Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A7:A8
Extra
PDB:
ATOM 1 O3' C A 6 0.272 24.074 17.042 1.00 20.94 O
ATOM 2 P G A 7 -0.340 25.223 17.955 1.00 23.03 P
ATOM 3 OP1 G A 7 0.880 25.979 18.368 1.00 21.35 O
ATOM 4 OP2 G A 7 -1.223 24.615 18.992 1.00 22.70 O
ATOM 5 O5' G A 7 -1.251 26.066 16.953 1.00 23.14 O
ATOM 6 C5' G A 7 -0.711 26.657 15.781 1.00 21.41 C
ATOM 7 C4' G A 7 -1.146 28.091 15.660 1.00 18.23 C
ATOM 8 O4' G A 7 -2.605 28.177 15.685 1.00 20.19 O
ATOM 9 C3' G A 7 -0.704 29.015 16.788 1.00 18.25 C
ATOM 10 O3' G A 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 11 C2' G A 7 -1.736 30.130 16.692 1.00 18.73 C
ATOM 12 O2' G A 7 -1.478 30.930 15.542 1.00 18.53 O
ATOM 13 C1' G A 7 -3.008 29.322 16.400 1.00 18.54 C
ATOM 14 N9 G A 7 -3.702 28.881 17.632 1.00 18.56 N
ATOM 15 C8 G A 7 -3.600 27.659 18.256 1.00 19.03 C
ATOM 16 N7 G A 7 -4.334 27.562 19.338 1.00 19.30 N
ATOM 17 C5 G A 7 -4.961 28.803 19.439 1.00 19.03 C
ATOM 18 C6 G A 7 -5.874 29.310 20.401 1.00 21.69 C
ATOM 19 O6 G A 7 -6.335 28.714 21.385 1.00 23.01 O
ATOM 20 N1 G A 7 -6.268 30.627 20.136 1.00 18.05 N
ATOM 21 C2 G A 7 -5.819 31.361 19.062 1.00 20.62 C
ATOM 22 N2 G A 7 -6.281 32.618 18.939 1.00 19.93 N
ATOM 23 N3 G A 7 -4.969 30.895 18.154 1.00 20.21 N
ATOM 24 C4 G A 7 -4.576 29.627 18.400 1.00 19.35 C
ATOM 25 P U A 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 26 OP1 U A 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 27 OP2 U A 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 28 O5' U A 8 1.028 31.300 18.215 1.00 17.90 O
TER
ATOM 1 O3' G B 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 2 P U B 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 3 OP1 U B 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 4 OP2 U B 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 5 O5' U B 8 1.028 31.300 18.215 1.00 17.90 O
ATOM 6 C5' U B 8 1.166 32.363 17.285 1.00 16.95 C
ATOM 7 C4' U B 8 0.475 33.590 17.817 1.00 17.94 C
ATOM 8 O4' U B 8 -0.955 33.353 17.860 1.00 19.45 O
ATOM 9 C3' U B 8 0.808 33.951 19.258 1.00 17.22 C
ATOM 10 O3' U B 8 2.047 34.623 19.383 1.00 17.83 O
ATOM 11 C2' U B 8 -0.408 34.769 19.682 1.00 15.20 C
ATOM 12 O2' U B 8 -0.406 36.058 19.094 1.00 16.52 O
ATOM 13 C1' U B 8 -1.516 33.971 19.005 1.00 17.31 C
ATOM 14 N1 U B 8 -2.070 32.923 19.883 1.00 16.54 N
ATOM 15 C2 U B 8 -3.140 33.278 20.699 1.00 19.82 C
ATOM 16 O2 U B 8 -3.605 34.408 20.725 1.00 18.20 O
ATOM 17 N3 U B 8 -3.623 32.260 21.492 1.00 20.64 N
ATOM 18 C4 U B 8 -3.161 30.957 21.551 1.00 21.09 C
ATOM 19 O4 U B 8 -3.715 30.148 22.308 1.00 20.68 O
ATOM 20 C5 U B 8 -2.053 30.672 20.684 1.00 17.78 C
ATOM 21 C6 U B 8 -1.565 31.643 19.894 1.00 16.90 C
ATOM 22 P U B 9 2.893 34.562 20.751 1.00 18.31 P
ATOM 23 OP1 U B 9 3.650 33.296 20.809 1.00 15.97 O
ATOM 24 OP2 U B 9 1.903 34.832 21.801 1.00 18.33 O
ATOM 25 O5' U B 9 3.826 35.844 20.502 1.00 18.59 O
TER
ATOM 2 P G A 7 -0.340 25.223 17.955 1.00 23.03 P
ATOM 3 OP1 G A 7 0.880 25.979 18.368 1.00 21.35 O
ATOM 4 OP2 G A 7 -1.223 24.615 18.992 1.00 22.70 O
ATOM 5 O5' G A 7 -1.251 26.066 16.953 1.00 23.14 O
ATOM 6 C5' G A 7 -0.711 26.657 15.781 1.00 21.41 C
ATOM 7 C4' G A 7 -1.146 28.091 15.660 1.00 18.23 C
ATOM 8 O4' G A 7 -2.605 28.177 15.685 1.00 20.19 O
ATOM 9 C3' G A 7 -0.704 29.015 16.788 1.00 18.25 C
ATOM 10 O3' G A 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 11 C2' G A 7 -1.736 30.130 16.692 1.00 18.73 C
ATOM 12 O2' G A 7 -1.478 30.930 15.542 1.00 18.53 O
ATOM 13 C1' G A 7 -3.008 29.322 16.400 1.00 18.54 C
ATOM 14 N9 G A 7 -3.702 28.881 17.632 1.00 18.56 N
ATOM 15 C8 G A 7 -3.600 27.659 18.256 1.00 19.03 C
ATOM 16 N7 G A 7 -4.334 27.562 19.338 1.00 19.30 N
ATOM 17 C5 G A 7 -4.961 28.803 19.439 1.00 19.03 C
ATOM 18 C6 G A 7 -5.874 29.310 20.401 1.00 21.69 C
ATOM 19 O6 G A 7 -6.335 28.714 21.385 1.00 23.01 O
ATOM 20 N1 G A 7 -6.268 30.627 20.136 1.00 18.05 N
ATOM 21 C2 G A 7 -5.819 31.361 19.062 1.00 20.62 C
ATOM 22 N2 G A 7 -6.281 32.618 18.939 1.00 19.93 N
ATOM 23 N3 G A 7 -4.969 30.895 18.154 1.00 20.21 N
ATOM 24 C4 G A 7 -4.576 29.627 18.400 1.00 19.35 C
ATOM 25 P U A 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 26 OP1 U A 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 27 OP2 U A 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 28 O5' U A 8 1.028 31.300 18.215 1.00 17.90 O
TER
ATOM 1 O3' G B 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 2 P U B 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 3 OP1 U B 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 4 OP2 U B 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 5 O5' U B 8 1.028 31.300 18.215 1.00 17.90 O
ATOM 6 C5' U B 8 1.166 32.363 17.285 1.00 16.95 C
ATOM 7 C4' U B 8 0.475 33.590 17.817 1.00 17.94 C
ATOM 8 O4' U B 8 -0.955 33.353 17.860 1.00 19.45 O
ATOM 9 C3' U B 8 0.808 33.951 19.258 1.00 17.22 C
ATOM 10 O3' U B 8 2.047 34.623 19.383 1.00 17.83 O
ATOM 11 C2' U B 8 -0.408 34.769 19.682 1.00 15.20 C
ATOM 12 O2' U B 8 -0.406 36.058 19.094 1.00 16.52 O
ATOM 13 C1' U B 8 -1.516 33.971 19.005 1.00 17.31 C
ATOM 14 N1 U B 8 -2.070 32.923 19.883 1.00 16.54 N
ATOM 15 C2 U B 8 -3.140 33.278 20.699 1.00 19.82 C
ATOM 16 O2 U B 8 -3.605 34.408 20.725 1.00 18.20 O
ATOM 17 N3 U B 8 -3.623 32.260 21.492 1.00 20.64 N
ATOM 18 C4 U B 8 -3.161 30.957 21.551 1.00 21.09 C
ATOM 19 O4 U B 8 -3.715 30.148 22.308 1.00 20.68 O
ATOM 20 C5 U B 8 -2.053 30.672 20.684 1.00 17.78 C
ATOM 21 C6 U B 8 -1.565 31.643 19.894 1.00 16.90 C
ATOM 22 P U B 9 2.893 34.562 20.751 1.00 18.31 P
ATOM 23 OP1 U B 9 3.650 33.296 20.809 1.00 15.97 O
ATOM 24 OP2 U B 9 1.903 34.832 21.801 1.00 18.33 O
ATOM 25 O5' U B 9 3.826 35.844 20.502 1.00 18.59 O
TER
Atoms:
OP1: (0.880,25.979,18.368)
OP2: (-1.223,24.615,18.992)
C3': (-0.704,29.015,16.788)
C1': (-3.008,29.322,16.400)
C5': (-0.711,26.657,15.781)
O6: (-6.335,28.714,21.385)
O4': (-2.605,28.177,15.685)
C8: (-3.600,27.659,18.256)
C2: (-5.819,31.361,19.062)
C6: (-5.874,29.310,20.401)
C5: (-4.961,28.803,19.439)
C4: (-4.576,29.627,18.400)
P: (-0.340,25.223,17.955)
C4': (-1.146,28.091,15.660)
C2': (-1.736,30.130,16.692)
O2': (-1.478,30.930,15.542)
N1: (-6.268,30.627,20.136)
N2: (-6.281,32.618,18.939)
N3: (-4.969,30.895,18.154)
N7: (-4.334,27.562,19.338)
N9: (-3.702,28.881,17.632)
O5': (-1.251,26.066,16.953)
O3': (0.633,29.455,16.623)
OP2: (-1.223,24.615,18.992)
C3': (-0.704,29.015,16.788)
C1': (-3.008,29.322,16.400)
C5': (-0.711,26.657,15.781)
O6: (-6.335,28.714,21.385)
O4': (-2.605,28.177,15.685)
C8: (-3.600,27.659,18.256)
C2: (-5.819,31.361,19.062)
C6: (-5.874,29.310,20.401)
C5: (-4.961,28.803,19.439)
C4: (-4.576,29.627,18.400)
P: (-0.340,25.223,17.955)
C4': (-1.146,28.091,15.660)
C2': (-1.736,30.130,16.692)
O2': (-1.478,30.930,15.542)
N1: (-6.268,30.627,20.136)
N2: (-6.281,32.618,18.939)
N3: (-4.969,30.895,18.154)
N7: (-4.334,27.562,19.338)
N9: (-3.702,28.881,17.632)
O5': (-1.251,26.066,16.953)
O3': (0.633,29.455,16.623)
C4: (-3.161,30.957,21.551)
N3: (-3.623,32.260,21.492)
OP1: (2.919,29.873,17.394)
OP2: (1.181,28.962,19.005)
C2: (-3.140,33.278,20.699)
C1': (-1.516,33.971,19.005)
C3': (0.808,33.951,19.258)
O5': (1.028,31.300,18.215)
O4': (-0.955,33.353,17.860)
C5': (1.166,32.363,17.285)
P: (1.542,29.843,17.890)
C4': (0.475,33.590,17.817)
C2': (-0.408,34.769,19.682)
O2': (-0.406,36.058,19.094)
N1: (-2.070,32.923,19.883)
O4: (-3.715,30.148,22.308)
O2: (-3.605,34.408,20.725)
C6: (-1.565,31.643,19.894)
C5: (-2.053,30.672,20.684)
O3': (2.047,34.623,19.383)
N3: (-3.623,32.260,21.492)
OP1: (2.919,29.873,17.394)
OP2: (1.181,28.962,19.005)
C2: (-3.140,33.278,20.699)
C1': (-1.516,33.971,19.005)
C3': (0.808,33.951,19.258)
O5': (1.028,31.300,18.215)
O4': (-0.955,33.353,17.860)
C5': (1.166,32.363,17.285)
P: (1.542,29.843,17.890)
C4': (0.475,33.590,17.817)
C2': (-0.408,34.769,19.682)
O2': (-0.406,36.058,19.094)
N1: (-2.070,32.923,19.883)
O4: (-3.715,30.148,22.308)
O2: (-3.605,34.408,20.725)
C6: (-1.565,31.643,19.894)
C5: (-2.053,30.672,20.684)
O3': (2.047,34.623,19.383)
Image (generated by PyMOL):