Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A29:A30
Extra
PDB:
ATOM 1 O3' U A 28 2.254 -3.771 41.538 1.00 32.31 O
ATOM 2 P G A 29 1.789 -5.301 41.695 1.00 36.14 P
ATOM 3 OP1 G A 29 2.488 -5.849 42.881 1.00 40.48 O
ATOM 4 OP2 G A 29 1.991 -5.959 40.381 1.00 31.71 O
ATOM 5 O5' G A 29 0.234 -5.169 41.996 1.00 29.43 O
ATOM 6 C5' G A 29 -0.224 -4.715 43.258 1.00 32.30 C
ATOM 7 C4' G A 29 -1.728 -4.746 43.338 1.00 32.93 C
ATOM 8 O4' G A 29 -2.291 -3.877 42.322 1.00 32.36 O
ATOM 9 C3' G A 29 -2.381 -6.091 43.069 1.00 32.23 C
ATOM 10 O3' G A 29 -2.350 -6.961 44.186 1.00 36.96 O
ATOM 11 C2' G A 29 -3.786 -5.690 42.643 1.00 31.16 C
ATOM 12 O2' G A 29 -4.569 -5.330 43.770 1.00 34.87 O
ATOM 13 C1' G A 29 -3.499 -4.428 41.836 1.00 33.47 C
ATOM 14 N9 G A 29 -3.339 -4.723 40.402 1.00 31.30 N
ATOM 15 C8 G A 29 -2.169 -4.802 39.688 1.00 29.65 C
ATOM 16 N7 G A 29 -2.370 -5.093 38.432 1.00 32.03 N
ATOM 17 C5 G A 29 -3.748 -5.217 38.311 1.00 30.40 C
ATOM 18 C6 G A 29 -4.558 -5.519 37.184 1.00 32.16 C
ATOM 19 O6 G A 29 -4.209 -5.751 36.020 1.00 32.75 O
ATOM 20 N1 G A 29 -5.909 -5.540 37.515 1.00 30.16 N
ATOM 21 C2 G A 29 -6.417 -5.301 38.766 1.00 30.57 C
ATOM 22 N2 G A 29 -7.749 -5.367 38.891 1.00 30.61 N
ATOM 23 N3 G A 29 -5.674 -5.019 39.821 1.00 30.65 N
ATOM 24 C4 G A 29 -4.360 -4.991 39.521 1.00 30.16 C
ATOM 25 P U A 30 -2.534 -8.545 43.984 1.00 31.06 P
ATOM 26 OP1 U A 30 -2.349 -9.179 45.311 1.00 35.14 O
ATOM 27 OP2 U A 30 -1.642 -8.950 42.870 1.00 31.08 O
ATOM 28 O5' U A 30 -4.054 -8.667 43.532 1.00 24.36 O
TER
ATOM 1 O3' G B 29 -2.350 -6.961 44.186 1.00 36.96 O
ATOM 2 P U B 30 -2.534 -8.545 43.984 1.00 31.06 P
ATOM 3 OP1 U B 30 -2.349 -9.179 45.311 1.00 35.14 O
ATOM 4 OP2 U B 30 -1.642 -8.950 42.870 1.00 31.08 O
ATOM 5 O5' U B 30 -4.054 -8.667 43.532 1.00 24.36 O
ATOM 6 C5' U B 30 -5.100 -8.216 44.378 1.00 32.35 C
ATOM 7 C4' U B 30 -6.450 -8.466 43.759 1.00 35.11 C
ATOM 8 O4' U B 30 -6.634 -7.597 42.610 1.00 35.82 O
ATOM 9 C3' U B 30 -6.673 -9.862 43.206 1.00 34.88 C
ATOM 10 O3' U B 30 -7.014 -10.805 44.205 1.00 41.88 O
ATOM 11 C2' U B 30 -7.767 -9.639 42.170 1.00 35.62 C
ATOM 12 O2' U B 30 -9.037 -9.524 42.795 1.00 33.43 O
ATOM 13 C1' U B 30 -7.377 -8.270 41.614 1.00 36.19 C
ATOM 14 N1 U B 30 -6.539 -8.384 40.402 1.00 31.53 N
ATOM 15 C2 U B 30 -7.182 -8.614 39.205 1.00 29.69 C
ATOM 16 O2 U B 30 -8.392 -8.730 39.121 1.00 30.28 O
ATOM 17 N3 U B 30 -6.355 -8.710 38.114 1.00 30.32 N
ATOM 18 C4 U B 30 -4.981 -8.600 38.099 1.00 30.96 C
ATOM 19 O4 U B 30 -4.374 -8.710 37.032 1.00 32.29 O
ATOM 20 C5 U B 30 -4.390 -8.358 39.380 1.00 31.55 C
ATOM 21 C6 U B 30 -5.171 -8.261 40.460 1.00 31.87 C
ATOM 22 P G B 31 -6.952 -12.375 43.884 1.00 44.71 P
ATOM 23 OP1 G B 31 -7.047 -13.092 45.182 1.00 48.49 O
ATOM 24 OP2 G B 31 -5.759 -12.601 43.028 1.00 34.87 O
ATOM 25 O5' G B 31 -8.279 -12.608 43.038 1.00 38.16 O
TER
ATOM 2 P G A 29 1.789 -5.301 41.695 1.00 36.14 P
ATOM 3 OP1 G A 29 2.488 -5.849 42.881 1.00 40.48 O
ATOM 4 OP2 G A 29 1.991 -5.959 40.381 1.00 31.71 O
ATOM 5 O5' G A 29 0.234 -5.169 41.996 1.00 29.43 O
ATOM 6 C5' G A 29 -0.224 -4.715 43.258 1.00 32.30 C
ATOM 7 C4' G A 29 -1.728 -4.746 43.338 1.00 32.93 C
ATOM 8 O4' G A 29 -2.291 -3.877 42.322 1.00 32.36 O
ATOM 9 C3' G A 29 -2.381 -6.091 43.069 1.00 32.23 C
ATOM 10 O3' G A 29 -2.350 -6.961 44.186 1.00 36.96 O
ATOM 11 C2' G A 29 -3.786 -5.690 42.643 1.00 31.16 C
ATOM 12 O2' G A 29 -4.569 -5.330 43.770 1.00 34.87 O
ATOM 13 C1' G A 29 -3.499 -4.428 41.836 1.00 33.47 C
ATOM 14 N9 G A 29 -3.339 -4.723 40.402 1.00 31.30 N
ATOM 15 C8 G A 29 -2.169 -4.802 39.688 1.00 29.65 C
ATOM 16 N7 G A 29 -2.370 -5.093 38.432 1.00 32.03 N
ATOM 17 C5 G A 29 -3.748 -5.217 38.311 1.00 30.40 C
ATOM 18 C6 G A 29 -4.558 -5.519 37.184 1.00 32.16 C
ATOM 19 O6 G A 29 -4.209 -5.751 36.020 1.00 32.75 O
ATOM 20 N1 G A 29 -5.909 -5.540 37.515 1.00 30.16 N
ATOM 21 C2 G A 29 -6.417 -5.301 38.766 1.00 30.57 C
ATOM 22 N2 G A 29 -7.749 -5.367 38.891 1.00 30.61 N
ATOM 23 N3 G A 29 -5.674 -5.019 39.821 1.00 30.65 N
ATOM 24 C4 G A 29 -4.360 -4.991 39.521 1.00 30.16 C
ATOM 25 P U A 30 -2.534 -8.545 43.984 1.00 31.06 P
ATOM 26 OP1 U A 30 -2.349 -9.179 45.311 1.00 35.14 O
ATOM 27 OP2 U A 30 -1.642 -8.950 42.870 1.00 31.08 O
ATOM 28 O5' U A 30 -4.054 -8.667 43.532 1.00 24.36 O
TER
ATOM 1 O3' G B 29 -2.350 -6.961 44.186 1.00 36.96 O
ATOM 2 P U B 30 -2.534 -8.545 43.984 1.00 31.06 P
ATOM 3 OP1 U B 30 -2.349 -9.179 45.311 1.00 35.14 O
ATOM 4 OP2 U B 30 -1.642 -8.950 42.870 1.00 31.08 O
ATOM 5 O5' U B 30 -4.054 -8.667 43.532 1.00 24.36 O
ATOM 6 C5' U B 30 -5.100 -8.216 44.378 1.00 32.35 C
ATOM 7 C4' U B 30 -6.450 -8.466 43.759 1.00 35.11 C
ATOM 8 O4' U B 30 -6.634 -7.597 42.610 1.00 35.82 O
ATOM 9 C3' U B 30 -6.673 -9.862 43.206 1.00 34.88 C
ATOM 10 O3' U B 30 -7.014 -10.805 44.205 1.00 41.88 O
ATOM 11 C2' U B 30 -7.767 -9.639 42.170 1.00 35.62 C
ATOM 12 O2' U B 30 -9.037 -9.524 42.795 1.00 33.43 O
ATOM 13 C1' U B 30 -7.377 -8.270 41.614 1.00 36.19 C
ATOM 14 N1 U B 30 -6.539 -8.384 40.402 1.00 31.53 N
ATOM 15 C2 U B 30 -7.182 -8.614 39.205 1.00 29.69 C
ATOM 16 O2 U B 30 -8.392 -8.730 39.121 1.00 30.28 O
ATOM 17 N3 U B 30 -6.355 -8.710 38.114 1.00 30.32 N
ATOM 18 C4 U B 30 -4.981 -8.600 38.099 1.00 30.96 C
ATOM 19 O4 U B 30 -4.374 -8.710 37.032 1.00 32.29 O
ATOM 20 C5 U B 30 -4.390 -8.358 39.380 1.00 31.55 C
ATOM 21 C6 U B 30 -5.171 -8.261 40.460 1.00 31.87 C
ATOM 22 P G B 31 -6.952 -12.375 43.884 1.00 44.71 P
ATOM 23 OP1 G B 31 -7.047 -13.092 45.182 1.00 48.49 O
ATOM 24 OP2 G B 31 -5.759 -12.601 43.028 1.00 34.87 O
ATOM 25 O5' G B 31 -8.279 -12.608 43.038 1.00 38.16 O
TER
Atoms:
OP1: (2.488,-5.849,42.881)
OP2: (1.991,-5.959,40.381)
C3': (-2.381,-6.091,43.069)
C1': (-3.499,-4.428,41.836)
C5': (-0.224,-4.715,43.258)
O6: (-4.209,-5.751,36.020)
O4': (-2.291,-3.877,42.322)
C8: (-2.169,-4.802,39.688)
C2: (-6.417,-5.301,38.766)
C6: (-4.558,-5.519,37.184)
C5: (-3.748,-5.217,38.311)
C4: (-4.360,-4.991,39.521)
P: (1.789,-5.301,41.695)
C4': (-1.728,-4.746,43.338)
C2': (-3.786,-5.690,42.643)
O2': (-4.569,-5.330,43.770)
N1: (-5.909,-5.540,37.515)
N2: (-7.749,-5.367,38.891)
N3: (-5.674,-5.019,39.821)
N7: (-2.370,-5.093,38.432)
N9: (-3.339,-4.723,40.402)
O5': (0.234,-5.169,41.996)
O3': (-2.350,-6.961,44.186)
OP2: (1.991,-5.959,40.381)
C3': (-2.381,-6.091,43.069)
C1': (-3.499,-4.428,41.836)
C5': (-0.224,-4.715,43.258)
O6: (-4.209,-5.751,36.020)
O4': (-2.291,-3.877,42.322)
C8: (-2.169,-4.802,39.688)
C2: (-6.417,-5.301,38.766)
C6: (-4.558,-5.519,37.184)
C5: (-3.748,-5.217,38.311)
C4: (-4.360,-4.991,39.521)
P: (1.789,-5.301,41.695)
C4': (-1.728,-4.746,43.338)
C2': (-3.786,-5.690,42.643)
O2': (-4.569,-5.330,43.770)
N1: (-5.909,-5.540,37.515)
N2: (-7.749,-5.367,38.891)
N3: (-5.674,-5.019,39.821)
N7: (-2.370,-5.093,38.432)
N9: (-3.339,-4.723,40.402)
O5': (0.234,-5.169,41.996)
O3': (-2.350,-6.961,44.186)
C4: (-4.981,-8.600,38.099)
N3: (-6.355,-8.710,38.114)
OP1: (-2.349,-9.179,45.311)
OP2: (-1.642,-8.950,42.870)
C2: (-7.182,-8.614,39.205)
C1': (-7.377,-8.270,41.614)
C3': (-6.673,-9.862,43.206)
O5': (-4.054,-8.667,43.532)
O4': (-6.634,-7.597,42.610)
C5': (-5.100,-8.216,44.378)
P: (-2.534,-8.545,43.984)
C4': (-6.450,-8.466,43.759)
C2': (-7.767,-9.639,42.170)
O2': (-9.037,-9.524,42.795)
N1: (-6.539,-8.384,40.402)
O4: (-4.374,-8.710,37.032)
O2: (-8.392,-8.730,39.121)
C6: (-5.171,-8.261,40.460)
C5: (-4.390,-8.358,39.380)
O3': (-7.014,-10.805,44.205)
N3: (-6.355,-8.710,38.114)
OP1: (-2.349,-9.179,45.311)
OP2: (-1.642,-8.950,42.870)
C2: (-7.182,-8.614,39.205)
C1': (-7.377,-8.270,41.614)
C3': (-6.673,-9.862,43.206)
O5': (-4.054,-8.667,43.532)
O4': (-6.634,-7.597,42.610)
C5': (-5.100,-8.216,44.378)
P: (-2.534,-8.545,43.984)
C4': (-6.450,-8.466,43.759)
C2': (-7.767,-9.639,42.170)
O2': (-9.037,-9.524,42.795)
N1: (-6.539,-8.384,40.402)
O4: (-4.374,-8.710,37.032)
O2: (-8.392,-8.730,39.121)
C6: (-5.171,-8.261,40.460)
C5: (-4.390,-8.358,39.380)
O3': (-7.014,-10.805,44.205)
Image (generated by PyMOL):