Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0970:0968
Extra
PDB:
ATOM 1 O3' C A 969 58.110 52.742 110.581 1.00 55.27 O
ATOM 2 P C A 970 56.825 53.305 109.806 1.00 55.36 P
ATOM 3 OP1 C A 970 55.940 52.143 109.539 1.00 56.59 O
ATOM 4 OP2 C A 970 57.295 54.155 108.673 1.00 54.40 O
ATOM 5 O5' C A 970 56.106 54.209 110.903 1.00 51.33 O
ATOM 6 C5' C A 970 54.854 54.853 110.639 1.00 48.77 C
ATOM 7 C4' C A 970 54.290 55.407 111.920 1.00 48.55 C
ATOM 8 O4' C A 970 55.271 56.259 112.566 1.00 48.90 O
ATOM 9 C3' C A 970 53.075 56.296 111.777 1.00 47.37 C
ATOM 10 O3' C A 970 51.897 55.522 111.631 1.00 47.45 O
ATOM 11 C2' C A 970 53.113 57.083 113.081 1.00 48.49 C
ATOM 12 O2' C A 970 52.689 56.337 114.207 1.00 48.09 O
ATOM 13 C1' C A 970 54.613 57.325 113.232 1.00 49.11 C
ATOM 14 N1 C A 970 55.086 58.608 112.661 1.00 51.74 N
ATOM 15 C2 C A 970 54.647 59.818 113.230 1.00 51.95 C
ATOM 16 O2 C A 970 53.824 59.793 114.151 1.00 54.17 O
ATOM 17 N3 C A 970 55.127 60.983 112.754 1.00 51.82 N
ATOM 18 C4 C A 970 55.996 60.984 111.744 1.00 52.68 C
ATOM 19 N4 C A 970 56.459 62.163 111.322 1.00 54.60 N
ATOM 20 C5 C A 970 56.434 59.777 111.124 1.00 52.23 C
ATOM 21 C6 C A 970 55.957 58.625 111.607 1.00 52.28 C
ATOM 22 P A A 971 50.932 55.779 110.375 1.00 47.95 P
ATOM 23 OP1 A A 971 49.715 54.951 110.556 1.00 48.75 O
ATOM 24 OP2 A A 971 51.737 55.637 109.142 1.00 48.56 O
ATOM 25 O5' A A 971 50.504 57.300 110.533 1.00 48.31 O
TER
ATOM 1 O3' C B 967 65.676 62.594 108.060 1.00 43.61 O
ATOM 2 P U B 968 64.462 61.841 107.303 1.00 44.44 P
ATOM 3 OP1 U B 968 65.036 60.878 106.331 1.00 42.85 O
ATOM 4 OP2 U B 968 63.510 62.874 106.835 1.00 44.79 O
ATOM 5 O5' U B 968 63.707 61.012 108.431 1.00 44.76 O
ATOM 6 C5' U B 968 64.316 59.863 109.041 1.00 47.10 C
ATOM 7 C4' U B 968 63.345 59.194 109.991 1.00 47.63 C
ATOM 8 O4' U B 968 62.910 60.163 110.985 1.00 47.38 O
ATOM 9 C3' U B 968 62.072 58.622 109.375 1.00 47.41 C
ATOM 10 O3' U B 968 61.681 57.490 110.134 1.00 50.00 O
ATOM 11 C2' U B 968 61.064 59.745 109.598 1.00 46.45 C
ATOM 12 O2' U B 968 59.728 59.296 109.684 1.00 44.75 O
ATOM 13 C1' U B 968 61.505 60.280 110.954 1.00 46.15 C
ATOM 14 N1 U B 968 61.145 61.688 111.166 1.00 47.07 N
ATOM 15 C2 U B 968 60.075 61.958 111.996 1.00 48.13 C
ATOM 16 O2 U B 968 59.423 61.087 112.544 1.00 48.40 O
ATOM 17 N3 U B 968 59.791 63.291 112.159 1.00 49.13 N
ATOM 18 C4 U B 968 60.450 64.357 111.586 1.00 48.86 C
ATOM 19 O4 U B 968 60.058 65.502 111.813 1.00 48.94 O
ATOM 20 C5 U B 968 61.544 63.996 110.740 1.00 48.54 C
ATOM 21 C6 U B 968 61.846 62.707 110.563 1.00 47.32 C
ATOM 22 P C B 969 61.652 56.032 109.460 1.00 52.78 P
ATOM 23 OP1 C B 969 63.057 55.560 109.371 1.00 51.62 O
ATOM 24 OP2 C B 969 60.815 56.064 108.234 1.00 51.24 O
ATOM 25 O5' C B 969 60.860 55.183 110.552 1.00 52.14 O
TER
ATOM 2 P C A 970 56.825 53.305 109.806 1.00 55.36 P
ATOM 3 OP1 C A 970 55.940 52.143 109.539 1.00 56.59 O
ATOM 4 OP2 C A 970 57.295 54.155 108.673 1.00 54.40 O
ATOM 5 O5' C A 970 56.106 54.209 110.903 1.00 51.33 O
ATOM 6 C5' C A 970 54.854 54.853 110.639 1.00 48.77 C
ATOM 7 C4' C A 970 54.290 55.407 111.920 1.00 48.55 C
ATOM 8 O4' C A 970 55.271 56.259 112.566 1.00 48.90 O
ATOM 9 C3' C A 970 53.075 56.296 111.777 1.00 47.37 C
ATOM 10 O3' C A 970 51.897 55.522 111.631 1.00 47.45 O
ATOM 11 C2' C A 970 53.113 57.083 113.081 1.00 48.49 C
ATOM 12 O2' C A 970 52.689 56.337 114.207 1.00 48.09 O
ATOM 13 C1' C A 970 54.613 57.325 113.232 1.00 49.11 C
ATOM 14 N1 C A 970 55.086 58.608 112.661 1.00 51.74 N
ATOM 15 C2 C A 970 54.647 59.818 113.230 1.00 51.95 C
ATOM 16 O2 C A 970 53.824 59.793 114.151 1.00 54.17 O
ATOM 17 N3 C A 970 55.127 60.983 112.754 1.00 51.82 N
ATOM 18 C4 C A 970 55.996 60.984 111.744 1.00 52.68 C
ATOM 19 N4 C A 970 56.459 62.163 111.322 1.00 54.60 N
ATOM 20 C5 C A 970 56.434 59.777 111.124 1.00 52.23 C
ATOM 21 C6 C A 970 55.957 58.625 111.607 1.00 52.28 C
ATOM 22 P A A 971 50.932 55.779 110.375 1.00 47.95 P
ATOM 23 OP1 A A 971 49.715 54.951 110.556 1.00 48.75 O
ATOM 24 OP2 A A 971 51.737 55.637 109.142 1.00 48.56 O
ATOM 25 O5' A A 971 50.504 57.300 110.533 1.00 48.31 O
TER
ATOM 1 O3' C B 967 65.676 62.594 108.060 1.00 43.61 O
ATOM 2 P U B 968 64.462 61.841 107.303 1.00 44.44 P
ATOM 3 OP1 U B 968 65.036 60.878 106.331 1.00 42.85 O
ATOM 4 OP2 U B 968 63.510 62.874 106.835 1.00 44.79 O
ATOM 5 O5' U B 968 63.707 61.012 108.431 1.00 44.76 O
ATOM 6 C5' U B 968 64.316 59.863 109.041 1.00 47.10 C
ATOM 7 C4' U B 968 63.345 59.194 109.991 1.00 47.63 C
ATOM 8 O4' U B 968 62.910 60.163 110.985 1.00 47.38 O
ATOM 9 C3' U B 968 62.072 58.622 109.375 1.00 47.41 C
ATOM 10 O3' U B 968 61.681 57.490 110.134 1.00 50.00 O
ATOM 11 C2' U B 968 61.064 59.745 109.598 1.00 46.45 C
ATOM 12 O2' U B 968 59.728 59.296 109.684 1.00 44.75 O
ATOM 13 C1' U B 968 61.505 60.280 110.954 1.00 46.15 C
ATOM 14 N1 U B 968 61.145 61.688 111.166 1.00 47.07 N
ATOM 15 C2 U B 968 60.075 61.958 111.996 1.00 48.13 C
ATOM 16 O2 U B 968 59.423 61.087 112.544 1.00 48.40 O
ATOM 17 N3 U B 968 59.791 63.291 112.159 1.00 49.13 N
ATOM 18 C4 U B 968 60.450 64.357 111.586 1.00 48.86 C
ATOM 19 O4 U B 968 60.058 65.502 111.813 1.00 48.94 O
ATOM 20 C5 U B 968 61.544 63.996 110.740 1.00 48.54 C
ATOM 21 C6 U B 968 61.846 62.707 110.563 1.00 47.32 C
ATOM 22 P C B 969 61.652 56.032 109.460 1.00 52.78 P
ATOM 23 OP1 C B 969 63.057 55.560 109.371 1.00 51.62 O
ATOM 24 OP2 C B 969 60.815 56.064 108.234 1.00 51.24 O
ATOM 25 O5' C B 969 60.860 55.183 110.552 1.00 52.14 O
TER
Atoms:
C2: (54.647,59.818,113.230)
OP1: (55.940,52.143,109.539)
OP2: (57.295,54.155,108.673)
C4: (55.996,60.984,111.744)
O5': (56.106,54.209,110.903)
C3': (53.075,56.296,111.777)
C1': (54.613,57.325,113.232)
O4': (55.271,56.259,112.566)
C5': (54.854,54.853,110.639)
P: (56.825,53.305,109.806)
O2: (53.824,59.793,114.151)
C4': (54.290,55.407,111.920)
C2': (53.113,57.083,113.081)
O2': (52.689,56.337,114.207)
N1: (55.086,58.608,112.661)
N3: (55.127,60.983,112.754)
N4: (56.459,62.163,111.322)
C6: (55.957,58.625,111.607)
C5: (56.434,59.777,111.124)
O3': (51.897,55.522,111.631)
OP1: (55.940,52.143,109.539)
OP2: (57.295,54.155,108.673)
C4: (55.996,60.984,111.744)
O5': (56.106,54.209,110.903)
C3': (53.075,56.296,111.777)
C1': (54.613,57.325,113.232)
O4': (55.271,56.259,112.566)
C5': (54.854,54.853,110.639)
P: (56.825,53.305,109.806)
O2: (53.824,59.793,114.151)
C4': (54.290,55.407,111.920)
C2': (53.113,57.083,113.081)
O2': (52.689,56.337,114.207)
N1: (55.086,58.608,112.661)
N3: (55.127,60.983,112.754)
N4: (56.459,62.163,111.322)
C6: (55.957,58.625,111.607)
C5: (56.434,59.777,111.124)
O3': (51.897,55.522,111.631)
C4: (60.450,64.357,111.586)
N3: (59.791,63.291,112.159)
OP1: (65.036,60.878,106.331)
OP2: (63.510,62.874,106.835)
C2: (60.075,61.958,111.996)
C1': (61.505,60.280,110.954)
C3': (62.072,58.622,109.375)
O5': (63.707,61.012,108.431)
O4': (62.910,60.163,110.985)
C5': (64.316,59.863,109.041)
P: (64.462,61.841,107.303)
C4': (63.345,59.194,109.991)
C2': (61.064,59.745,109.598)
O2': (59.728,59.296,109.684)
N1: (61.145,61.688,111.166)
O4: (60.058,65.502,111.813)
O2: (59.423,61.087,112.544)
C6: (61.846,62.707,110.563)
C5: (61.544,63.996,110.740)
O3': (61.681,57.490,110.134)
N3: (59.791,63.291,112.159)
OP1: (65.036,60.878,106.331)
OP2: (63.510,62.874,106.835)
C2: (60.075,61.958,111.996)
C1': (61.505,60.280,110.954)
C3': (62.072,58.622,109.375)
O5': (63.707,61.012,108.431)
O4': (62.910,60.163,110.985)
C5': (64.316,59.863,109.041)
P: (64.462,61.841,107.303)
C4': (63.345,59.194,109.991)
C2': (61.064,59.745,109.598)
O2': (59.728,59.296,109.684)
N1: (61.145,61.688,111.166)
O4: (60.058,65.502,111.813)
O2: (59.423,61.087,112.544)
C6: (61.846,62.707,110.563)
C5: (61.544,63.996,110.740)
O3': (61.681,57.490,110.134)
Image (generated by PyMOL):