ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1Y39:D6:D36

Extra

PDB:
ATOM 1 O3' G A 5 128.947 75.884 -0.545 1.00 54.54 O
ATOM 2 P A A 6 129.621 74.434 -0.431 1.00 53.04 P
ATOM 3 OP1 A A 6 129.455 73.758 -1.739 1.00 54.07 O
ATOM 4 OP2 A A 6 129.104 73.777 0.799 1.00 52.53 O
ATOM 5 O5' A A 6 131.158 74.798 -0.248 1.00 52.81 O
ATOM 6 C5' A A 6 131.761 74.716 1.026 1.00 52.00 C
ATOM 7 C4' A A 6 132.459 76.006 1.378 1.00 52.52 C
ATOM 8 O4' A A 6 131.586 77.154 1.180 1.00 53.20 O
ATOM 9 C3' A A 6 132.776 76.013 2.856 1.00 52.30 C
ATOM 10 O3' A A 6 134.011 75.362 3.059 1.00 51.44 O
ATOM 11 C2' A A 6 132.778 77.489 3.208 1.00 51.69 C
ATOM 12 O2' A A 6 133.986 78.098 2.868 1.00 53.02 O
ATOM 13 C1' A A 6 131.658 78.015 2.312 1.00 52.38 C
ATOM 14 N9 A A 6 130.353 78.013 2.982 1.00 52.70 N
ATOM 15 C8 A A 6 129.167 77.481 2.531 1.00 53.29 C
ATOM 16 N7 A A 6 128.167 77.626 3.369 1.00 52.98 N
ATOM 17 C5 A A 6 128.729 78.305 4.438 1.00 52.85 C
ATOM 18 C6 A A 6 128.192 78.761 5.647 1.00 53.53 C
ATOM 19 N6 A A 6 126.914 78.598 5.992 1.00 53.64 N
ATOM 20 N1 A A 6 129.022 79.403 6.504 1.00 54.67 N
ATOM 21 C2 A A 6 130.303 79.569 6.152 1.00 53.60 C
ATOM 22 N3 A A 6 130.924 79.187 5.039 1.00 54.36 N
ATOM 23 C4 A A 6 130.073 78.552 4.214 1.00 53.00 C
ATOM 24 P U A 7 134.085 74.117 4.064 1.00 52.64 P
ATOM 25 OP1 U A 7 135.353 73.390 3.792 1.00 52.84 O
ATOM 26 OP2 U A 7 132.795 73.380 4.018 1.00 52.58 O
ATOM 27 O5' U A 7 134.185 74.812 5.489 1.00 50.56 O
TER

ATOM 1 O3' A B 35 123.147 78.543 3.124 1.00 53.58 O
ATOM 2 P G B 36 123.248 78.265 4.702 1.00 52.19 P
ATOM 3 OP1 G B 36 123.076 79.576 5.383 1.00 53.78 O
ATOM 4 OP2 G B 36 124.487 77.488 4.906 1.00 52.28 O
ATOM 5 O5' G B 36 122.005 77.319 5.024 1.00 51.04 O
ATOM 6 C5' G B 36 120.814 77.818 5.641 1.00 50.61 C
ATOM 7 C4' G B 36 119.787 76.711 5.752 1.00 51.94 C
ATOM 8 O4' G B 36 119.443 76.242 4.427 1.00 53.10 O
ATOM 9 C3' G B 36 120.265 75.503 6.540 1.00 52.53 C
ATOM 10 O3' G B 36 119.668 75.587 7.826 1.00 53.52 O
ATOM 11 C2' G B 36 119.678 74.316 5.783 1.00 52.52 C
ATOM 12 O2' G B 36 118.370 74.024 6.226 1.00 54.27 O
ATOM 13 C1' G B 36 119.612 74.845 4.347 1.00 53.00 C
ATOM 14 N9 G B 36 120.774 74.617 3.496 1.00 53.31 N
ATOM 15 C8 G B 36 122.099 74.610 3.869 1.00 54.77 C
ATOM 16 N7 G B 36 122.917 74.467 2.861 1.00 54.31 N
ATOM 17 C5 G B 36 122.081 74.348 1.757 1.00 53.95 C
ATOM 18 C6 G B 36 122.394 74.183 0.382 1.00 53.35 C
ATOM 19 O6 G B 36 123.505 74.113 -0.151 1.00 53.38 O
ATOM 20 N1 G B 36 121.245 74.107 -0.399 1.00 52.85 N
ATOM 21 C2 G B 36 119.962 74.191 0.075 1.00 52.98 C
ATOM 22 N2 G B 36 118.995 74.099 -0.844 1.00 51.49 N
ATOM 23 N3 G B 36 119.652 74.353 1.356 1.00 53.29 N
ATOM 24 C4 G B 36 120.756 74.421 2.136 1.00 53.65 C
ATOM 25 P A B 37 120.529 76.067 9.090 1.00 53.98 P
ATOM 26 OP1 A B 37 119.597 76.403 10.193 1.00 57.11 O
ATOM 27 OP2 A B 37 121.484 77.088 8.612 1.00 55.57 O
ATOM 28 O5' A B 37 121.303 74.751 9.531 1.00 53.99 O
TER

Atoms:
OP1: (129.455,73.758,-1.739)
OP2: (129.104,73.777,0.799)
C3': (132.776,76.013,2.856)
C1': (131.658,78.015,2.312)
C5': (131.761,74.716,1.026)
O4': (131.586,77.154,1.180)
C8: (129.167,77.481,2.531)
O2': (133.986,78.098,2.868)
C6: (128.192,78.761,5.647)
C5: (128.729,78.305,4.438)
C4: (130.073,78.552,4.214)
P: (129.621,74.434,-0.431)
C4': (132.459,76.006,1.378)
C2': (132.778,77.489,3.208)
C2: (130.303,79.569,6.152)
N1: (129.022,79.403,6.504)
N3: (130.924,79.187,5.039)
N6: (126.914,78.598,5.992)
N7: (128.167,77.626,3.369)
N9: (130.353,78.013,2.982)
O5': (131.158,74.798,-0.248)
O3': (134.011,75.362,3.059)
OP1: (123.076,79.576,5.383)
OP2: (124.487,77.488,4.906)
C3': (120.265,75.503,6.540)
C1': (119.612,74.845,4.347)
C5': (120.814,77.818,5.641)
O6: (123.505,74.113,-0.151)
O4': (119.443,76.242,4.427)
C8: (122.099,74.610,3.869)
C2: (119.962,74.191,0.075)
C6: (122.394,74.183,0.382)
C5: (122.081,74.348,1.757)
C4: (120.756,74.421,2.136)
P: (123.248,78.265,4.702)
C4': (119.787,76.711,5.752)
C2': (119.678,74.316,5.783)
O2': (118.370,74.024,6.226)
N1: (121.245,74.107,-0.399)
N2: (118.995,74.099,-0.844)
N3: (119.652,74.353,1.356)
N7: (122.917,74.467,2.861)
N9: (120.774,74.617,3.496)
O5': (122.005,77.319,5.024)
O3': (119.668,75.587,7.826)
Image (generated by PyMOL):
PyMOL image
show in jmol