Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12590:12597
Extra
PDB:
ATOM 1 O3' A A2589 2.960 -5.728 11.272 1.00 57.97 O
ATOM 2 P A A2590 1.966 -6.050 10.054 1.00 58.65 P
ATOM 3 OP1 A A2590 2.594 -7.177 9.276 1.00 58.80 O
ATOM 4 OP2 A A2590 1.678 -4.754 9.344 1.00 59.01 O
ATOM 5 O5' A A2590 0.652 -6.535 10.835 1.00 58.65 O
ATOM 6 C5' A A2590 0.398 -7.905 11.005 1.00 58.64 C
ATOM 7 C4' A A2590 -0.392 -8.194 12.250 1.00 58.36 C
ATOM 8 O4' A A2590 0.419 -8.020 13.432 1.00 57.74 O
ATOM 9 C3' A A2590 -1.584 -7.319 12.539 1.00 58.54 C
ATOM 10 O3' A A2590 -2.674 -7.556 11.658 1.00 59.14 O
ATOM 11 C2' A A2590 -1.865 -7.707 13.986 1.00 58.09 C
ATOM 12 O2' A A2590 -2.468 -8.985 14.029 1.00 58.22 O
ATOM 13 C1' A A2590 -0.436 -7.837 14.540 1.00 57.55 C
ATOM 14 N9 A A2590 -0.026 -6.632 15.278 1.00 57.20 N
ATOM 15 C8 A A2590 0.778 -5.575 14.930 1.00 57.15 C
ATOM 16 N7 A A2590 0.843 -4.650 15.850 1.00 56.84 N
ATOM 17 C5 A A2590 0.037 -5.147 16.857 1.00 56.67 C
ATOM 18 C6 A A2590 -0.313 -4.630 18.113 1.00 56.34 C
ATOM 19 N6 A A2590 0.163 -3.444 18.566 1.00 56.12 N
ATOM 20 N1 A A2590 -1.155 -5.379 18.877 1.00 56.27 N
ATOM 21 C2 A A2590 -1.595 -6.539 18.367 1.00 56.52 C
ATOM 22 N3 A A2590 -1.355 -7.133 17.205 1.00 56.85 N
ATOM 23 C4 A A2590 -0.512 -6.362 16.513 1.00 56.89 C
ATOM 24 P G A2591 -3.935 -6.537 11.617 1.00 57.72 P
ATOM 25 OP1 G A2591 -4.947 -7.135 10.678 1.00 58.33 O
ATOM 26 OP2 G A2591 -3.404 -5.157 11.325 1.00 57.72 O
ATOM 27 O5' G A2591 -4.472 -6.602 13.106 1.00 57.31 O
TER
ATOM 1 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 2 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 3 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 4 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 5 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
ATOM 6 C5' A B2597 -1.557 0.997 8.011 1.00 65.80 C
ATOM 7 C4' A B2597 -1.480 0.910 9.506 1.00 65.19 C
ATOM 8 O4' A B2597 -0.918 -0.379 9.896 1.00 64.84 O
ATOM 9 C3' A B2597 -0.588 1.940 10.164 1.00 64.79 C
ATOM 10 O3' A B2597 -1.262 3.138 10.421 1.00 64.93 O
ATOM 11 C2' A B2597 -0.126 1.233 11.421 1.00 64.16 C
ATOM 12 O2' A B2597 -1.150 1.254 12.394 1.00 64.05 O
ATOM 13 C1' A B2597 0.043 -0.201 10.911 1.00 64.23 C
ATOM 14 N9 A B2597 1.385 -0.411 10.305 1.00 64.13 N
ATOM 15 C8 A B2597 1.634 -0.779 9.006 1.00 64.55 C
ATOM 16 N7 A B2597 2.898 -0.866 8.681 1.00 64.38 N
ATOM 17 C5 A B2597 3.541 -0.500 9.847 1.00 63.81 C
ATOM 18 C6 A B2597 4.907 -0.392 10.159 1.00 63.40 C
ATOM 19 N6 A B2597 5.889 -0.646 9.278 1.00 63.51 N
ATOM 20 N1 A B2597 5.230 -0.020 11.419 1.00 62.88 N
ATOM 21 C2 A B2597 4.258 0.228 12.303 1.00 62.78 C
ATOM 22 N3 A B2597 2.944 0.161 12.113 1.00 63.14 N
ATOM 23 C4 A B2597 2.636 -0.210 10.853 1.00 63.65 C
ATOM 24 P U B2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 25 OP1 U B2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 26 OP2 U B2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 27 O5' U B2598 0.458 4.956 10.647 1.00 62.21 O
TER
ATOM 2 P A A2590 1.966 -6.050 10.054 1.00 58.65 P
ATOM 3 OP1 A A2590 2.594 -7.177 9.276 1.00 58.80 O
ATOM 4 OP2 A A2590 1.678 -4.754 9.344 1.00 59.01 O
ATOM 5 O5' A A2590 0.652 -6.535 10.835 1.00 58.65 O
ATOM 6 C5' A A2590 0.398 -7.905 11.005 1.00 58.64 C
ATOM 7 C4' A A2590 -0.392 -8.194 12.250 1.00 58.36 C
ATOM 8 O4' A A2590 0.419 -8.020 13.432 1.00 57.74 O
ATOM 9 C3' A A2590 -1.584 -7.319 12.539 1.00 58.54 C
ATOM 10 O3' A A2590 -2.674 -7.556 11.658 1.00 59.14 O
ATOM 11 C2' A A2590 -1.865 -7.707 13.986 1.00 58.09 C
ATOM 12 O2' A A2590 -2.468 -8.985 14.029 1.00 58.22 O
ATOM 13 C1' A A2590 -0.436 -7.837 14.540 1.00 57.55 C
ATOM 14 N9 A A2590 -0.026 -6.632 15.278 1.00 57.20 N
ATOM 15 C8 A A2590 0.778 -5.575 14.930 1.00 57.15 C
ATOM 16 N7 A A2590 0.843 -4.650 15.850 1.00 56.84 N
ATOM 17 C5 A A2590 0.037 -5.147 16.857 1.00 56.67 C
ATOM 18 C6 A A2590 -0.313 -4.630 18.113 1.00 56.34 C
ATOM 19 N6 A A2590 0.163 -3.444 18.566 1.00 56.12 N
ATOM 20 N1 A A2590 -1.155 -5.379 18.877 1.00 56.27 N
ATOM 21 C2 A A2590 -1.595 -6.539 18.367 1.00 56.52 C
ATOM 22 N3 A A2590 -1.355 -7.133 17.205 1.00 56.85 N
ATOM 23 C4 A A2590 -0.512 -6.362 16.513 1.00 56.89 C
ATOM 24 P G A2591 -3.935 -6.537 11.617 1.00 57.72 P
ATOM 25 OP1 G A2591 -4.947 -7.135 10.678 1.00 58.33 O
ATOM 26 OP2 G A2591 -3.404 -5.157 11.325 1.00 57.72 O
ATOM 27 O5' G A2591 -4.472 -6.602 13.106 1.00 57.31 O
TER
ATOM 1 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 2 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 3 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 4 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 5 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
ATOM 6 C5' A B2597 -1.557 0.997 8.011 1.00 65.80 C
ATOM 7 C4' A B2597 -1.480 0.910 9.506 1.00 65.19 C
ATOM 8 O4' A B2597 -0.918 -0.379 9.896 1.00 64.84 O
ATOM 9 C3' A B2597 -0.588 1.940 10.164 1.00 64.79 C
ATOM 10 O3' A B2597 -1.262 3.138 10.421 1.00 64.93 O
ATOM 11 C2' A B2597 -0.126 1.233 11.421 1.00 64.16 C
ATOM 12 O2' A B2597 -1.150 1.254 12.394 1.00 64.05 O
ATOM 13 C1' A B2597 0.043 -0.201 10.911 1.00 64.23 C
ATOM 14 N9 A B2597 1.385 -0.411 10.305 1.00 64.13 N
ATOM 15 C8 A B2597 1.634 -0.779 9.006 1.00 64.55 C
ATOM 16 N7 A B2597 2.898 -0.866 8.681 1.00 64.38 N
ATOM 17 C5 A B2597 3.541 -0.500 9.847 1.00 63.81 C
ATOM 18 C6 A B2597 4.907 -0.392 10.159 1.00 63.40 C
ATOM 19 N6 A B2597 5.889 -0.646 9.278 1.00 63.51 N
ATOM 20 N1 A B2597 5.230 -0.020 11.419 1.00 62.88 N
ATOM 21 C2 A B2597 4.258 0.228 12.303 1.00 62.78 C
ATOM 22 N3 A B2597 2.944 0.161 12.113 1.00 63.14 N
ATOM 23 C4 A B2597 2.636 -0.210 10.853 1.00 63.65 C
ATOM 24 P U B2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 25 OP1 U B2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 26 OP2 U B2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 27 O5' U B2598 0.458 4.956 10.647 1.00 62.21 O
TER
Atoms:
OP1: (2.594,-7.177,9.276)
OP2: (1.678,-4.754,9.344)
C3': (-1.584,-7.319,12.539)
C1': (-0.436,-7.837,14.540)
C5': (0.398,-7.905,11.005)
O4': (0.419,-8.020,13.432)
C8: (0.778,-5.575,14.930)
O2': (-2.468,-8.985,14.029)
C6: (-0.313,-4.630,18.113)
C5: (0.037,-5.147,16.857)
C4: (-0.512,-6.362,16.513)
P: (1.966,-6.050,10.054)
C4': (-0.392,-8.194,12.250)
C2': (-1.865,-7.707,13.986)
C2: (-1.595,-6.539,18.367)
N1: (-1.155,-5.379,18.877)
N3: (-1.355,-7.133,17.205)
N6: (0.163,-3.444,18.566)
N7: (0.843,-4.650,15.850)
N9: (-0.026,-6.632,15.278)
O5': (0.652,-6.535,10.835)
O3': (-2.674,-7.556,11.658)
OP2: (1.678,-4.754,9.344)
C3': (-1.584,-7.319,12.539)
C1': (-0.436,-7.837,14.540)
C5': (0.398,-7.905,11.005)
O4': (0.419,-8.020,13.432)
C8: (0.778,-5.575,14.930)
O2': (-2.468,-8.985,14.029)
C6: (-0.313,-4.630,18.113)
C5: (0.037,-5.147,16.857)
C4: (-0.512,-6.362,16.513)
P: (1.966,-6.050,10.054)
C4': (-0.392,-8.194,12.250)
C2': (-1.865,-7.707,13.986)
C2: (-1.595,-6.539,18.367)
N1: (-1.155,-5.379,18.877)
N3: (-1.355,-7.133,17.205)
N6: (0.163,-3.444,18.566)
N7: (0.843,-4.650,15.850)
N9: (-0.026,-6.632,15.278)
O5': (0.652,-6.535,10.835)
O3': (-2.674,-7.556,11.658)
OP1: (-2.982,-0.010,5.026)
OP2: (-4.785,-0.301,6.846)
C3': (-0.588,1.940,10.164)
C1': (0.043,-0.201,10.911)
C5': (-1.557,0.997,8.011)
O4': (-0.918,-0.379,9.896)
C8: (1.634,-0.779,9.006)
O2': (-1.150,1.254,12.394)
C6: (4.907,-0.392,10.159)
C5: (3.541,-0.500,9.847)
C4: (2.636,-0.210,10.853)
P: (-3.484,0.292,6.392)
C4': (-1.480,0.910,9.506)
C2': (-0.126,1.233,11.421)
C2: (4.258,0.228,12.303)
N1: (5.230,-0.020,11.419)
N3: (2.944,0.161,12.113)
N6: (5.889,-0.646,9.278)
N7: (2.898,-0.866,8.681)
N9: (1.385,-0.411,10.305)
O5': (-2.357,-0.032,7.472)
O3': (-1.262,3.138,10.421)
OP2: (-4.785,-0.301,6.846)
C3': (-0.588,1.940,10.164)
C1': (0.043,-0.201,10.911)
C5': (-1.557,0.997,8.011)
O4': (-0.918,-0.379,9.896)
C8: (1.634,-0.779,9.006)
O2': (-1.150,1.254,12.394)
C6: (4.907,-0.392,10.159)
C5: (3.541,-0.500,9.847)
C4: (2.636,-0.210,10.853)
P: (-3.484,0.292,6.392)
C4': (-1.480,0.910,9.506)
C2': (-0.126,1.233,11.421)
C2: (4.258,0.228,12.303)
N1: (5.230,-0.020,11.419)
N3: (2.944,0.161,12.113)
N6: (5.889,-0.646,9.278)
N7: (2.898,-0.866,8.681)
N9: (1.385,-0.411,10.305)
O5': (-2.357,-0.032,7.472)
O3': (-1.262,3.138,10.421)
Image (generated by PyMOL):