Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1U8D:A35:A34
Extra
PDB:
ATOM 1 O3' U A 34 4.958 17.936 4.127 1.00 22.14 O
ATOM 2 P C A 35 6.149 18.965 4.371 1.00 25.95 P
ATOM 3 OP1 C A 35 5.898 20.166 3.536 1.00 23.44 O
ATOM 4 OP2 C A 35 7.459 18.286 4.288 1.00 25.26 O
ATOM 5 O5' C A 35 5.932 19.376 5.884 1.00 22.51 O
ATOM 6 C5' C A 35 4.862 20.228 6.238 1.00 24.64 C
ATOM 7 C4' C A 35 4.500 19.987 7.664 1.00 23.18 C
ATOM 8 O4' C A 35 3.946 18.653 7.796 1.00 22.19 O
ATOM 9 C3' C A 35 5.714 19.971 8.569 1.00 23.50 C
ATOM 10 O3' C A 35 6.031 21.297 8.951 1.00 23.96 O
ATOM 11 C2' C A 35 5.211 19.146 9.739 1.00 22.22 C
ATOM 12 O2' C A 35 4.390 19.925 10.581 1.00 23.29 O
ATOM 13 C1' C A 35 4.379 18.081 9.020 1.00 20.79 C
ATOM 14 N1 C A 35 5.148 16.857 8.718 1.00 18.62 N
ATOM 15 C2 C A 35 5.579 16.061 9.782 1.00 18.06 C
ATOM 16 O2 C A 35 5.294 16.403 10.944 1.00 18.10 O
ATOM 17 N3 C A 35 6.286 14.924 9.529 1.00 18.43 N
ATOM 18 C4 C A 35 6.541 14.559 8.278 1.00 16.95 C
ATOM 19 N4 C A 35 7.187 13.390 8.096 1.00 16.78 N
ATOM 20 C5 C A 35 6.127 15.362 7.156 1.00 18.20 C
ATOM 21 C6 C A 35 5.435 16.496 7.425 1.00 18.70 C
ATOM 22 P U A 36 7.545 21.802 8.901 1.00 26.70 P
ATOM 23 OP1 U A 36 7.531 23.156 9.484 1.00 26.93 O
ATOM 24 OP2 U A 36 8.082 21.612 7.532 1.00 25.00 O
ATOM 25 O5' U A 36 8.299 20.823 9.912 1.00 25.55 O
TER
ATOM 1 O3' U B 33 3.091 15.908 -1.719 1.00 21.98 O
ATOM 2 P U B 34 4.393 16.672 -1.154 1.00 24.27 P
ATOM 3 OP1 U B 34 4.112 18.081 -1.444 1.00 21.67 O
ATOM 4 OP2 U B 34 5.651 16.051 -1.658 1.00 22.02 O
ATOM 5 O5' U B 34 4.355 16.404 0.420 1.00 21.65 O
ATOM 6 C5' U B 34 3.224 16.736 1.195 1.00 22.80 C
ATOM 7 C4' U B 34 3.533 16.647 2.677 1.00 22.95 C
ATOM 8 O4' U B 34 3.474 15.273 3.129 1.00 24.98 O
ATOM 9 C3' U B 34 4.962 17.109 2.990 1.00 23.23 C
ATOM 10 O3' U B 34 4.958 17.936 4.127 1.00 22.14 O
ATOM 11 C2' U B 34 5.807 15.844 3.138 1.00 22.97 C
ATOM 12 O2' U B 34 6.804 15.917 4.151 1.00 21.66 O
ATOM 13 C1' U B 34 4.739 14.866 3.606 1.00 21.87 C
ATOM 14 N1 U B 34 4.895 13.418 3.466 1.00 20.97 N
ATOM 15 C2 U B 34 4.504 12.676 4.556 1.00 18.94 C
ATOM 16 O2 U B 34 4.042 13.182 5.570 1.00 19.40 O
ATOM 17 N3 U B 34 4.657 11.327 4.423 1.00 19.76 N
ATOM 18 C4 U B 34 5.143 10.659 3.335 1.00 19.27 C
ATOM 19 O4 U B 34 5.181 9.441 3.367 1.00 19.94 O
ATOM 20 C5 U B 34 5.533 11.493 2.231 1.00 19.78 C
ATOM 21 C6 U B 34 5.398 12.822 2.336 1.00 21.36 C
ATOM 22 P C B 35 6.149 18.965 4.371 1.00 25.95 P
ATOM 23 OP1 C B 35 5.898 20.166 3.536 1.00 23.44 O
ATOM 24 OP2 C B 35 7.459 18.286 4.288 1.00 25.26 O
ATOM 25 O5' C B 35 5.932 19.376 5.884 1.00 22.51 O
TER
ATOM 2 P C A 35 6.149 18.965 4.371 1.00 25.95 P
ATOM 3 OP1 C A 35 5.898 20.166 3.536 1.00 23.44 O
ATOM 4 OP2 C A 35 7.459 18.286 4.288 1.00 25.26 O
ATOM 5 O5' C A 35 5.932 19.376 5.884 1.00 22.51 O
ATOM 6 C5' C A 35 4.862 20.228 6.238 1.00 24.64 C
ATOM 7 C4' C A 35 4.500 19.987 7.664 1.00 23.18 C
ATOM 8 O4' C A 35 3.946 18.653 7.796 1.00 22.19 O
ATOM 9 C3' C A 35 5.714 19.971 8.569 1.00 23.50 C
ATOM 10 O3' C A 35 6.031 21.297 8.951 1.00 23.96 O
ATOM 11 C2' C A 35 5.211 19.146 9.739 1.00 22.22 C
ATOM 12 O2' C A 35 4.390 19.925 10.581 1.00 23.29 O
ATOM 13 C1' C A 35 4.379 18.081 9.020 1.00 20.79 C
ATOM 14 N1 C A 35 5.148 16.857 8.718 1.00 18.62 N
ATOM 15 C2 C A 35 5.579 16.061 9.782 1.00 18.06 C
ATOM 16 O2 C A 35 5.294 16.403 10.944 1.00 18.10 O
ATOM 17 N3 C A 35 6.286 14.924 9.529 1.00 18.43 N
ATOM 18 C4 C A 35 6.541 14.559 8.278 1.00 16.95 C
ATOM 19 N4 C A 35 7.187 13.390 8.096 1.00 16.78 N
ATOM 20 C5 C A 35 6.127 15.362 7.156 1.00 18.20 C
ATOM 21 C6 C A 35 5.435 16.496 7.425 1.00 18.70 C
ATOM 22 P U A 36 7.545 21.802 8.901 1.00 26.70 P
ATOM 23 OP1 U A 36 7.531 23.156 9.484 1.00 26.93 O
ATOM 24 OP2 U A 36 8.082 21.612 7.532 1.00 25.00 O
ATOM 25 O5' U A 36 8.299 20.823 9.912 1.00 25.55 O
TER
ATOM 1 O3' U B 33 3.091 15.908 -1.719 1.00 21.98 O
ATOM 2 P U B 34 4.393 16.672 -1.154 1.00 24.27 P
ATOM 3 OP1 U B 34 4.112 18.081 -1.444 1.00 21.67 O
ATOM 4 OP2 U B 34 5.651 16.051 -1.658 1.00 22.02 O
ATOM 5 O5' U B 34 4.355 16.404 0.420 1.00 21.65 O
ATOM 6 C5' U B 34 3.224 16.736 1.195 1.00 22.80 C
ATOM 7 C4' U B 34 3.533 16.647 2.677 1.00 22.95 C
ATOM 8 O4' U B 34 3.474 15.273 3.129 1.00 24.98 O
ATOM 9 C3' U B 34 4.962 17.109 2.990 1.00 23.23 C
ATOM 10 O3' U B 34 4.958 17.936 4.127 1.00 22.14 O
ATOM 11 C2' U B 34 5.807 15.844 3.138 1.00 22.97 C
ATOM 12 O2' U B 34 6.804 15.917 4.151 1.00 21.66 O
ATOM 13 C1' U B 34 4.739 14.866 3.606 1.00 21.87 C
ATOM 14 N1 U B 34 4.895 13.418 3.466 1.00 20.97 N
ATOM 15 C2 U B 34 4.504 12.676 4.556 1.00 18.94 C
ATOM 16 O2 U B 34 4.042 13.182 5.570 1.00 19.40 O
ATOM 17 N3 U B 34 4.657 11.327 4.423 1.00 19.76 N
ATOM 18 C4 U B 34 5.143 10.659 3.335 1.00 19.27 C
ATOM 19 O4 U B 34 5.181 9.441 3.367 1.00 19.94 O
ATOM 20 C5 U B 34 5.533 11.493 2.231 1.00 19.78 C
ATOM 21 C6 U B 34 5.398 12.822 2.336 1.00 21.36 C
ATOM 22 P C B 35 6.149 18.965 4.371 1.00 25.95 P
ATOM 23 OP1 C B 35 5.898 20.166 3.536 1.00 23.44 O
ATOM 24 OP2 C B 35 7.459 18.286 4.288 1.00 25.26 O
ATOM 25 O5' C B 35 5.932 19.376 5.884 1.00 22.51 O
TER
Atoms:
C2: (5.579,16.061,9.782)
OP1: (5.898,20.166,3.536)
OP2: (7.459,18.286,4.288)
C4: (6.541,14.559,8.278)
O5': (5.932,19.376,5.884)
C3': (5.714,19.971,8.569)
C1': (4.379,18.081,9.020)
O4': (3.946,18.653,7.796)
C5': (4.862,20.228,6.238)
P: (6.149,18.965,4.371)
O2: (5.294,16.403,10.944)
C4': (4.500,19.987,7.664)
C2': (5.211,19.146,9.739)
O2': (4.390,19.925,10.581)
N1: (5.148,16.857,8.718)
N3: (6.286,14.924,9.529)
N4: (7.187,13.390,8.096)
C6: (5.435,16.496,7.425)
C5: (6.127,15.362,7.156)
O3': (6.031,21.297,8.951)
OP1: (5.898,20.166,3.536)
OP2: (7.459,18.286,4.288)
C4: (6.541,14.559,8.278)
O5': (5.932,19.376,5.884)
C3': (5.714,19.971,8.569)
C1': (4.379,18.081,9.020)
O4': (3.946,18.653,7.796)
C5': (4.862,20.228,6.238)
P: (6.149,18.965,4.371)
O2: (5.294,16.403,10.944)
C4': (4.500,19.987,7.664)
C2': (5.211,19.146,9.739)
O2': (4.390,19.925,10.581)
N1: (5.148,16.857,8.718)
N3: (6.286,14.924,9.529)
N4: (7.187,13.390,8.096)
C6: (5.435,16.496,7.425)
C5: (6.127,15.362,7.156)
O3': (6.031,21.297,8.951)
C4: (5.143,10.659,3.335)
N3: (4.657,11.327,4.423)
OP1: (4.112,18.081,-1.444)
OP2: (5.651,16.051,-1.658)
C2: (4.504,12.676,4.556)
C1': (4.739,14.866,3.606)
C3': (4.962,17.109,2.990)
O5': (4.355,16.404,0.420)
O4': (3.474,15.273,3.129)
C5': (3.224,16.736,1.195)
P: (4.393,16.672,-1.154)
C4': (3.533,16.647,2.677)
C2': (5.807,15.844,3.138)
O2': (6.804,15.917,4.151)
N1: (4.895,13.418,3.466)
O4: (5.181,9.441,3.367)
O2: (4.042,13.182,5.570)
C6: (5.398,12.822,2.336)
C5: (5.533,11.493,2.231)
O3': (4.958,17.936,4.127)
N3: (4.657,11.327,4.423)
OP1: (4.112,18.081,-1.444)
OP2: (5.651,16.051,-1.658)
C2: (4.504,12.676,4.556)
C1': (4.739,14.866,3.606)
C3': (4.962,17.109,2.990)
O5': (4.355,16.404,0.420)
O4': (3.474,15.273,3.129)
C5': (3.224,16.736,1.195)
P: (4.393,16.672,-1.154)
C4': (3.533,16.647,2.677)
C2': (5.807,15.844,3.138)
O2': (6.804,15.917,4.151)
N1: (4.895,13.418,3.466)
O4: (5.181,9.441,3.367)
O2: (4.042,13.182,5.570)
C6: (5.398,12.822,2.336)
C5: (5.533,11.493,2.231)
O3': (4.958,17.936,4.127)
Image (generated by PyMOL):