Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2462:A2469
Extra
PDB:
ATOM 1 O3' A A2461 -120.164 -53.275 -34.767 1.00 0.01 O
ATOM 2 P A A2462 -120.918 -52.701 -36.048 1.00 3.72 P
ATOM 3 OP1 A A2462 -122.330 -53.190 -35.952 1.00 3.72 O
ATOM 4 OP2 A A2462 -120.101 -53.088 -37.236 1.00 3.72 O
ATOM 5 O5' A A2462 -120.862 -51.115 -35.812 1.00 3.72 O
ATOM 6 C5' A A2462 -122.039 -50.424 -35.435 1.00 3.72 C
ATOM 7 C4' A A2462 -121.789 -49.407 -34.364 1.00 3.72 C
ATOM 8 O4' A A2462 -120.889 -49.923 -33.361 1.00 3.72 O
ATOM 9 C3' A A2462 -121.107 -48.146 -34.797 1.00 3.72 C
ATOM 10 O3' A A2462 -121.916 -47.301 -35.569 1.00 3.72 O
ATOM 11 C2' A A2462 -120.613 -47.568 -33.478 1.00 3.72 C
ATOM 12 O2' A A2462 -121.646 -46.960 -32.718 1.00 3.72 O
ATOM 13 C1' A A2462 -120.167 -48.841 -32.781 1.00 3.72 C
ATOM 14 N9 A A2462 -118.755 -49.049 -33.021 1.00 3.36 N
ATOM 15 C8 A A2462 -118.140 -49.934 -33.849 1.00 3.36 C
ATOM 16 N7 A A2462 -116.840 -49.738 -33.853 1.00 3.36 N
ATOM 17 C5 A A2462 -116.619 -48.645 -33.024 1.00 3.36 C
ATOM 18 C6 A A2462 -115.462 -47.970 -32.620 1.00 3.36 C
ATOM 19 N6 A A2462 -114.237 -48.293 -33.011 1.00 3.36 N
ATOM 20 N1 A A2462 -115.621 -46.924 -31.796 1.00 3.36 N
ATOM 21 C2 A A2462 -116.865 -46.610 -31.415 1.00 3.36 C
ATOM 22 N3 A A2462 -118.031 -47.175 -31.713 1.00 3.36 N
ATOM 23 C4 A A2462 -117.817 -48.201 -32.527 1.00 3.36 C
ATOM 24 P G A2463 -121.577 -47.168 -37.129 1.00 1.79 P
ATOM 25 OP1 G A2463 -122.766 -46.580 -37.809 1.00 1.79 O
ATOM 26 OP2 G A2463 -121.086 -48.511 -37.578 1.00 1.79 O
ATOM 27 O5' G A2463 -120.371 -46.128 -37.121 1.00 1.79 O
TER
ATOM 1 O3' C B2468 -118.837 -51.311 -45.361 1.00 11.54 O
ATOM 2 P A B2469 -119.810 -51.138 -44.117 1.00 8.19 P
ATOM 3 OP1 A B2469 -120.653 -52.347 -44.082 1.00 8.19 O
ATOM 4 OP2 A B2469 -120.458 -49.812 -44.235 1.00 8.19 O
ATOM 5 O5' A B2469 -118.807 -51.129 -42.885 1.00 8.19 O
ATOM 6 C5' A B2469 -117.707 -52.028 -42.835 1.00 8.19 C
ATOM 7 C4' A B2469 -116.606 -51.509 -41.943 1.00 8.19 C
ATOM 8 O4' A B2469 -117.065 -51.465 -40.566 1.00 8.19 O
ATOM 9 C3' A B2469 -115.358 -52.355 -41.902 1.00 8.19 C
ATOM 10 O3' A B2469 -114.458 -52.029 -42.927 1.00 8.19 O
ATOM 11 C2' A B2469 -114.815 -52.093 -40.518 1.00 8.19 C
ATOM 12 O2' A B2469 -114.160 -50.839 -40.472 1.00 8.19 O
ATOM 13 C1' A B2469 -116.098 -52.001 -39.713 1.00 8.19 C
ATOM 14 N9 A B2469 -116.585 -53.324 -39.273 1.00 8.18 N
ATOM 15 C8 A B2469 -117.814 -53.791 -39.640 1.00 8.18 C
ATOM 16 N7 A B2469 -118.115 -54.970 -39.155 1.00 8.18 N
ATOM 17 C5 A B2469 -117.004 -55.336 -38.413 1.00 8.18 C
ATOM 18 C6 A B2469 -116.722 -56.500 -37.659 1.00 8.18 C
ATOM 19 N6 A B2469 -117.558 -57.537 -37.525 1.00 8.18 N
ATOM 20 N1 A B2469 -115.534 -56.570 -37.032 1.00 8.18 N
ATOM 21 C2 A B2469 -114.701 -55.531 -37.172 1.00 8.18 C
ATOM 22 N3 A B2469 -114.859 -54.393 -37.848 1.00 8.18 N
ATOM 23 C4 A B2469 -116.051 -54.331 -38.465 1.00 8.18 C
ATOM 24 P U B2470 -113.783 -53.191 -43.772 1.00 6.46 P
ATOM 25 OP1 U B2470 -112.981 -52.566 -44.848 1.00 6.46 O
ATOM 26 OP2 U B2470 -114.873 -54.122 -44.145 1.00 6.46 O
ATOM 27 O5' U B2470 -112.816 -53.857 -42.715 1.00 6.46 O
TER
ATOM 2 P A A2462 -120.918 -52.701 -36.048 1.00 3.72 P
ATOM 3 OP1 A A2462 -122.330 -53.190 -35.952 1.00 3.72 O
ATOM 4 OP2 A A2462 -120.101 -53.088 -37.236 1.00 3.72 O
ATOM 5 O5' A A2462 -120.862 -51.115 -35.812 1.00 3.72 O
ATOM 6 C5' A A2462 -122.039 -50.424 -35.435 1.00 3.72 C
ATOM 7 C4' A A2462 -121.789 -49.407 -34.364 1.00 3.72 C
ATOM 8 O4' A A2462 -120.889 -49.923 -33.361 1.00 3.72 O
ATOM 9 C3' A A2462 -121.107 -48.146 -34.797 1.00 3.72 C
ATOM 10 O3' A A2462 -121.916 -47.301 -35.569 1.00 3.72 O
ATOM 11 C2' A A2462 -120.613 -47.568 -33.478 1.00 3.72 C
ATOM 12 O2' A A2462 -121.646 -46.960 -32.718 1.00 3.72 O
ATOM 13 C1' A A2462 -120.167 -48.841 -32.781 1.00 3.72 C
ATOM 14 N9 A A2462 -118.755 -49.049 -33.021 1.00 3.36 N
ATOM 15 C8 A A2462 -118.140 -49.934 -33.849 1.00 3.36 C
ATOM 16 N7 A A2462 -116.840 -49.738 -33.853 1.00 3.36 N
ATOM 17 C5 A A2462 -116.619 -48.645 -33.024 1.00 3.36 C
ATOM 18 C6 A A2462 -115.462 -47.970 -32.620 1.00 3.36 C
ATOM 19 N6 A A2462 -114.237 -48.293 -33.011 1.00 3.36 N
ATOM 20 N1 A A2462 -115.621 -46.924 -31.796 1.00 3.36 N
ATOM 21 C2 A A2462 -116.865 -46.610 -31.415 1.00 3.36 C
ATOM 22 N3 A A2462 -118.031 -47.175 -31.713 1.00 3.36 N
ATOM 23 C4 A A2462 -117.817 -48.201 -32.527 1.00 3.36 C
ATOM 24 P G A2463 -121.577 -47.168 -37.129 1.00 1.79 P
ATOM 25 OP1 G A2463 -122.766 -46.580 -37.809 1.00 1.79 O
ATOM 26 OP2 G A2463 -121.086 -48.511 -37.578 1.00 1.79 O
ATOM 27 O5' G A2463 -120.371 -46.128 -37.121 1.00 1.79 O
TER
ATOM 1 O3' C B2468 -118.837 -51.311 -45.361 1.00 11.54 O
ATOM 2 P A B2469 -119.810 -51.138 -44.117 1.00 8.19 P
ATOM 3 OP1 A B2469 -120.653 -52.347 -44.082 1.00 8.19 O
ATOM 4 OP2 A B2469 -120.458 -49.812 -44.235 1.00 8.19 O
ATOM 5 O5' A B2469 -118.807 -51.129 -42.885 1.00 8.19 O
ATOM 6 C5' A B2469 -117.707 -52.028 -42.835 1.00 8.19 C
ATOM 7 C4' A B2469 -116.606 -51.509 -41.943 1.00 8.19 C
ATOM 8 O4' A B2469 -117.065 -51.465 -40.566 1.00 8.19 O
ATOM 9 C3' A B2469 -115.358 -52.355 -41.902 1.00 8.19 C
ATOM 10 O3' A B2469 -114.458 -52.029 -42.927 1.00 8.19 O
ATOM 11 C2' A B2469 -114.815 -52.093 -40.518 1.00 8.19 C
ATOM 12 O2' A B2469 -114.160 -50.839 -40.472 1.00 8.19 O
ATOM 13 C1' A B2469 -116.098 -52.001 -39.713 1.00 8.19 C
ATOM 14 N9 A B2469 -116.585 -53.324 -39.273 1.00 8.18 N
ATOM 15 C8 A B2469 -117.814 -53.791 -39.640 1.00 8.18 C
ATOM 16 N7 A B2469 -118.115 -54.970 -39.155 1.00 8.18 N
ATOM 17 C5 A B2469 -117.004 -55.336 -38.413 1.00 8.18 C
ATOM 18 C6 A B2469 -116.722 -56.500 -37.659 1.00 8.18 C
ATOM 19 N6 A B2469 -117.558 -57.537 -37.525 1.00 8.18 N
ATOM 20 N1 A B2469 -115.534 -56.570 -37.032 1.00 8.18 N
ATOM 21 C2 A B2469 -114.701 -55.531 -37.172 1.00 8.18 C
ATOM 22 N3 A B2469 -114.859 -54.393 -37.848 1.00 8.18 N
ATOM 23 C4 A B2469 -116.051 -54.331 -38.465 1.00 8.18 C
ATOM 24 P U B2470 -113.783 -53.191 -43.772 1.00 6.46 P
ATOM 25 OP1 U B2470 -112.981 -52.566 -44.848 1.00 6.46 O
ATOM 26 OP2 U B2470 -114.873 -54.122 -44.145 1.00 6.46 O
ATOM 27 O5' U B2470 -112.816 -53.857 -42.715 1.00 6.46 O
TER
Atoms:
OP1: (-122.330,-53.190,-35.952)
OP2: (-120.101,-53.088,-37.236)
C3': (-121.107,-48.146,-34.797)
C1': (-120.167,-48.841,-32.781)
C5': (-122.039,-50.424,-35.435)
O4': (-120.889,-49.923,-33.361)
C8: (-118.140,-49.934,-33.849)
O2': (-121.646,-46.960,-32.718)
C6: (-115.462,-47.970,-32.620)
C5: (-116.619,-48.645,-33.024)
C4: (-117.817,-48.201,-32.527)
P: (-120.918,-52.701,-36.048)
C4': (-121.789,-49.407,-34.364)
C2': (-120.613,-47.568,-33.478)
C2: (-116.865,-46.610,-31.415)
N1: (-115.621,-46.924,-31.796)
N3: (-118.031,-47.175,-31.713)
N6: (-114.237,-48.293,-33.011)
N7: (-116.840,-49.738,-33.853)
N9: (-118.755,-49.049,-33.021)
O5': (-120.862,-51.115,-35.812)
O3': (-121.916,-47.301,-35.569)
OP2: (-120.101,-53.088,-37.236)
C3': (-121.107,-48.146,-34.797)
C1': (-120.167,-48.841,-32.781)
C5': (-122.039,-50.424,-35.435)
O4': (-120.889,-49.923,-33.361)
C8: (-118.140,-49.934,-33.849)
O2': (-121.646,-46.960,-32.718)
C6: (-115.462,-47.970,-32.620)
C5: (-116.619,-48.645,-33.024)
C4: (-117.817,-48.201,-32.527)
P: (-120.918,-52.701,-36.048)
C4': (-121.789,-49.407,-34.364)
C2': (-120.613,-47.568,-33.478)
C2: (-116.865,-46.610,-31.415)
N1: (-115.621,-46.924,-31.796)
N3: (-118.031,-47.175,-31.713)
N6: (-114.237,-48.293,-33.011)
N7: (-116.840,-49.738,-33.853)
N9: (-118.755,-49.049,-33.021)
O5': (-120.862,-51.115,-35.812)
O3': (-121.916,-47.301,-35.569)
OP1: (-120.653,-52.347,-44.082)
OP2: (-120.458,-49.812,-44.235)
C3': (-115.358,-52.355,-41.902)
C1': (-116.098,-52.001,-39.713)
C5': (-117.707,-52.028,-42.835)
O4': (-117.065,-51.465,-40.566)
C8: (-117.814,-53.791,-39.640)
O2': (-114.160,-50.839,-40.472)
C6: (-116.722,-56.500,-37.659)
C5: (-117.004,-55.336,-38.413)
C4: (-116.051,-54.331,-38.465)
P: (-119.810,-51.138,-44.117)
C4': (-116.606,-51.509,-41.943)
C2': (-114.815,-52.093,-40.518)
C2: (-114.701,-55.531,-37.172)
N1: (-115.534,-56.570,-37.032)
N3: (-114.859,-54.393,-37.848)
N6: (-117.558,-57.537,-37.525)
N7: (-118.115,-54.970,-39.155)
N9: (-116.585,-53.324,-39.273)
O5': (-118.807,-51.129,-42.885)
O3': (-114.458,-52.029,-42.927)
OP2: (-120.458,-49.812,-44.235)
C3': (-115.358,-52.355,-41.902)
C1': (-116.098,-52.001,-39.713)
C5': (-117.707,-52.028,-42.835)
O4': (-117.065,-51.465,-40.566)
C8: (-117.814,-53.791,-39.640)
O2': (-114.160,-50.839,-40.472)
C6: (-116.722,-56.500,-37.659)
C5: (-117.004,-55.336,-38.413)
C4: (-116.051,-54.331,-38.465)
P: (-119.810,-51.138,-44.117)
C4': (-116.606,-51.509,-41.943)
C2': (-114.815,-52.093,-40.518)
C2: (-114.701,-55.531,-37.172)
N1: (-115.534,-56.570,-37.032)
N3: (-114.859,-54.393,-37.848)
N6: (-117.558,-57.537,-37.525)
N7: (-118.115,-54.970,-39.155)
N9: (-116.585,-53.324,-39.273)
O5': (-118.807,-51.129,-42.885)
O3': (-114.458,-52.029,-42.927)
Image (generated by PyMOL):