Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3F1F:A2598:A2562
Extra
PDB:
ATOM 1 O3' U A2597 -10.661 113.374 183.548 1.00 42.77 O
ATOM 2 P A A2598 -11.541 112.136 184.051 1.00 34.60 P
ATOM 3 OP1 A A2598 -11.017 111.657 185.365 1.00 26.99 O
ATOM 4 OP2 A A2598 -11.678 111.217 182.890 1.00 43.52 O
ATOM 5 O5' A A2598 -12.973 112.805 184.272 1.00 31.09 O
ATOM 6 C5' A A2598 -13.024 113.990 185.008 1.00 32.82 C
ATOM 7 C4' A A2598 -14.222 113.935 185.918 1.00 32.02 C
ATOM 8 O4' A A2598 -15.378 113.768 185.072 1.00 29.60 O
ATOM 9 C3' A A2598 -14.194 112.759 186.884 1.00 31.95 C
ATOM 10 O3' A A2598 -14.687 113.125 188.167 1.00 27.50 O
ATOM 11 C2' A A2598 -15.115 111.757 186.205 1.00 36.30 C
ATOM 12 O2' A A2598 -15.809 110.978 187.144 1.00 49.80 O
ATOM 13 C1' A A2598 -16.115 112.656 185.510 1.00 35.28 C
ATOM 14 N9 A A2598 -16.686 112.033 184.325 1.00 45.67 N
ATOM 15 C8 A A2598 -16.014 111.409 183.305 1.00 52.76 C
ATOM 16 N7 A A2598 -16.807 110.945 182.360 1.00 57.17 N
ATOM 17 C5 A A2598 -18.080 111.291 182.789 1.00 51.84 C
ATOM 18 C6 A A2598 -19.358 111.086 182.241 1.00 53.64 C
ATOM 19 N6 A A2598 -19.562 110.457 181.088 1.00 63.06 N
ATOM 20 N1 A A2598 -20.420 111.549 182.918 1.00 46.65 N
ATOM 21 C2 A A2598 -20.203 112.180 184.073 1.00 49.76 C
ATOM 22 N3 A A2598 -19.056 112.433 184.699 1.00 46.36 N
ATOM 23 C4 A A2598 -18.021 111.959 183.996 1.00 48.82 C
ATOM 24 P U A2599 -13.716 113.315 189.429 1.00 47.63 P
ATOM 25 OP1 U A2599 -12.333 113.644 189.012 1.00 42.69 O
ATOM 26 OP2 U A2599 -13.940 112.196 190.354 1.00 50.74 O
ATOM 27 O5' U A2599 -14.402 114.592 190.077 1.00 34.76 O
TER
ATOM 1 O3' A B2561 -18.207 110.724 176.793 1.00 40.18 O
ATOM 2 P G B2562 -18.100 109.206 177.266 1.00 32.89 P
ATOM 3 OP1 G B2562 -17.762 109.200 178.719 1.00 42.87 O
ATOM 4 OP2 G B2562 -17.208 108.530 176.291 1.00 37.50 O
ATOM 5 O5' G B2562 -19.606 108.707 177.032 1.00 38.94 O
ATOM 6 C5' G B2562 -20.119 108.650 175.720 1.00 37.00 C
ATOM 7 C4' G B2562 -19.440 107.536 174.964 1.00 32.57 C
ATOM 8 O4' G B2562 -20.089 106.280 175.266 1.00 34.37 O
ATOM 9 C3' G B2562 -19.546 107.653 173.462 1.00 36.52 C
ATOM 10 O3' G B2562 -18.493 108.479 173.000 1.00 46.50 O
ATOM 11 C2' G B2562 -19.374 106.207 173.007 1.00 35.43 C
ATOM 12 O2' G B2562 -18.013 105.840 172.914 1.00 47.78 O
ATOM 13 C1' G B2562 -20.085 105.440 174.119 1.00 40.02 C
ATOM 14 N9 G B2562 -21.462 105.175 173.727 1.00 42.28 N
ATOM 15 C8 G B2562 -22.608 105.640 174.321 1.00 36.44 C
ATOM 16 N7 G B2562 -23.687 105.236 173.716 1.00 38.93 N
ATOM 17 C5 G B2562 -23.229 104.462 172.658 1.00 39.17 C
ATOM 18 C6 G B2562 -23.936 103.763 171.652 1.00 44.49 C
ATOM 19 O6 G B2562 -25.157 103.686 171.486 1.00 49.47 O
ATOM 20 N1 G B2562 -23.091 103.098 170.775 1.00 43.34 N
ATOM 21 C2 G B2562 -21.723 103.124 170.871 1.00 45.42 C
ATOM 22 N2 G B2562 -21.056 102.435 169.937 1.00 52.27 N
ATOM 23 N3 G B2562 -21.045 103.776 171.806 1.00 45.49 N
ATOM 24 C4 G B2562 -21.863 104.419 172.659 1.00 42.29 C
ATOM 25 P C B2563 -18.687 109.209 171.583 1.00 35.16 P
ATOM 26 OP1 C B2563 -17.694 110.302 171.467 1.00 42.45 O
ATOM 27 OP2 C B2563 -20.124 109.513 171.427 1.00 50.26 O
ATOM 28 O5' C B2563 -18.361 108.056 170.531 1.00 35.18 O
TER
ATOM 2 P A A2598 -11.541 112.136 184.051 1.00 34.60 P
ATOM 3 OP1 A A2598 -11.017 111.657 185.365 1.00 26.99 O
ATOM 4 OP2 A A2598 -11.678 111.217 182.890 1.00 43.52 O
ATOM 5 O5' A A2598 -12.973 112.805 184.272 1.00 31.09 O
ATOM 6 C5' A A2598 -13.024 113.990 185.008 1.00 32.82 C
ATOM 7 C4' A A2598 -14.222 113.935 185.918 1.00 32.02 C
ATOM 8 O4' A A2598 -15.378 113.768 185.072 1.00 29.60 O
ATOM 9 C3' A A2598 -14.194 112.759 186.884 1.00 31.95 C
ATOM 10 O3' A A2598 -14.687 113.125 188.167 1.00 27.50 O
ATOM 11 C2' A A2598 -15.115 111.757 186.205 1.00 36.30 C
ATOM 12 O2' A A2598 -15.809 110.978 187.144 1.00 49.80 O
ATOM 13 C1' A A2598 -16.115 112.656 185.510 1.00 35.28 C
ATOM 14 N9 A A2598 -16.686 112.033 184.325 1.00 45.67 N
ATOM 15 C8 A A2598 -16.014 111.409 183.305 1.00 52.76 C
ATOM 16 N7 A A2598 -16.807 110.945 182.360 1.00 57.17 N
ATOM 17 C5 A A2598 -18.080 111.291 182.789 1.00 51.84 C
ATOM 18 C6 A A2598 -19.358 111.086 182.241 1.00 53.64 C
ATOM 19 N6 A A2598 -19.562 110.457 181.088 1.00 63.06 N
ATOM 20 N1 A A2598 -20.420 111.549 182.918 1.00 46.65 N
ATOM 21 C2 A A2598 -20.203 112.180 184.073 1.00 49.76 C
ATOM 22 N3 A A2598 -19.056 112.433 184.699 1.00 46.36 N
ATOM 23 C4 A A2598 -18.021 111.959 183.996 1.00 48.82 C
ATOM 24 P U A2599 -13.716 113.315 189.429 1.00 47.63 P
ATOM 25 OP1 U A2599 -12.333 113.644 189.012 1.00 42.69 O
ATOM 26 OP2 U A2599 -13.940 112.196 190.354 1.00 50.74 O
ATOM 27 O5' U A2599 -14.402 114.592 190.077 1.00 34.76 O
TER
ATOM 1 O3' A B2561 -18.207 110.724 176.793 1.00 40.18 O
ATOM 2 P G B2562 -18.100 109.206 177.266 1.00 32.89 P
ATOM 3 OP1 G B2562 -17.762 109.200 178.719 1.00 42.87 O
ATOM 4 OP2 G B2562 -17.208 108.530 176.291 1.00 37.50 O
ATOM 5 O5' G B2562 -19.606 108.707 177.032 1.00 38.94 O
ATOM 6 C5' G B2562 -20.119 108.650 175.720 1.00 37.00 C
ATOM 7 C4' G B2562 -19.440 107.536 174.964 1.00 32.57 C
ATOM 8 O4' G B2562 -20.089 106.280 175.266 1.00 34.37 O
ATOM 9 C3' G B2562 -19.546 107.653 173.462 1.00 36.52 C
ATOM 10 O3' G B2562 -18.493 108.479 173.000 1.00 46.50 O
ATOM 11 C2' G B2562 -19.374 106.207 173.007 1.00 35.43 C
ATOM 12 O2' G B2562 -18.013 105.840 172.914 1.00 47.78 O
ATOM 13 C1' G B2562 -20.085 105.440 174.119 1.00 40.02 C
ATOM 14 N9 G B2562 -21.462 105.175 173.727 1.00 42.28 N
ATOM 15 C8 G B2562 -22.608 105.640 174.321 1.00 36.44 C
ATOM 16 N7 G B2562 -23.687 105.236 173.716 1.00 38.93 N
ATOM 17 C5 G B2562 -23.229 104.462 172.658 1.00 39.17 C
ATOM 18 C6 G B2562 -23.936 103.763 171.652 1.00 44.49 C
ATOM 19 O6 G B2562 -25.157 103.686 171.486 1.00 49.47 O
ATOM 20 N1 G B2562 -23.091 103.098 170.775 1.00 43.34 N
ATOM 21 C2 G B2562 -21.723 103.124 170.871 1.00 45.42 C
ATOM 22 N2 G B2562 -21.056 102.435 169.937 1.00 52.27 N
ATOM 23 N3 G B2562 -21.045 103.776 171.806 1.00 45.49 N
ATOM 24 C4 G B2562 -21.863 104.419 172.659 1.00 42.29 C
ATOM 25 P C B2563 -18.687 109.209 171.583 1.00 35.16 P
ATOM 26 OP1 C B2563 -17.694 110.302 171.467 1.00 42.45 O
ATOM 27 OP2 C B2563 -20.124 109.513 171.427 1.00 50.26 O
ATOM 28 O5' C B2563 -18.361 108.056 170.531 1.00 35.18 O
TER
Atoms:
OP1: (-11.017,111.657,185.365)
OP2: (-11.678,111.217,182.890)
C3': (-14.194,112.759,186.884)
C1': (-16.115,112.656,185.510)
C5': (-13.024,113.990,185.008)
O4': (-15.378,113.768,185.072)
C8: (-16.014,111.409,183.305)
O2': (-15.809,110.978,187.144)
C6: (-19.358,111.086,182.241)
C5: (-18.080,111.291,182.789)
C4: (-18.021,111.959,183.996)
P: (-11.541,112.136,184.051)
C4': (-14.222,113.935,185.918)
C2': (-15.115,111.757,186.205)
C2: (-20.203,112.180,184.073)
N1: (-20.420,111.549,182.918)
N3: (-19.056,112.433,184.699)
N6: (-19.562,110.457,181.088)
N7: (-16.807,110.945,182.360)
N9: (-16.686,112.033,184.325)
O5': (-12.973,112.805,184.272)
O3': (-14.687,113.125,188.167)
OP2: (-11.678,111.217,182.890)
C3': (-14.194,112.759,186.884)
C1': (-16.115,112.656,185.510)
C5': (-13.024,113.990,185.008)
O4': (-15.378,113.768,185.072)
C8: (-16.014,111.409,183.305)
O2': (-15.809,110.978,187.144)
C6: (-19.358,111.086,182.241)
C5: (-18.080,111.291,182.789)
C4: (-18.021,111.959,183.996)
P: (-11.541,112.136,184.051)
C4': (-14.222,113.935,185.918)
C2': (-15.115,111.757,186.205)
C2: (-20.203,112.180,184.073)
N1: (-20.420,111.549,182.918)
N3: (-19.056,112.433,184.699)
N6: (-19.562,110.457,181.088)
N7: (-16.807,110.945,182.360)
N9: (-16.686,112.033,184.325)
O5': (-12.973,112.805,184.272)
O3': (-14.687,113.125,188.167)
OP1: (-17.762,109.200,178.719)
OP2: (-17.208,108.530,176.291)
C3': (-19.546,107.653,173.462)
C1': (-20.085,105.440,174.119)
C5': (-20.119,108.650,175.720)
O6: (-25.157,103.686,171.486)
O4': (-20.089,106.280,175.266)
C8: (-22.608,105.640,174.321)
C2: (-21.723,103.124,170.871)
C6: (-23.936,103.763,171.652)
C5: (-23.229,104.462,172.658)
C4: (-21.863,104.419,172.659)
P: (-18.100,109.206,177.266)
C4': (-19.440,107.536,174.964)
C2': (-19.374,106.207,173.007)
O2': (-18.013,105.840,172.914)
N1: (-23.091,103.098,170.775)
N2: (-21.056,102.435,169.937)
N3: (-21.045,103.776,171.806)
N7: (-23.687,105.236,173.716)
N9: (-21.462,105.175,173.727)
O5': (-19.606,108.707,177.032)
O3': (-18.493,108.479,173.000)
OP2: (-17.208,108.530,176.291)
C3': (-19.546,107.653,173.462)
C1': (-20.085,105.440,174.119)
C5': (-20.119,108.650,175.720)
O6: (-25.157,103.686,171.486)
O4': (-20.089,106.280,175.266)
C8: (-22.608,105.640,174.321)
C2: (-21.723,103.124,170.871)
C6: (-23.936,103.763,171.652)
C5: (-23.229,104.462,172.658)
C4: (-21.863,104.419,172.659)
P: (-18.100,109.206,177.266)
C4': (-19.440,107.536,174.964)
C2': (-19.374,106.207,173.007)
O2': (-18.013,105.840,172.914)
N1: (-23.091,103.098,170.775)
N2: (-21.056,102.435,169.937)
N3: (-21.045,103.776,171.806)
N7: (-23.687,105.236,173.716)
N9: (-21.462,105.175,173.727)
O5': (-19.606,108.707,177.032)
O3': (-18.493,108.479,173.000)
Image (generated by PyMOL):