Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OIJ:D6:D4
Extra
PDB:
ATOM 1 O3' U A 5 37.748 0.518 2.310 1.00 50.15 O
ATOM 2 P C A 6 38.845 0.230 3.424 1.00 59.44 P
ATOM 3 OP1 C A 6 38.280 0.705 4.714 1.00 63.45 O
ATOM 4 OP2 C A 6 40.139 0.782 2.947 1.00 58.14 O
ATOM 5 O5' C A 6 38.874 -1.358 3.299 1.00 46.30 O
ATOM 6 C5' C A 6 39.704 -2.147 4.133 1.00 44.23 C
ATOM 7 C4' C A 6 39.867 -3.543 3.603 1.00 42.61 C
ATOM 8 O4' C A 6 38.608 -4.256 3.585 1.00 46.26 O
ATOM 9 C3' C A 6 40.349 -3.648 2.177 1.00 48.40 C
ATOM 10 O3' C A 6 41.734 -3.364 2.111 1.00 56.44 O
ATOM 11 C2' C A 6 39.935 -5.074 1.811 1.00 52.46 C
ATOM 12 O2' C A 6 40.783 -6.046 2.409 1.00 54.97 O
ATOM 13 C1' C A 6 38.595 -5.190 2.526 1.00 53.57 C
ATOM 14 N1 C A 6 37.396 -4.903 1.724 1.00 63.30 N
ATOM 15 C2 C A 6 36.229 -5.591 2.057 1.00 69.66 C
ATOM 16 O2 C A 6 36.264 -6.414 2.978 1.00 69.67 O
ATOM 17 N3 C A 6 35.093 -5.348 1.372 1.00 75.39 N
ATOM 18 C4 C A 6 35.093 -4.452 0.385 1.00 69.48 C
ATOM 19 N4 C A 6 33.941 -4.243 -0.260 1.00 60.06 N
ATOM 20 C5 C A 6 36.274 -3.735 0.025 1.00 66.57 C
ATOM 21 C6 C A 6 37.395 -3.984 0.714 1.00 62.83 C
ATOM 22 P A A 7 42.630 -3.514 0.793 1.00 67.56 P
ATOM 23 OP1 A A 7 42.460 -2.301 -0.043 1.00 76.57 O
ATOM 24 OP2 A A 7 42.350 -4.849 0.221 1.00 56.46 O
ATOM 25 O5' A A 7 44.068 -3.531 1.456 1.00 50.76 O
TER
ATOM 1 O3' C B 3 38.531 -1.689 -8.382 1.00 65.93 O
ATOM 2 P U B 4 38.629 -0.348 -7.480 1.00 74.16 P
ATOM 3 OP1 U B 4 37.707 0.630 -8.105 1.00 71.19 O
ATOM 4 OP2 U B 4 40.070 -0.046 -7.295 1.00 73.11 O
ATOM 5 O5' U B 4 38.009 -0.767 -6.087 1.00 61.62 O
ATOM 6 C5' U B 4 36.759 -1.440 -6.051 1.00 60.86 C
ATOM 7 C4' U B 4 36.573 -2.204 -4.766 1.00 62.69 C
ATOM 8 O4' U B 4 37.588 -3.248 -4.647 1.00 67.44 O
ATOM 9 C3' U B 4 36.661 -1.352 -3.504 1.00 52.50 C
ATOM 10 O3' U B 4 35.686 -1.806 -2.572 1.00 54.78 O
ATOM 11 C2' U B 4 38.067 -1.660 -2.999 1.00 59.67 C
ATOM 12 O2' U B 4 38.322 -1.421 -1.626 1.00 54.81 O
ATOM 13 C1' U B 4 38.233 -3.128 -3.395 1.00 65.71 C
ATOM 14 N1 U B 4 39.688 -3.380 -3.448 1.00 64.34 N
ATOM 15 C2 U B 4 40.222 -4.277 -2.539 1.00 59.29 C
ATOM 16 O2 U B 4 39.567 -4.918 -1.735 1.00 54.72 O
ATOM 17 N3 U B 4 41.575 -4.419 -2.624 1.00 57.20 N
ATOM 18 C4 U B 4 42.432 -3.775 -3.490 1.00 55.65 C
ATOM 19 O4 U B 4 43.634 -4.037 -3.421 1.00 56.64 O
ATOM 20 C5 U B 4 41.807 -2.858 -4.393 1.00 55.20 C
ATOM 21 C6 U B 4 40.487 -2.691 -4.333 1.00 60.17 C
ATOM 22 P U B 5 34.450 -0.863 -2.172 1.00 67.89 P
ATOM 23 OP1 U B 5 33.440 -1.721 -1.514 1.00 58.47 O
ATOM 24 OP2 U B 5 34.067 -0.085 -3.378 1.00 80.58 O
ATOM 25 O5' U B 5 35.150 0.072 -1.096 1.00 65.73 O
TER
ATOM 2 P C A 6 38.845 0.230 3.424 1.00 59.44 P
ATOM 3 OP1 C A 6 38.280 0.705 4.714 1.00 63.45 O
ATOM 4 OP2 C A 6 40.139 0.782 2.947 1.00 58.14 O
ATOM 5 O5' C A 6 38.874 -1.358 3.299 1.00 46.30 O
ATOM 6 C5' C A 6 39.704 -2.147 4.133 1.00 44.23 C
ATOM 7 C4' C A 6 39.867 -3.543 3.603 1.00 42.61 C
ATOM 8 O4' C A 6 38.608 -4.256 3.585 1.00 46.26 O
ATOM 9 C3' C A 6 40.349 -3.648 2.177 1.00 48.40 C
ATOM 10 O3' C A 6 41.734 -3.364 2.111 1.00 56.44 O
ATOM 11 C2' C A 6 39.935 -5.074 1.811 1.00 52.46 C
ATOM 12 O2' C A 6 40.783 -6.046 2.409 1.00 54.97 O
ATOM 13 C1' C A 6 38.595 -5.190 2.526 1.00 53.57 C
ATOM 14 N1 C A 6 37.396 -4.903 1.724 1.00 63.30 N
ATOM 15 C2 C A 6 36.229 -5.591 2.057 1.00 69.66 C
ATOM 16 O2 C A 6 36.264 -6.414 2.978 1.00 69.67 O
ATOM 17 N3 C A 6 35.093 -5.348 1.372 1.00 75.39 N
ATOM 18 C4 C A 6 35.093 -4.452 0.385 1.00 69.48 C
ATOM 19 N4 C A 6 33.941 -4.243 -0.260 1.00 60.06 N
ATOM 20 C5 C A 6 36.274 -3.735 0.025 1.00 66.57 C
ATOM 21 C6 C A 6 37.395 -3.984 0.714 1.00 62.83 C
ATOM 22 P A A 7 42.630 -3.514 0.793 1.00 67.56 P
ATOM 23 OP1 A A 7 42.460 -2.301 -0.043 1.00 76.57 O
ATOM 24 OP2 A A 7 42.350 -4.849 0.221 1.00 56.46 O
ATOM 25 O5' A A 7 44.068 -3.531 1.456 1.00 50.76 O
TER
ATOM 1 O3' C B 3 38.531 -1.689 -8.382 1.00 65.93 O
ATOM 2 P U B 4 38.629 -0.348 -7.480 1.00 74.16 P
ATOM 3 OP1 U B 4 37.707 0.630 -8.105 1.00 71.19 O
ATOM 4 OP2 U B 4 40.070 -0.046 -7.295 1.00 73.11 O
ATOM 5 O5' U B 4 38.009 -0.767 -6.087 1.00 61.62 O
ATOM 6 C5' U B 4 36.759 -1.440 -6.051 1.00 60.86 C
ATOM 7 C4' U B 4 36.573 -2.204 -4.766 1.00 62.69 C
ATOM 8 O4' U B 4 37.588 -3.248 -4.647 1.00 67.44 O
ATOM 9 C3' U B 4 36.661 -1.352 -3.504 1.00 52.50 C
ATOM 10 O3' U B 4 35.686 -1.806 -2.572 1.00 54.78 O
ATOM 11 C2' U B 4 38.067 -1.660 -2.999 1.00 59.67 C
ATOM 12 O2' U B 4 38.322 -1.421 -1.626 1.00 54.81 O
ATOM 13 C1' U B 4 38.233 -3.128 -3.395 1.00 65.71 C
ATOM 14 N1 U B 4 39.688 -3.380 -3.448 1.00 64.34 N
ATOM 15 C2 U B 4 40.222 -4.277 -2.539 1.00 59.29 C
ATOM 16 O2 U B 4 39.567 -4.918 -1.735 1.00 54.72 O
ATOM 17 N3 U B 4 41.575 -4.419 -2.624 1.00 57.20 N
ATOM 18 C4 U B 4 42.432 -3.775 -3.490 1.00 55.65 C
ATOM 19 O4 U B 4 43.634 -4.037 -3.421 1.00 56.64 O
ATOM 20 C5 U B 4 41.807 -2.858 -4.393 1.00 55.20 C
ATOM 21 C6 U B 4 40.487 -2.691 -4.333 1.00 60.17 C
ATOM 22 P U B 5 34.450 -0.863 -2.172 1.00 67.89 P
ATOM 23 OP1 U B 5 33.440 -1.721 -1.514 1.00 58.47 O
ATOM 24 OP2 U B 5 34.067 -0.085 -3.378 1.00 80.58 O
ATOM 25 O5' U B 5 35.150 0.072 -1.096 1.00 65.73 O
TER
Atoms:
C2: (36.229,-5.591,2.057)
OP1: (38.280,0.705,4.714)
OP2: (40.139,0.782,2.947)
C4: (35.093,-4.452,0.385)
O5': (38.874,-1.358,3.299)
C3': (40.349,-3.648,2.177)
C1': (38.595,-5.190,2.526)
O4': (38.608,-4.256,3.585)
C5': (39.704,-2.147,4.133)
P: (38.845,0.230,3.424)
O2: (36.264,-6.414,2.978)
C4': (39.867,-3.543,3.603)
C2': (39.935,-5.074,1.811)
O2': (40.783,-6.046,2.409)
N1: (37.396,-4.903,1.724)
N3: (35.093,-5.348,1.372)
N4: (33.941,-4.243,-0.260)
C6: (37.395,-3.984,0.714)
C5: (36.274,-3.735,0.025)
O3': (41.734,-3.364,2.111)
OP1: (38.280,0.705,4.714)
OP2: (40.139,0.782,2.947)
C4: (35.093,-4.452,0.385)
O5': (38.874,-1.358,3.299)
C3': (40.349,-3.648,2.177)
C1': (38.595,-5.190,2.526)
O4': (38.608,-4.256,3.585)
C5': (39.704,-2.147,4.133)
P: (38.845,0.230,3.424)
O2: (36.264,-6.414,2.978)
C4': (39.867,-3.543,3.603)
C2': (39.935,-5.074,1.811)
O2': (40.783,-6.046,2.409)
N1: (37.396,-4.903,1.724)
N3: (35.093,-5.348,1.372)
N4: (33.941,-4.243,-0.260)
C6: (37.395,-3.984,0.714)
C5: (36.274,-3.735,0.025)
O3': (41.734,-3.364,2.111)
C4: (42.432,-3.775,-3.490)
N3: (41.575,-4.419,-2.624)
OP1: (37.707,0.630,-8.105)
OP2: (40.070,-0.046,-7.295)
C2: (40.222,-4.277,-2.539)
C1': (38.233,-3.128,-3.395)
C3': (36.661,-1.352,-3.504)
O5': (38.009,-0.767,-6.087)
O4': (37.588,-3.248,-4.647)
C5': (36.759,-1.440,-6.051)
P: (38.629,-0.348,-7.480)
C4': (36.573,-2.204,-4.766)
C2': (38.067,-1.660,-2.999)
O2': (38.322,-1.421,-1.626)
N1: (39.688,-3.380,-3.448)
O4: (43.634,-4.037,-3.421)
O2: (39.567,-4.918,-1.735)
C6: (40.487,-2.691,-4.333)
C5: (41.807,-2.858,-4.393)
O3': (35.686,-1.806,-2.572)
N3: (41.575,-4.419,-2.624)
OP1: (37.707,0.630,-8.105)
OP2: (40.070,-0.046,-7.295)
C2: (40.222,-4.277,-2.539)
C1': (38.233,-3.128,-3.395)
C3': (36.661,-1.352,-3.504)
O5': (38.009,-0.767,-6.087)
O4': (37.588,-3.248,-4.647)
C5': (36.759,-1.440,-6.051)
P: (38.629,-0.348,-7.480)
C4': (36.573,-2.204,-4.766)
C2': (38.067,-1.660,-2.999)
O2': (38.322,-1.421,-1.626)
N1: (39.688,-3.380,-3.448)
O4: (43.634,-4.037,-3.421)
O2: (39.567,-4.918,-1.735)
C6: (40.487,-2.691,-4.333)
C5: (41.807,-2.858,-4.393)
O3': (35.686,-1.806,-2.572)
Image (generated by PyMOL):