATOM 26 OP2 A B 590 53.921 -1.131 52.394 1.00 32.68 O
ATOM 27 O5' A B 590 52.984 0.767 51.025 1.00 32.84 O
TER
Atoms:
OP1: (43.195,-4.755,44.953)
OP2: (41.891,-2.780,44.079)
C3': (41.934,-1.167,48.535)
C1': (42.651,-2.588,50.390)
C5': (41.555,-3.201,47.047)
O4': (42.287,-3.384,49.315)
C8: (45.158,-3.205,50.320)
O2': (42.141,-0.263,50.799)
C6: (45.813,-5.021,53.272)
C5: (45.403,-4.287,52.124)
C4: (44.086,-3.867,52.072)
P: (42.957,-3.311,44.947)
C4': (41.480,-2.611,48.411)
C2': (42.714,-1.136,49.867)
C2: (43.638,-4.798,54.007)
N1: (44.859,-5.278,54.225)
N3: (43.172,-4.089,52.986)
N6: (47.042,-5.500,53.487)
N7: (46.069,-3.852,50.999)
N9: (43.911,-3.142,50.918)
O5': (42.725,-2.813,46.391)
O3': (40.778,-0.336,48.631)
OP2: (41.891,-2.780,44.079)
C3': (41.934,-1.167,48.535)
C1': (42.651,-2.588,50.390)
C5': (41.555,-3.201,47.047)
O4': (42.287,-3.384,49.315)
C8: (45.158,-3.205,50.320)
O2': (42.141,-0.263,50.799)
C6: (45.813,-5.021,53.272)
C5: (45.403,-4.287,52.124)
C4: (44.086,-3.867,52.072)
P: (42.957,-3.311,44.947)
C4': (41.480,-2.611,48.411)
C2': (42.714,-1.136,49.867)
C2: (43.638,-4.798,54.007)
N1: (44.859,-5.278,54.225)
N3: (43.172,-4.089,52.986)
N6: (47.042,-5.500,53.487)
N7: (46.069,-3.852,50.999)
N9: (43.911,-3.142,50.918)
O5': (42.725,-2.813,46.391)
O3': (40.778,-0.336,48.631)
OP1: (51.498,-5.881,50.329)
OP2: (50.310,-7.108,52.255)
C3': (50.852,-2.260,52.162)
C1': (48.832,-1.669,53.261)
C5': (49.507,-3.783,50.536)
O4': (48.467,-2.207,52.025)
C8: (48.060,-2.902,55.231)
O2': (50.908,-1.408,54.443)
C6: (44.676,-2.163,55.853)
C5: (46.017,-2.341,55.450)
C4: (46.462,-1.685,54.353)
P: (50.238,-6.214,51.059)
C4': (49.646,-2.458,51.236)
C2': (50.224,-2.231,53.548)
C2: (44.358,-0.768,54.152)
N1: (43.792,-1.368,55.184)
N3: (45.634,-0.853,53.680)
N6: (44.309,-2.840,56.927)
N7: (47.050,-3.093,56.005)
N9: (47.806,-2.048,54.230)
O5': (49.478,-4.869,51.429)
O3': (51.408,-0.974,51.911)
OP2: (50.310,-7.108,52.255)
C3': (50.852,-2.260,52.162)
C1': (48.832,-1.669,53.261)
C5': (49.507,-3.783,50.536)
O4': (48.467,-2.207,52.025)
C8: (48.060,-2.902,55.231)
O2': (50.908,-1.408,54.443)
C6: (44.676,-2.163,55.853)
C5: (46.017,-2.341,55.450)
C4: (46.462,-1.685,54.353)
P: (50.238,-6.214,51.059)
C4': (49.646,-2.458,51.236)
C2': (50.224,-2.231,53.548)
C2: (44.358,-0.768,54.152)
N1: (43.792,-1.368,55.184)
N3: (45.634,-0.853,53.680)
N6: (44.309,-2.840,56.927)
N7: (47.050,-3.093,56.005)
N9: (47.806,-2.048,54.230)
O5': (49.478,-4.869,51.429)
O3': (51.408,-0.974,51.911)
Image (generated by PyMOL):