Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YLS:B13:B12
Extra
PDB:
ATOM 1 O3' G A 12 43.883 25.851 18.601 1.00 23.16 O
ATOM 2 P C A 13 43.844 24.469 17.836 1.00 22.42 P
ATOM 3 OP1 C A 13 45.028 24.441 16.943 1.00 21.84 O
ATOM 4 OP2 C A 13 42.472 24.298 17.296 1.00 22.32 O
ATOM 5 O5' C A 13 43.999 23.382 18.991 1.00 22.82 O
ATOM 6 C5' C A 13 45.146 23.344 19.855 1.00 23.42 C
ATOM 7 C4' C A 13 44.941 22.275 20.920 1.00 23.27 C
ATOM 8 O4' C A 13 44.197 22.883 21.990 1.00 22.87 O
ATOM 9 C3' C A 13 44.121 21.049 20.488 1.00 23.84 C
ATOM 10 O3' C A 13 44.953 19.953 20.052 1.00 24.17 O
ATOM 11 C2' C A 13 43.397 20.679 21.749 1.00 24.05 C
ATOM 12 O2' C A 13 44.161 19.817 22.563 1.00 27.41 O
ATOM 13 C1' C A 13 43.162 22.033 22.403 1.00 22.98 C
ATOM 14 N1 C A 13 41.867 22.578 22.017 1.00 21.08 N
ATOM 15 C2 C A 13 40.741 21.974 22.549 1.00 21.60 C
ATOM 16 O2 C A 13 40.885 21.038 23.347 1.00 22.60 O
ATOM 17 N3 C A 13 39.532 22.426 22.207 1.00 20.48 N
ATOM 18 C4 C A 13 39.429 23.431 21.382 1.00 20.55 C
ATOM 19 N4 C A 13 38.208 23.838 21.084 1.00 21.34 N
ATOM 20 C5 C A 13 40.564 24.061 20.818 1.00 20.59 C
ATOM 21 C6 C A 13 41.759 23.600 21.153 1.00 19.94 C
ATOM 22 P C A 14 44.570 19.106 18.744 1.00 23.88 P
ATOM 23 OP1 C A 14 45.718 18.262 18.406 1.00 24.08 O
ATOM 24 OP2 C A 14 43.984 20.016 17.726 1.00 22.30 O
ATOM 25 O5' C A 14 43.437 18.138 19.298 1.00 25.34 O
TER
ATOM 1 O3' U B 11 46.002 32.025 17.001 1.00 25.34 O
ATOM 2 P G B 12 45.104 31.018 16.145 1.00 24.80 P
ATOM 3 OP1 G B 12 45.977 30.220 15.279 1.00 27.77 O
ATOM 4 OP2 G B 12 43.997 31.775 15.566 1.00 25.23 O
ATOM 5 O5' G B 12 44.514 30.043 17.225 1.00 24.57 O
ATOM 6 C5' G B 12 45.371 29.073 17.728 1.00 25.00 C
ATOM 7 C4' G B 12 44.595 28.133 18.597 1.00 26.18 C
ATOM 8 O4' G B 12 43.581 28.880 19.308 1.00 28.03 O
ATOM 9 C3' G B 12 43.854 27.040 17.863 1.00 25.46 C
ATOM 10 O3' G B 12 43.883 25.851 18.601 1.00 23.16 O
ATOM 11 C2' G B 12 42.447 27.575 17.744 1.00 27.05 C
ATOM 12 O2' G B 12 41.511 26.525 17.720 1.00 29.56 O
ATOM 13 C1' G B 12 42.307 28.412 18.997 1.00 28.02 C
ATOM 14 N9 G B 12 41.461 29.577 18.852 1.00 30.03 N
ATOM 15 C8 G B 12 41.544 30.543 17.890 1.00 31.37 C
ATOM 16 N7 G B 12 40.640 31.488 18.035 1.00 32.53 N
ATOM 17 C5 G B 12 39.930 31.126 19.176 1.00 31.61 C
ATOM 18 C6 G B 12 38.830 31.753 19.827 1.00 30.52 C
ATOM 19 O6 G B 12 38.247 32.803 19.527 1.00 30.65 O
ATOM 20 N1 G B 12 38.420 31.061 20.951 1.00 30.08 N
ATOM 21 C2 G B 12 38.999 29.900 21.377 1.00 30.73 C
ATOM 22 N2 G B 12 38.489 29.354 22.475 1.00 31.01 N
ATOM 23 N3 G B 12 40.017 29.301 20.786 1.00 32.07 N
ATOM 24 C4 G B 12 40.432 29.960 19.690 1.00 31.52 C
ATOM 25 P C B 13 43.844 24.469 17.836 1.00 22.42 P
ATOM 26 OP1 C B 13 45.028 24.441 16.943 1.00 21.84 O
ATOM 27 OP2 C B 13 42.472 24.298 17.296 1.00 22.32 O
ATOM 28 O5' C B 13 43.999 23.382 18.991 1.00 22.82 O
TER
ATOM 2 P C A 13 43.844 24.469 17.836 1.00 22.42 P
ATOM 3 OP1 C A 13 45.028 24.441 16.943 1.00 21.84 O
ATOM 4 OP2 C A 13 42.472 24.298 17.296 1.00 22.32 O
ATOM 5 O5' C A 13 43.999 23.382 18.991 1.00 22.82 O
ATOM 6 C5' C A 13 45.146 23.344 19.855 1.00 23.42 C
ATOM 7 C4' C A 13 44.941 22.275 20.920 1.00 23.27 C
ATOM 8 O4' C A 13 44.197 22.883 21.990 1.00 22.87 O
ATOM 9 C3' C A 13 44.121 21.049 20.488 1.00 23.84 C
ATOM 10 O3' C A 13 44.953 19.953 20.052 1.00 24.17 O
ATOM 11 C2' C A 13 43.397 20.679 21.749 1.00 24.05 C
ATOM 12 O2' C A 13 44.161 19.817 22.563 1.00 27.41 O
ATOM 13 C1' C A 13 43.162 22.033 22.403 1.00 22.98 C
ATOM 14 N1 C A 13 41.867 22.578 22.017 1.00 21.08 N
ATOM 15 C2 C A 13 40.741 21.974 22.549 1.00 21.60 C
ATOM 16 O2 C A 13 40.885 21.038 23.347 1.00 22.60 O
ATOM 17 N3 C A 13 39.532 22.426 22.207 1.00 20.48 N
ATOM 18 C4 C A 13 39.429 23.431 21.382 1.00 20.55 C
ATOM 19 N4 C A 13 38.208 23.838 21.084 1.00 21.34 N
ATOM 20 C5 C A 13 40.564 24.061 20.818 1.00 20.59 C
ATOM 21 C6 C A 13 41.759 23.600 21.153 1.00 19.94 C
ATOM 22 P C A 14 44.570 19.106 18.744 1.00 23.88 P
ATOM 23 OP1 C A 14 45.718 18.262 18.406 1.00 24.08 O
ATOM 24 OP2 C A 14 43.984 20.016 17.726 1.00 22.30 O
ATOM 25 O5' C A 14 43.437 18.138 19.298 1.00 25.34 O
TER
ATOM 1 O3' U B 11 46.002 32.025 17.001 1.00 25.34 O
ATOM 2 P G B 12 45.104 31.018 16.145 1.00 24.80 P
ATOM 3 OP1 G B 12 45.977 30.220 15.279 1.00 27.77 O
ATOM 4 OP2 G B 12 43.997 31.775 15.566 1.00 25.23 O
ATOM 5 O5' G B 12 44.514 30.043 17.225 1.00 24.57 O
ATOM 6 C5' G B 12 45.371 29.073 17.728 1.00 25.00 C
ATOM 7 C4' G B 12 44.595 28.133 18.597 1.00 26.18 C
ATOM 8 O4' G B 12 43.581 28.880 19.308 1.00 28.03 O
ATOM 9 C3' G B 12 43.854 27.040 17.863 1.00 25.46 C
ATOM 10 O3' G B 12 43.883 25.851 18.601 1.00 23.16 O
ATOM 11 C2' G B 12 42.447 27.575 17.744 1.00 27.05 C
ATOM 12 O2' G B 12 41.511 26.525 17.720 1.00 29.56 O
ATOM 13 C1' G B 12 42.307 28.412 18.997 1.00 28.02 C
ATOM 14 N9 G B 12 41.461 29.577 18.852 1.00 30.03 N
ATOM 15 C8 G B 12 41.544 30.543 17.890 1.00 31.37 C
ATOM 16 N7 G B 12 40.640 31.488 18.035 1.00 32.53 N
ATOM 17 C5 G B 12 39.930 31.126 19.176 1.00 31.61 C
ATOM 18 C6 G B 12 38.830 31.753 19.827 1.00 30.52 C
ATOM 19 O6 G B 12 38.247 32.803 19.527 1.00 30.65 O
ATOM 20 N1 G B 12 38.420 31.061 20.951 1.00 30.08 N
ATOM 21 C2 G B 12 38.999 29.900 21.377 1.00 30.73 C
ATOM 22 N2 G B 12 38.489 29.354 22.475 1.00 31.01 N
ATOM 23 N3 G B 12 40.017 29.301 20.786 1.00 32.07 N
ATOM 24 C4 G B 12 40.432 29.960 19.690 1.00 31.52 C
ATOM 25 P C B 13 43.844 24.469 17.836 1.00 22.42 P
ATOM 26 OP1 C B 13 45.028 24.441 16.943 1.00 21.84 O
ATOM 27 OP2 C B 13 42.472 24.298 17.296 1.00 22.32 O
ATOM 28 O5' C B 13 43.999 23.382 18.991 1.00 22.82 O
TER
Atoms:
C2: (40.741,21.974,22.549)
OP1: (45.028,24.441,16.943)
OP2: (42.472,24.298,17.296)
C4: (39.429,23.431,21.382)
O5': (43.999,23.382,18.991)
C3': (44.121,21.049,20.488)
C1': (43.162,22.033,22.403)
O4': (44.197,22.883,21.990)
C5': (45.146,23.344,19.855)
P: (43.844,24.469,17.836)
O2: (40.885,21.038,23.347)
C4': (44.941,22.275,20.920)
C2': (43.397,20.679,21.749)
O2': (44.161,19.817,22.563)
N1: (41.867,22.578,22.017)
N3: (39.532,22.426,22.207)
N4: (38.208,23.838,21.084)
C6: (41.759,23.600,21.153)
C5: (40.564,24.061,20.818)
O3': (44.953,19.953,20.052)
OP1: (45.028,24.441,16.943)
OP2: (42.472,24.298,17.296)
C4: (39.429,23.431,21.382)
O5': (43.999,23.382,18.991)
C3': (44.121,21.049,20.488)
C1': (43.162,22.033,22.403)
O4': (44.197,22.883,21.990)
C5': (45.146,23.344,19.855)
P: (43.844,24.469,17.836)
O2: (40.885,21.038,23.347)
C4': (44.941,22.275,20.920)
C2': (43.397,20.679,21.749)
O2': (44.161,19.817,22.563)
N1: (41.867,22.578,22.017)
N3: (39.532,22.426,22.207)
N4: (38.208,23.838,21.084)
C6: (41.759,23.600,21.153)
C5: (40.564,24.061,20.818)
O3': (44.953,19.953,20.052)
OP1: (45.977,30.220,15.279)
OP2: (43.997,31.775,15.566)
C3': (43.854,27.040,17.863)
C1': (42.307,28.412,18.997)
C5': (45.371,29.073,17.728)
O6: (38.247,32.803,19.527)
O4': (43.581,28.880,19.308)
C8: (41.544,30.543,17.890)
C2: (38.999,29.900,21.377)
C6: (38.830,31.753,19.827)
C5: (39.930,31.126,19.176)
C4: (40.432,29.960,19.690)
P: (45.104,31.018,16.145)
C4': (44.595,28.133,18.597)
C2': (42.447,27.575,17.744)
O2': (41.511,26.525,17.720)
N1: (38.420,31.061,20.951)
N2: (38.489,29.354,22.475)
N3: (40.017,29.301,20.786)
N7: (40.640,31.488,18.035)
N9: (41.461,29.577,18.852)
O5': (44.514,30.043,17.225)
O3': (43.883,25.851,18.601)
OP2: (43.997,31.775,15.566)
C3': (43.854,27.040,17.863)
C1': (42.307,28.412,18.997)
C5': (45.371,29.073,17.728)
O6: (38.247,32.803,19.527)
O4': (43.581,28.880,19.308)
C8: (41.544,30.543,17.890)
C2: (38.999,29.900,21.377)
C6: (38.830,31.753,19.827)
C5: (39.930,31.126,19.176)
C4: (40.432,29.960,19.690)
P: (45.104,31.018,16.145)
C4': (44.595,28.133,18.597)
C2': (42.447,27.575,17.744)
O2': (41.511,26.525,17.720)
N1: (38.420,31.061,20.951)
N2: (38.489,29.354,22.475)
N3: (40.017,29.301,20.786)
N7: (40.640,31.488,18.035)
N9: (41.461,29.577,18.852)
O5': (44.514,30.043,17.225)
O3': (43.883,25.851,18.601)
Image (generated by PyMOL):