Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0970:0968
Extra
PDB:
ATOM 1 O3' C A 969 58.017 52.770 110.809 1.00 47.07 O
ATOM 2 P C A 970 56.749 53.342 110.014 1.00 47.89 P
ATOM 3 OP1 C A 970 55.876 52.192 109.671 1.00 48.89 O
ATOM 4 OP2 C A 970 57.258 54.235 108.927 1.00 45.33 O
ATOM 5 O5' C A 970 55.998 54.200 111.128 1.00 44.42 O
ATOM 6 C5' C A 970 54.780 54.898 110.849 1.00 40.86 C
ATOM 7 C4' C A 970 54.218 55.475 112.124 1.00 40.83 C
ATOM 8 O4' C A 970 55.199 56.330 112.767 1.00 42.41 O
ATOM 9 C3' C A 970 53.021 56.382 111.941 1.00 41.52 C
ATOM 10 O3' C A 970 51.837 55.633 111.779 1.00 40.28 O
ATOM 11 C2' C A 970 53.036 57.208 113.218 1.00 42.35 C
ATOM 12 O2' C A 970 52.521 56.523 114.341 1.00 43.80 O
ATOM 13 C1' C A 970 54.539 57.419 113.409 1.00 43.71 C
ATOM 14 N1 C A 970 55.031 58.698 112.838 1.00 45.16 N
ATOM 15 C2 C A 970 54.509 59.910 113.331 1.00 45.55 C
ATOM 16 O2 C A 970 53.629 59.880 114.203 1.00 45.87 O
ATOM 17 N3 C A 970 54.977 61.078 112.841 1.00 46.45 N
ATOM 18 C4 C A 970 55.915 61.077 111.894 1.00 46.67 C
ATOM 19 N4 C A 970 56.352 62.259 111.448 1.00 48.87 N
ATOM 20 C5 C A 970 56.449 59.867 111.362 1.00 45.62 C
ATOM 21 C6 C A 970 55.984 58.714 111.856 1.00 45.33 C
ATOM 22 P A A 971 50.967 55.831 110.453 1.00 40.29 P
ATOM 23 OP1 A A 971 49.790 54.925 110.533 1.00 38.19 O
ATOM 24 OP2 A A 971 51.902 55.725 109.298 1.00 39.26 O
ATOM 25 O5' A A 971 50.463 57.338 110.575 1.00 39.11 O
TER
ATOM 1 O3' C B 967 65.637 62.699 108.101 1.00 38.46 O
ATOM 2 P U B 968 64.421 61.869 107.416 1.00 40.47 P
ATOM 3 OP1 U B 968 65.012 60.888 106.463 1.00 37.50 O
ATOM 4 OP2 U B 968 63.404 62.838 106.923 1.00 41.65 O
ATOM 5 O5' U B 968 63.728 61.067 108.606 1.00 40.59 O
ATOM 6 C5' U B 968 64.339 59.901 109.184 1.00 42.09 C
ATOM 7 C4' U B 968 63.376 59.227 110.137 1.00 43.87 C
ATOM 8 O4' U B 968 62.931 60.192 111.135 1.00 44.72 O
ATOM 9 C3' U B 968 62.105 58.664 109.510 1.00 44.05 C
ATOM 10 O3' U B 968 61.694 57.533 110.261 1.00 45.01 O
ATOM 11 C2' U B 968 61.101 59.792 109.712 1.00 43.41 C
ATOM 12 O2' U B 968 59.763 59.340 109.753 1.00 41.68 O
ATOM 13 C1' U B 968 61.524 60.327 111.077 1.00 44.33 C
ATOM 14 N1 U B 968 61.184 61.742 111.285 1.00 46.25 N
ATOM 15 C2 U B 968 60.141 62.042 112.148 1.00 47.27 C
ATOM 16 O2 U B 968 59.483 61.190 112.720 1.00 46.41 O
ATOM 17 N3 U B 968 59.894 63.382 112.314 1.00 48.31 N
ATOM 18 C4 U B 968 60.563 64.432 111.715 1.00 47.84 C
ATOM 19 O4 U B 968 60.236 65.591 111.977 1.00 47.37 O
ATOM 20 C5 U B 968 61.614 64.040 110.830 1.00 48.48 C
ATOM 21 C6 U B 968 61.881 62.743 110.648 1.00 47.76 C
ATOM 22 P C B 969 61.650 56.085 109.573 1.00 47.42 P
ATOM 23 OP1 C B 969 63.040 55.571 109.515 1.00 44.91 O
ATOM 24 OP2 C B 969 60.854 56.181 108.322 1.00 47.09 O
ATOM 25 O5' C B 969 60.812 55.236 110.631 1.00 47.30 O
TER
ATOM 2 P C A 970 56.749 53.342 110.014 1.00 47.89 P
ATOM 3 OP1 C A 970 55.876 52.192 109.671 1.00 48.89 O
ATOM 4 OP2 C A 970 57.258 54.235 108.927 1.00 45.33 O
ATOM 5 O5' C A 970 55.998 54.200 111.128 1.00 44.42 O
ATOM 6 C5' C A 970 54.780 54.898 110.849 1.00 40.86 C
ATOM 7 C4' C A 970 54.218 55.475 112.124 1.00 40.83 C
ATOM 8 O4' C A 970 55.199 56.330 112.767 1.00 42.41 O
ATOM 9 C3' C A 970 53.021 56.382 111.941 1.00 41.52 C
ATOM 10 O3' C A 970 51.837 55.633 111.779 1.00 40.28 O
ATOM 11 C2' C A 970 53.036 57.208 113.218 1.00 42.35 C
ATOM 12 O2' C A 970 52.521 56.523 114.341 1.00 43.80 O
ATOM 13 C1' C A 970 54.539 57.419 113.409 1.00 43.71 C
ATOM 14 N1 C A 970 55.031 58.698 112.838 1.00 45.16 N
ATOM 15 C2 C A 970 54.509 59.910 113.331 1.00 45.55 C
ATOM 16 O2 C A 970 53.629 59.880 114.203 1.00 45.87 O
ATOM 17 N3 C A 970 54.977 61.078 112.841 1.00 46.45 N
ATOM 18 C4 C A 970 55.915 61.077 111.894 1.00 46.67 C
ATOM 19 N4 C A 970 56.352 62.259 111.448 1.00 48.87 N
ATOM 20 C5 C A 970 56.449 59.867 111.362 1.00 45.62 C
ATOM 21 C6 C A 970 55.984 58.714 111.856 1.00 45.33 C
ATOM 22 P A A 971 50.967 55.831 110.453 1.00 40.29 P
ATOM 23 OP1 A A 971 49.790 54.925 110.533 1.00 38.19 O
ATOM 24 OP2 A A 971 51.902 55.725 109.298 1.00 39.26 O
ATOM 25 O5' A A 971 50.463 57.338 110.575 1.00 39.11 O
TER
ATOM 1 O3' C B 967 65.637 62.699 108.101 1.00 38.46 O
ATOM 2 P U B 968 64.421 61.869 107.416 1.00 40.47 P
ATOM 3 OP1 U B 968 65.012 60.888 106.463 1.00 37.50 O
ATOM 4 OP2 U B 968 63.404 62.838 106.923 1.00 41.65 O
ATOM 5 O5' U B 968 63.728 61.067 108.606 1.00 40.59 O
ATOM 6 C5' U B 968 64.339 59.901 109.184 1.00 42.09 C
ATOM 7 C4' U B 968 63.376 59.227 110.137 1.00 43.87 C
ATOM 8 O4' U B 968 62.931 60.192 111.135 1.00 44.72 O
ATOM 9 C3' U B 968 62.105 58.664 109.510 1.00 44.05 C
ATOM 10 O3' U B 968 61.694 57.533 110.261 1.00 45.01 O
ATOM 11 C2' U B 968 61.101 59.792 109.712 1.00 43.41 C
ATOM 12 O2' U B 968 59.763 59.340 109.753 1.00 41.68 O
ATOM 13 C1' U B 968 61.524 60.327 111.077 1.00 44.33 C
ATOM 14 N1 U B 968 61.184 61.742 111.285 1.00 46.25 N
ATOM 15 C2 U B 968 60.141 62.042 112.148 1.00 47.27 C
ATOM 16 O2 U B 968 59.483 61.190 112.720 1.00 46.41 O
ATOM 17 N3 U B 968 59.894 63.382 112.314 1.00 48.31 N
ATOM 18 C4 U B 968 60.563 64.432 111.715 1.00 47.84 C
ATOM 19 O4 U B 968 60.236 65.591 111.977 1.00 47.37 O
ATOM 20 C5 U B 968 61.614 64.040 110.830 1.00 48.48 C
ATOM 21 C6 U B 968 61.881 62.743 110.648 1.00 47.76 C
ATOM 22 P C B 969 61.650 56.085 109.573 1.00 47.42 P
ATOM 23 OP1 C B 969 63.040 55.571 109.515 1.00 44.91 O
ATOM 24 OP2 C B 969 60.854 56.181 108.322 1.00 47.09 O
ATOM 25 O5' C B 969 60.812 55.236 110.631 1.00 47.30 O
TER
Atoms:
C2: (54.509,59.910,113.331)
OP1: (55.876,52.192,109.671)
OP2: (57.258,54.235,108.927)
C4: (55.915,61.077,111.894)
O5': (55.998,54.200,111.128)
C3': (53.021,56.382,111.941)
C1': (54.539,57.419,113.409)
O4': (55.199,56.330,112.767)
C5': (54.780,54.898,110.849)
P: (56.749,53.342,110.014)
O2: (53.629,59.880,114.203)
C4': (54.218,55.475,112.124)
C2': (53.036,57.208,113.218)
O2': (52.521,56.523,114.341)
N1: (55.031,58.698,112.838)
N3: (54.977,61.078,112.841)
N4: (56.352,62.259,111.448)
C6: (55.984,58.714,111.856)
C5: (56.449,59.867,111.362)
O3': (51.837,55.633,111.779)
OP1: (55.876,52.192,109.671)
OP2: (57.258,54.235,108.927)
C4: (55.915,61.077,111.894)
O5': (55.998,54.200,111.128)
C3': (53.021,56.382,111.941)
C1': (54.539,57.419,113.409)
O4': (55.199,56.330,112.767)
C5': (54.780,54.898,110.849)
P: (56.749,53.342,110.014)
O2: (53.629,59.880,114.203)
C4': (54.218,55.475,112.124)
C2': (53.036,57.208,113.218)
O2': (52.521,56.523,114.341)
N1: (55.031,58.698,112.838)
N3: (54.977,61.078,112.841)
N4: (56.352,62.259,111.448)
C6: (55.984,58.714,111.856)
C5: (56.449,59.867,111.362)
O3': (51.837,55.633,111.779)
C4: (60.563,64.432,111.715)
N3: (59.894,63.382,112.314)
OP1: (65.012,60.888,106.463)
OP2: (63.404,62.838,106.923)
C2: (60.141,62.042,112.148)
C1': (61.524,60.327,111.077)
C3': (62.105,58.664,109.510)
O5': (63.728,61.067,108.606)
O4': (62.931,60.192,111.135)
C5': (64.339,59.901,109.184)
P: (64.421,61.869,107.416)
C4': (63.376,59.227,110.137)
C2': (61.101,59.792,109.712)
O2': (59.763,59.340,109.753)
N1: (61.184,61.742,111.285)
O4: (60.236,65.591,111.977)
O2: (59.483,61.190,112.720)
C6: (61.881,62.743,110.648)
C5: (61.614,64.040,110.830)
O3': (61.694,57.533,110.261)
N3: (59.894,63.382,112.314)
OP1: (65.012,60.888,106.463)
OP2: (63.404,62.838,106.923)
C2: (60.141,62.042,112.148)
C1': (61.524,60.327,111.077)
C3': (62.105,58.664,109.510)
O5': (63.728,61.067,108.606)
O4': (62.931,60.192,111.135)
C5': (64.339,59.901,109.184)
P: (64.421,61.869,107.416)
C4': (63.376,59.227,110.137)
C2': (61.101,59.792,109.712)
O2': (59.763,59.340,109.753)
N1: (61.184,61.742,111.285)
O4: (60.236,65.591,111.977)
O2: (59.483,61.190,112.720)
C6: (61.881,62.743,110.648)
C5: (61.614,64.040,110.830)
O3': (61.694,57.533,110.261)
Image (generated by PyMOL):