Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OIJ:C6:C4
Extra
PDB:
ATOM 1 O3' U A 5 19.640 -11.713 20.109 1.00 49.22 O
ATOM 2 P C A 6 18.535 -10.870 19.331 1.00 54.61 P
ATOM 3 OP1 C A 6 19.091 -9.493 19.256 1.00 53.78 O
ATOM 4 OP2 C A 6 17.221 -11.064 20.013 1.00 64.72 O
ATOM 5 O5' C A 6 18.562 -11.629 17.920 1.00 42.94 O
ATOM 6 C5' C A 6 17.769 -11.130 16.852 1.00 52.28 C
ATOM 7 C4' C A 6 17.616 -12.092 15.703 1.00 49.67 C
ATOM 8 O4' C A 6 18.898 -12.324 15.083 1.00 46.21 O
ATOM 9 C3' C A 6 17.082 -13.481 16.021 1.00 55.00 C
ATOM 10 O3' C A 6 15.666 -13.497 16.080 1.00 57.39 O
ATOM 11 C2' C A 6 17.638 -14.343 14.891 1.00 52.54 C
ATOM 12 O2' C A 6 16.794 -14.280 13.751 1.00 49.52 O
ATOM 13 C1' C A 6 18.951 -13.637 14.557 1.00 54.73 C
ATOM 14 N1 C A 6 20.157 -14.242 15.138 1.00 59.22 N
ATOM 15 C2 C A 6 21.343 -14.185 14.395 1.00 53.53 C
ATOM 16 O2 C A 6 21.333 -13.663 13.272 1.00 43.69 O
ATOM 17 N3 C A 6 22.471 -14.705 14.921 1.00 58.46 N
ATOM 18 C4 C A 6 22.439 -15.257 16.140 1.00 63.92 C
ATOM 19 N4 C A 6 23.576 -15.769 16.627 1.00 60.85 N
ATOM 20 C5 C A 6 21.240 -15.320 16.918 1.00 64.58 C
ATOM 21 C6 C A 6 20.129 -14.800 16.385 1.00 64.03 C
ATOM 22 P A A 7 14.861 -14.698 16.772 1.00 61.69 P
ATOM 23 OP1 A A 7 15.296 -14.763 18.196 1.00 74.92 O
ATOM 24 OP2 A A 7 15.008 -15.896 15.907 1.00 62.02 O
ATOM 25 O5' A A 7 13.379 -14.181 16.592 1.00 60.99 O
TER
ATOM 1 O3' C B 3 19.269 -22.393 22.157 1.00 62.78 O
ATOM 2 P U B 4 19.042 -21.047 22.984 1.00 85.69 P
ATOM 3 OP1 U B 4 20.064 -21.101 24.057 1.00 95.99 O
ATOM 4 OP2 U B 4 17.595 -20.900 23.294 1.00 78.61 O
ATOM 5 O5' U B 4 19.465 -19.956 21.924 1.00 69.46 O
ATOM 6 C5' U B 4 20.827 -19.892 21.526 1.00 61.61 C
ATOM 7 C4' U B 4 21.004 -19.013 20.319 1.00 53.69 C
ATOM 8 O4' U B 4 19.996 -19.373 19.335 1.00 59.26 O
ATOM 9 C3' U B 4 20.842 -17.515 20.579 1.00 60.79 C
ATOM 10 O3' U B 4 21.810 -16.796 19.822 1.00 58.37 O
ATOM 11 C2' U B 4 19.438 -17.207 20.064 1.00 65.39 C
ATOM 12 O2' U B 4 19.214 -15.878 19.627 1.00 59.02 O
ATOM 13 C1' U B 4 19.288 -18.218 18.930 1.00 61.44 C
ATOM 14 N1 U B 4 17.854 -18.493 18.785 1.00 60.46 N
ATOM 15 C2 U B 4 17.261 -18.064 17.620 1.00 60.34 C
ATOM 16 O2 U B 4 17.897 -17.516 16.735 1.00 61.54 O
ATOM 17 N3 U B 4 15.914 -18.304 17.532 1.00 53.16 N
ATOM 18 C4 U B 4 15.136 -18.911 18.492 1.00 64.59 C
ATOM 19 O4 U B 4 13.931 -19.066 18.279 1.00 78.14 O
ATOM 20 C5 U B 4 15.834 -19.321 19.675 1.00 65.86 C
ATOM 21 C6 U B 4 17.142 -19.096 19.787 1.00 60.97 C
ATOM 22 P U B 5 23.076 -16.195 20.591 1.00 55.33 P
ATOM 23 OP1 U B 5 24.120 -15.859 19.589 1.00 45.01 O
ATOM 24 OP2 U B 5 23.403 -17.081 21.755 1.00 57.73 O
ATOM 25 O5' U B 5 22.385 -14.861 21.056 1.00 69.65 O
TER
ATOM 2 P C A 6 18.535 -10.870 19.331 1.00 54.61 P
ATOM 3 OP1 C A 6 19.091 -9.493 19.256 1.00 53.78 O
ATOM 4 OP2 C A 6 17.221 -11.064 20.013 1.00 64.72 O
ATOM 5 O5' C A 6 18.562 -11.629 17.920 1.00 42.94 O
ATOM 6 C5' C A 6 17.769 -11.130 16.852 1.00 52.28 C
ATOM 7 C4' C A 6 17.616 -12.092 15.703 1.00 49.67 C
ATOM 8 O4' C A 6 18.898 -12.324 15.083 1.00 46.21 O
ATOM 9 C3' C A 6 17.082 -13.481 16.021 1.00 55.00 C
ATOM 10 O3' C A 6 15.666 -13.497 16.080 1.00 57.39 O
ATOM 11 C2' C A 6 17.638 -14.343 14.891 1.00 52.54 C
ATOM 12 O2' C A 6 16.794 -14.280 13.751 1.00 49.52 O
ATOM 13 C1' C A 6 18.951 -13.637 14.557 1.00 54.73 C
ATOM 14 N1 C A 6 20.157 -14.242 15.138 1.00 59.22 N
ATOM 15 C2 C A 6 21.343 -14.185 14.395 1.00 53.53 C
ATOM 16 O2 C A 6 21.333 -13.663 13.272 1.00 43.69 O
ATOM 17 N3 C A 6 22.471 -14.705 14.921 1.00 58.46 N
ATOM 18 C4 C A 6 22.439 -15.257 16.140 1.00 63.92 C
ATOM 19 N4 C A 6 23.576 -15.769 16.627 1.00 60.85 N
ATOM 20 C5 C A 6 21.240 -15.320 16.918 1.00 64.58 C
ATOM 21 C6 C A 6 20.129 -14.800 16.385 1.00 64.03 C
ATOM 22 P A A 7 14.861 -14.698 16.772 1.00 61.69 P
ATOM 23 OP1 A A 7 15.296 -14.763 18.196 1.00 74.92 O
ATOM 24 OP2 A A 7 15.008 -15.896 15.907 1.00 62.02 O
ATOM 25 O5' A A 7 13.379 -14.181 16.592 1.00 60.99 O
TER
ATOM 1 O3' C B 3 19.269 -22.393 22.157 1.00 62.78 O
ATOM 2 P U B 4 19.042 -21.047 22.984 1.00 85.69 P
ATOM 3 OP1 U B 4 20.064 -21.101 24.057 1.00 95.99 O
ATOM 4 OP2 U B 4 17.595 -20.900 23.294 1.00 78.61 O
ATOM 5 O5' U B 4 19.465 -19.956 21.924 1.00 69.46 O
ATOM 6 C5' U B 4 20.827 -19.892 21.526 1.00 61.61 C
ATOM 7 C4' U B 4 21.004 -19.013 20.319 1.00 53.69 C
ATOM 8 O4' U B 4 19.996 -19.373 19.335 1.00 59.26 O
ATOM 9 C3' U B 4 20.842 -17.515 20.579 1.00 60.79 C
ATOM 10 O3' U B 4 21.810 -16.796 19.822 1.00 58.37 O
ATOM 11 C2' U B 4 19.438 -17.207 20.064 1.00 65.39 C
ATOM 12 O2' U B 4 19.214 -15.878 19.627 1.00 59.02 O
ATOM 13 C1' U B 4 19.288 -18.218 18.930 1.00 61.44 C
ATOM 14 N1 U B 4 17.854 -18.493 18.785 1.00 60.46 N
ATOM 15 C2 U B 4 17.261 -18.064 17.620 1.00 60.34 C
ATOM 16 O2 U B 4 17.897 -17.516 16.735 1.00 61.54 O
ATOM 17 N3 U B 4 15.914 -18.304 17.532 1.00 53.16 N
ATOM 18 C4 U B 4 15.136 -18.911 18.492 1.00 64.59 C
ATOM 19 O4 U B 4 13.931 -19.066 18.279 1.00 78.14 O
ATOM 20 C5 U B 4 15.834 -19.321 19.675 1.00 65.86 C
ATOM 21 C6 U B 4 17.142 -19.096 19.787 1.00 60.97 C
ATOM 22 P U B 5 23.076 -16.195 20.591 1.00 55.33 P
ATOM 23 OP1 U B 5 24.120 -15.859 19.589 1.00 45.01 O
ATOM 24 OP2 U B 5 23.403 -17.081 21.755 1.00 57.73 O
ATOM 25 O5' U B 5 22.385 -14.861 21.056 1.00 69.65 O
TER
Atoms:
C2: (21.343,-14.185,14.395)
OP1: (19.091,-9.493,19.256)
OP2: (17.221,-11.064,20.013)
C4: (22.439,-15.257,16.140)
O5': (18.562,-11.629,17.920)
C3': (17.082,-13.481,16.021)
C1': (18.951,-13.637,14.557)
O4': (18.898,-12.324,15.083)
C5': (17.769,-11.130,16.852)
P: (18.535,-10.870,19.331)
O2: (21.333,-13.663,13.272)
C4': (17.616,-12.092,15.703)
C2': (17.638,-14.343,14.891)
O2': (16.794,-14.280,13.751)
N1: (20.157,-14.242,15.138)
N3: (22.471,-14.705,14.921)
N4: (23.576,-15.769,16.627)
C6: (20.129,-14.800,16.385)
C5: (21.240,-15.320,16.918)
O3': (15.666,-13.497,16.080)
OP1: (19.091,-9.493,19.256)
OP2: (17.221,-11.064,20.013)
C4: (22.439,-15.257,16.140)
O5': (18.562,-11.629,17.920)
C3': (17.082,-13.481,16.021)
C1': (18.951,-13.637,14.557)
O4': (18.898,-12.324,15.083)
C5': (17.769,-11.130,16.852)
P: (18.535,-10.870,19.331)
O2: (21.333,-13.663,13.272)
C4': (17.616,-12.092,15.703)
C2': (17.638,-14.343,14.891)
O2': (16.794,-14.280,13.751)
N1: (20.157,-14.242,15.138)
N3: (22.471,-14.705,14.921)
N4: (23.576,-15.769,16.627)
C6: (20.129,-14.800,16.385)
C5: (21.240,-15.320,16.918)
O3': (15.666,-13.497,16.080)
C4: (15.136,-18.911,18.492)
N3: (15.914,-18.304,17.532)
OP1: (20.064,-21.101,24.057)
OP2: (17.595,-20.900,23.294)
C2: (17.261,-18.064,17.620)
C1': (19.288,-18.218,18.930)
C3': (20.842,-17.515,20.579)
O5': (19.465,-19.956,21.924)
O4': (19.996,-19.373,19.335)
C5': (20.827,-19.892,21.526)
P: (19.042,-21.047,22.984)
C4': (21.004,-19.013,20.319)
C2': (19.438,-17.207,20.064)
O2': (19.214,-15.878,19.627)
N1: (17.854,-18.493,18.785)
O4: (13.931,-19.066,18.279)
O2: (17.897,-17.516,16.735)
C6: (17.142,-19.096,19.787)
C5: (15.834,-19.321,19.675)
O3': (21.810,-16.796,19.822)
N3: (15.914,-18.304,17.532)
OP1: (20.064,-21.101,24.057)
OP2: (17.595,-20.900,23.294)
C2: (17.261,-18.064,17.620)
C1': (19.288,-18.218,18.930)
C3': (20.842,-17.515,20.579)
O5': (19.465,-19.956,21.924)
O4': (19.996,-19.373,19.335)
C5': (20.827,-19.892,21.526)
P: (19.042,-21.047,22.984)
C4': (21.004,-19.013,20.319)
C2': (19.438,-17.207,20.064)
O2': (19.214,-15.878,19.627)
N1: (17.854,-18.493,18.785)
O4: (13.931,-19.066,18.279)
O2: (17.897,-17.516,16.735)
C6: (17.142,-19.096,19.787)
C5: (15.834,-19.321,19.675)
O3': (21.810,-16.796,19.822)
Image (generated by PyMOL):