Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12380:12378
Extra
PDB:
ATOM 1 O3' C A2379 28.950 -35.267 62.035 1.00 38.21 O
ATOM 2 P A A2380 30.040 -36.198 61.369 1.00 42.12 P
ATOM 3 OP1 A A2380 31.281 -36.020 62.178 1.00 42.00 O
ATOM 4 OP2 A A2380 30.063 -35.854 59.938 1.00 42.13 O
ATOM 5 O5' A A2380 29.463 -37.669 61.574 1.00 42.40 O
ATOM 6 C5' A A2380 30.026 -38.548 62.535 1.00 42.49 C
ATOM 7 C4' A A2380 29.435 -39.929 62.439 1.00 42.78 C
ATOM 8 O4' A A2380 28.061 -39.919 62.910 1.00 42.83 O
ATOM 9 C3' A A2380 29.319 -40.532 61.042 1.00 42.96 C
ATOM 10 O3' A A2380 30.517 -41.087 60.580 1.00 43.04 O
ATOM 11 C2' A A2380 28.266 -41.572 61.253 1.00 43.22 C
ATOM 12 O2' A A2380 28.806 -42.637 62.022 1.00 43.37 O
ATOM 13 C1' A A2380 27.294 -40.803 62.125 1.00 43.08 C
ATOM 14 N9 A A2380 26.363 -40.004 61.314 1.00 43.02 N
ATOM 15 C8 A A2380 26.464 -38.656 61.102 1.00 42.77 C
ATOM 16 N7 A A2380 25.489 -38.186 60.360 1.00 42.80 N
ATOM 17 C5 A A2380 24.695 -39.291 60.073 1.00 43.07 C
ATOM 18 C6 A A2380 23.535 -39.435 59.309 1.00 43.24 C
ATOM 19 N6 A A2380 22.935 -38.446 58.689 1.00 43.14 N
ATOM 20 N1 A A2380 22.992 -40.654 59.196 1.00 43.52 N
ATOM 21 C2 A A2380 23.613 -41.670 59.824 1.00 43.63 C
ATOM 22 N3 A A2380 24.711 -41.659 60.565 1.00 43.51 N
ATOM 23 C4 A A2380 25.219 -40.422 60.655 1.00 43.22 C
ATOM 24 P U A2381 30.811 -41.151 59.014 1.00 40.22 P
ATOM 25 OP1 U A2381 32.209 -41.693 58.864 1.00 40.28 O
ATOM 26 OP2 U A2381 30.482 -39.816 58.440 1.00 40.01 O
ATOM 27 O5' U A2381 29.754 -42.201 58.522 1.00 40.52 O
TER
ATOM 1 O3' C B2377 22.032 -33.185 57.348 1.00 47.41 O
ATOM 2 P A B2378 22.654 -34.589 56.919 1.00 49.39 P
ATOM 3 OP1 A B2378 21.694 -35.268 56.072 1.00 49.65 O
ATOM 4 OP2 A B2378 23.119 -35.274 58.141 1.00 49.37 O
ATOM 5 O5' A B2378 23.892 -34.130 56.043 1.00 49.28 O
ATOM 6 C5' A B2378 24.981 -33.378 56.618 1.00 49.03 C
ATOM 7 C4' A B2378 25.628 -32.487 55.597 1.00 48.93 C
ATOM 8 O4' A B2378 24.612 -31.836 54.821 1.00 48.98 O
ATOM 9 C3' A B2378 26.469 -31.378 56.151 1.00 48.66 C
ATOM 10 O3' A B2378 27.786 -31.803 56.310 1.00 48.62 O
ATOM 11 C2' A B2378 26.330 -30.261 55.115 1.00 48.61 C
ATOM 12 O2' A B2378 27.244 -30.459 54.045 1.00 48.66 O
ATOM 13 C1' A B2378 24.930 -30.498 54.584 1.00 48.79 C
ATOM 14 N9 A B2378 23.898 -29.663 55.238 1.00 48.71 N
ATOM 15 C8 A B2378 23.888 -29.071 56.488 1.00 48.54 C
ATOM 16 N7 A B2378 22.747 -28.432 56.778 1.00 48.54 N
ATOM 17 C5 A B2378 21.936 -28.630 55.657 1.00 48.72 C
ATOM 18 C6 A B2378 20.638 -28.192 55.334 1.00 48.83 C
ATOM 19 N6 A B2378 19.832 -27.421 56.088 1.00 48.76 N
ATOM 20 N1 A B2378 20.196 -28.588 54.143 1.00 49.03 N
ATOM 21 C2 A B2378 20.961 -29.313 53.340 1.00 49.12 C
ATOM 22 N3 A B2378 22.162 -29.770 53.517 1.00 49.04 N
ATOM 23 C4 A B2378 22.624 -29.393 54.710 1.00 48.84 C
ATOM 24 P C B2379 28.602 -31.448 57.617 1.00 37.89 P
ATOM 25 OP1 C B2379 28.675 -29.966 57.669 1.00 37.68 O
ATOM 26 OP2 C B2379 29.899 -32.251 57.562 1.00 37.93 O
ATOM 27 O5' C B2379 27.634 -31.989 58.805 1.00 37.95 O
TER
ATOM 2 P A A2380 30.040 -36.198 61.369 1.00 42.12 P
ATOM 3 OP1 A A2380 31.281 -36.020 62.178 1.00 42.00 O
ATOM 4 OP2 A A2380 30.063 -35.854 59.938 1.00 42.13 O
ATOM 5 O5' A A2380 29.463 -37.669 61.574 1.00 42.40 O
ATOM 6 C5' A A2380 30.026 -38.548 62.535 1.00 42.49 C
ATOM 7 C4' A A2380 29.435 -39.929 62.439 1.00 42.78 C
ATOM 8 O4' A A2380 28.061 -39.919 62.910 1.00 42.83 O
ATOM 9 C3' A A2380 29.319 -40.532 61.042 1.00 42.96 C
ATOM 10 O3' A A2380 30.517 -41.087 60.580 1.00 43.04 O
ATOM 11 C2' A A2380 28.266 -41.572 61.253 1.00 43.22 C
ATOM 12 O2' A A2380 28.806 -42.637 62.022 1.00 43.37 O
ATOM 13 C1' A A2380 27.294 -40.803 62.125 1.00 43.08 C
ATOM 14 N9 A A2380 26.363 -40.004 61.314 1.00 43.02 N
ATOM 15 C8 A A2380 26.464 -38.656 61.102 1.00 42.77 C
ATOM 16 N7 A A2380 25.489 -38.186 60.360 1.00 42.80 N
ATOM 17 C5 A A2380 24.695 -39.291 60.073 1.00 43.07 C
ATOM 18 C6 A A2380 23.535 -39.435 59.309 1.00 43.24 C
ATOM 19 N6 A A2380 22.935 -38.446 58.689 1.00 43.14 N
ATOM 20 N1 A A2380 22.992 -40.654 59.196 1.00 43.52 N
ATOM 21 C2 A A2380 23.613 -41.670 59.824 1.00 43.63 C
ATOM 22 N3 A A2380 24.711 -41.659 60.565 1.00 43.51 N
ATOM 23 C4 A A2380 25.219 -40.422 60.655 1.00 43.22 C
ATOM 24 P U A2381 30.811 -41.151 59.014 1.00 40.22 P
ATOM 25 OP1 U A2381 32.209 -41.693 58.864 1.00 40.28 O
ATOM 26 OP2 U A2381 30.482 -39.816 58.440 1.00 40.01 O
ATOM 27 O5' U A2381 29.754 -42.201 58.522 1.00 40.52 O
TER
ATOM 1 O3' C B2377 22.032 -33.185 57.348 1.00 47.41 O
ATOM 2 P A B2378 22.654 -34.589 56.919 1.00 49.39 P
ATOM 3 OP1 A B2378 21.694 -35.268 56.072 1.00 49.65 O
ATOM 4 OP2 A B2378 23.119 -35.274 58.141 1.00 49.37 O
ATOM 5 O5' A B2378 23.892 -34.130 56.043 1.00 49.28 O
ATOM 6 C5' A B2378 24.981 -33.378 56.618 1.00 49.03 C
ATOM 7 C4' A B2378 25.628 -32.487 55.597 1.00 48.93 C
ATOM 8 O4' A B2378 24.612 -31.836 54.821 1.00 48.98 O
ATOM 9 C3' A B2378 26.469 -31.378 56.151 1.00 48.66 C
ATOM 10 O3' A B2378 27.786 -31.803 56.310 1.00 48.62 O
ATOM 11 C2' A B2378 26.330 -30.261 55.115 1.00 48.61 C
ATOM 12 O2' A B2378 27.244 -30.459 54.045 1.00 48.66 O
ATOM 13 C1' A B2378 24.930 -30.498 54.584 1.00 48.79 C
ATOM 14 N9 A B2378 23.898 -29.663 55.238 1.00 48.71 N
ATOM 15 C8 A B2378 23.888 -29.071 56.488 1.00 48.54 C
ATOM 16 N7 A B2378 22.747 -28.432 56.778 1.00 48.54 N
ATOM 17 C5 A B2378 21.936 -28.630 55.657 1.00 48.72 C
ATOM 18 C6 A B2378 20.638 -28.192 55.334 1.00 48.83 C
ATOM 19 N6 A B2378 19.832 -27.421 56.088 1.00 48.76 N
ATOM 20 N1 A B2378 20.196 -28.588 54.143 1.00 49.03 N
ATOM 21 C2 A B2378 20.961 -29.313 53.340 1.00 49.12 C
ATOM 22 N3 A B2378 22.162 -29.770 53.517 1.00 49.04 N
ATOM 23 C4 A B2378 22.624 -29.393 54.710 1.00 48.84 C
ATOM 24 P C B2379 28.602 -31.448 57.617 1.00 37.89 P
ATOM 25 OP1 C B2379 28.675 -29.966 57.669 1.00 37.68 O
ATOM 26 OP2 C B2379 29.899 -32.251 57.562 1.00 37.93 O
ATOM 27 O5' C B2379 27.634 -31.989 58.805 1.00 37.95 O
TER
Atoms:
OP1: (31.281,-36.020,62.178)
OP2: (30.063,-35.854,59.938)
C3': (29.319,-40.532,61.042)
C1': (27.294,-40.803,62.125)
C5': (30.026,-38.548,62.535)
O4': (28.061,-39.919,62.910)
C8: (26.464,-38.656,61.102)
O2': (28.806,-42.637,62.022)
C6: (23.535,-39.435,59.309)
C5: (24.695,-39.291,60.073)
C4: (25.219,-40.422,60.655)
P: (30.040,-36.198,61.369)
C4': (29.435,-39.929,62.439)
C2': (28.266,-41.572,61.253)
C2: (23.613,-41.670,59.824)
N1: (22.992,-40.654,59.196)
N3: (24.711,-41.659,60.565)
N6: (22.935,-38.446,58.689)
N7: (25.489,-38.186,60.360)
N9: (26.363,-40.004,61.314)
O5': (29.463,-37.669,61.574)
O3': (30.517,-41.087,60.580)
OP2: (30.063,-35.854,59.938)
C3': (29.319,-40.532,61.042)
C1': (27.294,-40.803,62.125)
C5': (30.026,-38.548,62.535)
O4': (28.061,-39.919,62.910)
C8: (26.464,-38.656,61.102)
O2': (28.806,-42.637,62.022)
C6: (23.535,-39.435,59.309)
C5: (24.695,-39.291,60.073)
C4: (25.219,-40.422,60.655)
P: (30.040,-36.198,61.369)
C4': (29.435,-39.929,62.439)
C2': (28.266,-41.572,61.253)
C2: (23.613,-41.670,59.824)
N1: (22.992,-40.654,59.196)
N3: (24.711,-41.659,60.565)
N6: (22.935,-38.446,58.689)
N7: (25.489,-38.186,60.360)
N9: (26.363,-40.004,61.314)
O5': (29.463,-37.669,61.574)
O3': (30.517,-41.087,60.580)
OP1: (21.694,-35.268,56.072)
OP2: (23.119,-35.274,58.141)
C3': (26.469,-31.378,56.151)
C1': (24.930,-30.498,54.584)
C5': (24.981,-33.378,56.618)
O4': (24.612,-31.836,54.821)
C8: (23.888,-29.071,56.488)
O2': (27.244,-30.459,54.045)
C6: (20.638,-28.192,55.334)
C5: (21.936,-28.630,55.657)
C4: (22.624,-29.393,54.710)
P: (22.654,-34.589,56.919)
C4': (25.628,-32.487,55.597)
C2': (26.330,-30.261,55.115)
C2: (20.961,-29.313,53.340)
N1: (20.196,-28.588,54.143)
N3: (22.162,-29.770,53.517)
N6: (19.832,-27.421,56.088)
N7: (22.747,-28.432,56.778)
N9: (23.898,-29.663,55.238)
O5': (23.892,-34.130,56.043)
O3': (27.786,-31.803,56.310)
OP2: (23.119,-35.274,58.141)
C3': (26.469,-31.378,56.151)
C1': (24.930,-30.498,54.584)
C5': (24.981,-33.378,56.618)
O4': (24.612,-31.836,54.821)
C8: (23.888,-29.071,56.488)
O2': (27.244,-30.459,54.045)
C6: (20.638,-28.192,55.334)
C5: (21.936,-28.630,55.657)
C4: (22.624,-29.393,54.710)
P: (22.654,-34.589,56.919)
C4': (25.628,-32.487,55.597)
C2': (26.330,-30.261,55.115)
C2: (20.961,-29.313,53.340)
N1: (20.196,-28.588,54.143)
N3: (22.162,-29.770,53.517)
N6: (19.832,-27.421,56.088)
N7: (22.747,-28.432,56.778)
N9: (23.898,-29.663,55.238)
O5': (23.892,-34.130,56.043)
O3': (27.786,-31.803,56.310)
Image (generated by PyMOL):