Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A12:A11
Extra
PDB:
ATOM 1 O3' G A 11 12.648 -15.473 10.654 1.00 23.49 O
ATOM 2 P C A 12 12.431 -15.528 9.073 1.00 25.28 P
ATOM 3 OP1 C A 12 11.539 -16.663 8.735 1.00 25.30 O
ATOM 4 OP2 C A 12 13.798 -15.468 8.502 1.00 27.01 O
ATOM 5 O5' C A 12 11.666 -14.176 8.743 1.00 23.49 O
ATOM 6 C5' C A 12 10.281 -14.179 8.461 1.00 19.47 C
ATOM 7 C4' C A 12 9.712 -12.802 8.668 1.00 18.90 C
ATOM 8 O4' C A 12 9.859 -12.429 10.057 1.00 16.10 O
ATOM 9 C3' C A 12 10.420 -11.678 7.932 1.00 20.58 C
ATOM 10 O3' C A 12 10.047 -11.614 6.568 1.00 22.97 O
ATOM 11 C2' C A 12 9.968 -10.459 8.716 1.00 19.41 C
ATOM 12 O2' C A 12 8.669 -10.039 8.356 1.00 22.76 O
ATOM 13 C1' C A 12 9.952 -11.017 10.143 1.00 16.70 C
ATOM 14 N1 C A 12 11.168 -10.667 10.870 1.00 14.86 N
ATOM 15 C2 C A 12 11.194 -9.456 11.562 1.00 16.08 C
ATOM 16 O2 C A 12 10.176 -8.747 11.555 1.00 15.58 O
ATOM 17 N3 C A 12 12.322 -9.087 12.218 1.00 14.81 N
ATOM 18 C4 C A 12 13.386 -9.887 12.206 1.00 11.61 C
ATOM 19 N4 C A 12 14.460 -9.492 12.872 1.00 7.60 N
ATOM 20 C5 C A 12 13.385 -11.134 11.510 1.00 13.58 C
ATOM 21 C6 C A 12 12.262 -11.485 10.864 1.00 14.50 C
ATOM 22 P A A 13 11.009 -12.275 5.468 1.00 26.49 P
ATOM 23 OP1 A A 13 10.618 -11.752 4.135 1.00 27.95 O
ATOM 24 OP2 A A 13 11.029 -13.742 5.696 1.00 27.09 O
ATOM 25 O5' A A 13 12.451 -11.715 5.855 1.00 25.22 O
TER
ATOM 1 O3' C B 10 16.134 -14.808 12.824 1.00 28.96 O
ATOM 2 P G B 11 15.824 -16.368 12.569 1.00 22.45 P
ATOM 3 OP1 G B 11 16.667 -17.077 13.558 1.00 22.55 O
ATOM 4 OP2 G B 11 15.940 -16.715 11.129 1.00 21.20 O
ATOM 5 O5' G B 11 14.295 -16.472 13.007 1.00 21.36 O
ATOM 6 C5' G B 11 13.442 -17.510 12.519 1.00 21.70 C
ATOM 7 C4' G B 11 11.997 -17.049 12.528 1.00 20.29 C
ATOM 8 O4' G B 11 11.751 -16.433 13.816 1.00 19.12 O
ATOM 9 C3' G B 11 11.654 -15.976 11.505 1.00 20.32 C
ATOM 10 O3' G B 11 12.648 -15.473 10.654 1.00 23.49 O
ATOM 11 C2' G B 11 10.604 -15.121 12.189 1.00 20.06 C
ATOM 12 O2' G B 11 9.309 -15.636 12.016 1.00 26.33 O
ATOM 13 C1' G B 11 10.995 -15.255 13.656 1.00 18.77 C
ATOM 14 N9 G B 11 11.756 -14.146 14.207 1.00 16.52 N
ATOM 15 C8 G B 11 13.053 -14.165 14.650 1.00 17.24 C
ATOM 16 N7 G B 11 13.445 -13.014 15.129 1.00 17.66 N
ATOM 17 C5 G B 11 12.339 -12.192 14.983 1.00 16.47 C
ATOM 18 C6 G B 11 12.156 -10.833 15.326 1.00 17.21 C
ATOM 19 O6 G B 11 12.956 -10.057 15.861 1.00 18.89 O
ATOM 20 N1 G B 11 10.885 -10.394 14.993 1.00 18.70 N
ATOM 21 C2 G B 11 9.911 -11.166 14.410 1.00 20.23 C
ATOM 22 N2 G B 11 8.742 -10.561 14.166 1.00 25.19 N
ATOM 23 N3 G B 11 10.069 -12.434 14.091 1.00 17.67 N
ATOM 24 C4 G B 11 11.294 -12.877 14.404 1.00 16.37 C
ATOM 25 P C B 12 12.431 -15.528 9.073 1.00 25.28 P
ATOM 26 OP1 C B 12 11.539 -16.663 8.735 1.00 25.30 O
ATOM 27 OP2 C B 12 13.798 -15.468 8.502 1.00 27.01 O
ATOM 28 O5' C B 12 11.666 -14.176 8.743 1.00 23.49 O
TER
ATOM 2 P C A 12 12.431 -15.528 9.073 1.00 25.28 P
ATOM 3 OP1 C A 12 11.539 -16.663 8.735 1.00 25.30 O
ATOM 4 OP2 C A 12 13.798 -15.468 8.502 1.00 27.01 O
ATOM 5 O5' C A 12 11.666 -14.176 8.743 1.00 23.49 O
ATOM 6 C5' C A 12 10.281 -14.179 8.461 1.00 19.47 C
ATOM 7 C4' C A 12 9.712 -12.802 8.668 1.00 18.90 C
ATOM 8 O4' C A 12 9.859 -12.429 10.057 1.00 16.10 O
ATOM 9 C3' C A 12 10.420 -11.678 7.932 1.00 20.58 C
ATOM 10 O3' C A 12 10.047 -11.614 6.568 1.00 22.97 O
ATOM 11 C2' C A 12 9.968 -10.459 8.716 1.00 19.41 C
ATOM 12 O2' C A 12 8.669 -10.039 8.356 1.00 22.76 O
ATOM 13 C1' C A 12 9.952 -11.017 10.143 1.00 16.70 C
ATOM 14 N1 C A 12 11.168 -10.667 10.870 1.00 14.86 N
ATOM 15 C2 C A 12 11.194 -9.456 11.562 1.00 16.08 C
ATOM 16 O2 C A 12 10.176 -8.747 11.555 1.00 15.58 O
ATOM 17 N3 C A 12 12.322 -9.087 12.218 1.00 14.81 N
ATOM 18 C4 C A 12 13.386 -9.887 12.206 1.00 11.61 C
ATOM 19 N4 C A 12 14.460 -9.492 12.872 1.00 7.60 N
ATOM 20 C5 C A 12 13.385 -11.134 11.510 1.00 13.58 C
ATOM 21 C6 C A 12 12.262 -11.485 10.864 1.00 14.50 C
ATOM 22 P A A 13 11.009 -12.275 5.468 1.00 26.49 P
ATOM 23 OP1 A A 13 10.618 -11.752 4.135 1.00 27.95 O
ATOM 24 OP2 A A 13 11.029 -13.742 5.696 1.00 27.09 O
ATOM 25 O5' A A 13 12.451 -11.715 5.855 1.00 25.22 O
TER
ATOM 1 O3' C B 10 16.134 -14.808 12.824 1.00 28.96 O
ATOM 2 P G B 11 15.824 -16.368 12.569 1.00 22.45 P
ATOM 3 OP1 G B 11 16.667 -17.077 13.558 1.00 22.55 O
ATOM 4 OP2 G B 11 15.940 -16.715 11.129 1.00 21.20 O
ATOM 5 O5' G B 11 14.295 -16.472 13.007 1.00 21.36 O
ATOM 6 C5' G B 11 13.442 -17.510 12.519 1.00 21.70 C
ATOM 7 C4' G B 11 11.997 -17.049 12.528 1.00 20.29 C
ATOM 8 O4' G B 11 11.751 -16.433 13.816 1.00 19.12 O
ATOM 9 C3' G B 11 11.654 -15.976 11.505 1.00 20.32 C
ATOM 10 O3' G B 11 12.648 -15.473 10.654 1.00 23.49 O
ATOM 11 C2' G B 11 10.604 -15.121 12.189 1.00 20.06 C
ATOM 12 O2' G B 11 9.309 -15.636 12.016 1.00 26.33 O
ATOM 13 C1' G B 11 10.995 -15.255 13.656 1.00 18.77 C
ATOM 14 N9 G B 11 11.756 -14.146 14.207 1.00 16.52 N
ATOM 15 C8 G B 11 13.053 -14.165 14.650 1.00 17.24 C
ATOM 16 N7 G B 11 13.445 -13.014 15.129 1.00 17.66 N
ATOM 17 C5 G B 11 12.339 -12.192 14.983 1.00 16.47 C
ATOM 18 C6 G B 11 12.156 -10.833 15.326 1.00 17.21 C
ATOM 19 O6 G B 11 12.956 -10.057 15.861 1.00 18.89 O
ATOM 20 N1 G B 11 10.885 -10.394 14.993 1.00 18.70 N
ATOM 21 C2 G B 11 9.911 -11.166 14.410 1.00 20.23 C
ATOM 22 N2 G B 11 8.742 -10.561 14.166 1.00 25.19 N
ATOM 23 N3 G B 11 10.069 -12.434 14.091 1.00 17.67 N
ATOM 24 C4 G B 11 11.294 -12.877 14.404 1.00 16.37 C
ATOM 25 P C B 12 12.431 -15.528 9.073 1.00 25.28 P
ATOM 26 OP1 C B 12 11.539 -16.663 8.735 1.00 25.30 O
ATOM 27 OP2 C B 12 13.798 -15.468 8.502 1.00 27.01 O
ATOM 28 O5' C B 12 11.666 -14.176 8.743 1.00 23.49 O
TER
Atoms:
C2: (11.194,-9.456,11.562)
OP1: (11.539,-16.663,8.735)
OP2: (13.798,-15.468,8.502)
C4: (13.386,-9.887,12.206)
O5': (11.666,-14.176,8.743)
C3': (10.420,-11.678,7.932)
C1': (9.952,-11.017,10.143)
O4': (9.859,-12.429,10.057)
C5': (10.281,-14.179,8.461)
P: (12.431,-15.528,9.073)
O2: (10.176,-8.747,11.555)
C4': (9.712,-12.802,8.668)
C2': (9.968,-10.459,8.716)
O2': (8.669,-10.039,8.356)
N1: (11.168,-10.667,10.870)
N3: (12.322,-9.087,12.218)
N4: (14.460,-9.492,12.872)
C6: (12.262,-11.485,10.864)
C5: (13.385,-11.134,11.510)
O3': (10.047,-11.614,6.568)
OP1: (11.539,-16.663,8.735)
OP2: (13.798,-15.468,8.502)
C4: (13.386,-9.887,12.206)
O5': (11.666,-14.176,8.743)
C3': (10.420,-11.678,7.932)
C1': (9.952,-11.017,10.143)
O4': (9.859,-12.429,10.057)
C5': (10.281,-14.179,8.461)
P: (12.431,-15.528,9.073)
O2: (10.176,-8.747,11.555)
C4': (9.712,-12.802,8.668)
C2': (9.968,-10.459,8.716)
O2': (8.669,-10.039,8.356)
N1: (11.168,-10.667,10.870)
N3: (12.322,-9.087,12.218)
N4: (14.460,-9.492,12.872)
C6: (12.262,-11.485,10.864)
C5: (13.385,-11.134,11.510)
O3': (10.047,-11.614,6.568)
OP1: (16.667,-17.077,13.558)
OP2: (15.940,-16.715,11.129)
C3': (11.654,-15.976,11.505)
C1': (10.995,-15.255,13.656)
C5': (13.442,-17.510,12.519)
O6: (12.956,-10.057,15.861)
O4': (11.751,-16.433,13.816)
C8: (13.053,-14.165,14.650)
C2: (9.911,-11.166,14.410)
C6: (12.156,-10.833,15.326)
C5: (12.339,-12.192,14.983)
C4: (11.294,-12.877,14.404)
P: (15.824,-16.368,12.569)
C4': (11.997,-17.049,12.528)
C2': (10.604,-15.121,12.189)
O2': (9.309,-15.636,12.016)
N1: (10.885,-10.394,14.993)
N2: (8.742,-10.561,14.166)
N3: (10.069,-12.434,14.091)
N7: (13.445,-13.014,15.129)
N9: (11.756,-14.146,14.207)
O5': (14.295,-16.472,13.007)
O3': (12.648,-15.473,10.654)
OP2: (15.940,-16.715,11.129)
C3': (11.654,-15.976,11.505)
C1': (10.995,-15.255,13.656)
C5': (13.442,-17.510,12.519)
O6: (12.956,-10.057,15.861)
O4': (11.751,-16.433,13.816)
C8: (13.053,-14.165,14.650)
C2: (9.911,-11.166,14.410)
C6: (12.156,-10.833,15.326)
C5: (12.339,-12.192,14.983)
C4: (11.294,-12.877,14.404)
P: (15.824,-16.368,12.569)
C4': (11.997,-17.049,12.528)
C2': (10.604,-15.121,12.189)
O2': (9.309,-15.636,12.016)
N1: (10.885,-10.394,14.993)
N2: (8.742,-10.561,14.166)
N3: (10.069,-12.434,14.091)
N7: (13.445,-13.014,15.129)
N9: (11.756,-14.146,14.207)
O5': (14.295,-16.472,13.007)
O3': (12.648,-15.473,10.654)
Image (generated by PyMOL):