Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:X116:X114
Extra
PDB:
ATOM 1 O3' G A 115 -9.767 -29.002 15.659 1.00 48.16 O
ATOM 2 P C A 116 -9.875 -27.439 15.302 1.00 50.59 P
ATOM 3 OP1 C A 116 -8.483 -26.956 15.490 1.00 58.28 O
ATOM 4 OP2 C A 116 -10.975 -26.869 16.121 1.00 49.99 O
ATOM 5 O5' C A 116 -10.332 -27.360 13.778 1.00 49.06 O
ATOM 6 C5' C A 116 -9.535 -27.852 12.713 1.00 52.53 C
ATOM 7 C4' C A 116 -10.233 -27.722 11.381 1.00 53.32 C
ATOM 8 O4' C A 116 -11.474 -28.483 11.367 1.00 51.04 O
ATOM 9 C3' C A 116 -10.676 -26.324 10.979 1.00 53.42 C
ATOM 10 O3' C A 116 -9.613 -25.510 10.516 1.00 59.25 O
ATOM 11 C2' C A 116 -11.716 -26.625 9.909 1.00 54.65 C
ATOM 12 O2' C A 116 -11.084 -26.988 8.688 1.00 57.95 O
ATOM 13 C1' C A 116 -12.399 -27.862 10.498 1.00 48.08 C
ATOM 14 N1 C A 116 -13.619 -27.437 11.213 1.00 49.25 N
ATOM 15 C2 C A 116 -14.775 -27.236 10.458 1.00 49.13 C
ATOM 16 O2 C A 116 -14.728 -27.444 9.238 1.00 49.63 O
ATOM 17 N3 C A 116 -15.908 -26.825 11.068 1.00 48.17 N
ATOM 18 C4 C A 116 -15.907 -26.612 12.381 1.00 44.02 C
ATOM 19 N4 C A 116 -17.047 -26.212 12.938 1.00 42.82 N
ATOM 20 C5 C A 116 -14.744 -26.801 13.179 1.00 45.42 C
ATOM 21 C6 C A 116 -13.627 -27.207 12.561 1.00 50.01 C
ATOM 22 P U A 117 -9.742 -23.909 10.587 1.00 59.32 P
ATOM 23 OP1 U A 117 -8.442 -23.359 10.115 1.00 64.28 O
ATOM 24 OP2 U A 117 -10.203 -23.611 11.966 1.00 55.95 O
ATOM 25 O5' U A 117 -10.881 -23.561 9.536 1.00 57.44 O
TER
ATOM 1 O3' A B 113 -13.676 -22.259 21.880 1.00 27.32 O
ATOM 2 P U B 114 -13.311 -23.614 22.677 1.00 33.00 P
ATOM 3 OP1 U B 114 -13.972 -23.573 24.003 1.00 31.81 O
ATOM 4 OP2 U B 114 -11.832 -23.814 22.590 1.00 30.87 O
ATOM 5 O5' U B 114 -14.052 -24.695 21.758 1.00 32.23 O
ATOM 6 C5' U B 114 -13.348 -25.447 20.772 1.00 32.04 C
ATOM 7 C4' U B 114 -14.304 -26.276 19.948 1.00 30.20 C
ATOM 8 O4' U B 114 -15.216 -25.393 19.236 1.00 32.15 O
ATOM 9 C3' U B 114 -13.664 -27.164 18.886 1.00 36.02 C
ATOM 10 O3' U B 114 -14.426 -28.366 18.759 1.00 32.13 O
ATOM 11 C2' U B 114 -13.828 -26.338 17.614 1.00 38.06 C
ATOM 12 O2' U B 114 -13.821 -27.083 16.415 1.00 40.67 O
ATOM 13 C1' U B 114 -15.181 -25.680 17.852 1.00 35.74 C
ATOM 14 N1 U B 114 -15.302 -24.447 17.044 1.00 39.32 N
ATOM 15 C2 U B 114 -16.189 -24.433 15.974 1.00 43.10 C
ATOM 16 O2 U B 114 -16.893 -25.378 15.671 1.00 39.89 O
ATOM 17 N3 U B 114 -16.228 -23.259 15.262 1.00 46.30 N
ATOM 18 C4 U B 114 -15.477 -22.122 15.494 1.00 49.03 C
ATOM 19 O4 U B 114 -15.623 -21.138 14.761 1.00 54.07 O
ATOM 20 C5 U B 114 -14.577 -22.215 16.605 1.00 47.44 C
ATOM 21 C6 U B 114 -14.521 -23.346 17.321 1.00 44.07 C
ATOM 22 P G B 115 -13.711 -29.782 18.953 1.00 37.96 P
ATOM 23 OP1 G B 115 -14.752 -30.798 18.628 1.00 38.55 O
ATOM 24 OP2 G B 115 -13.037 -29.813 20.283 1.00 29.28 O
ATOM 25 O5' G B 115 -12.612 -29.714 17.809 1.00 41.09 O
TER
ATOM 2 P C A 116 -9.875 -27.439 15.302 1.00 50.59 P
ATOM 3 OP1 C A 116 -8.483 -26.956 15.490 1.00 58.28 O
ATOM 4 OP2 C A 116 -10.975 -26.869 16.121 1.00 49.99 O
ATOM 5 O5' C A 116 -10.332 -27.360 13.778 1.00 49.06 O
ATOM 6 C5' C A 116 -9.535 -27.852 12.713 1.00 52.53 C
ATOM 7 C4' C A 116 -10.233 -27.722 11.381 1.00 53.32 C
ATOM 8 O4' C A 116 -11.474 -28.483 11.367 1.00 51.04 O
ATOM 9 C3' C A 116 -10.676 -26.324 10.979 1.00 53.42 C
ATOM 10 O3' C A 116 -9.613 -25.510 10.516 1.00 59.25 O
ATOM 11 C2' C A 116 -11.716 -26.625 9.909 1.00 54.65 C
ATOM 12 O2' C A 116 -11.084 -26.988 8.688 1.00 57.95 O
ATOM 13 C1' C A 116 -12.399 -27.862 10.498 1.00 48.08 C
ATOM 14 N1 C A 116 -13.619 -27.437 11.213 1.00 49.25 N
ATOM 15 C2 C A 116 -14.775 -27.236 10.458 1.00 49.13 C
ATOM 16 O2 C A 116 -14.728 -27.444 9.238 1.00 49.63 O
ATOM 17 N3 C A 116 -15.908 -26.825 11.068 1.00 48.17 N
ATOM 18 C4 C A 116 -15.907 -26.612 12.381 1.00 44.02 C
ATOM 19 N4 C A 116 -17.047 -26.212 12.938 1.00 42.82 N
ATOM 20 C5 C A 116 -14.744 -26.801 13.179 1.00 45.42 C
ATOM 21 C6 C A 116 -13.627 -27.207 12.561 1.00 50.01 C
ATOM 22 P U A 117 -9.742 -23.909 10.587 1.00 59.32 P
ATOM 23 OP1 U A 117 -8.442 -23.359 10.115 1.00 64.28 O
ATOM 24 OP2 U A 117 -10.203 -23.611 11.966 1.00 55.95 O
ATOM 25 O5' U A 117 -10.881 -23.561 9.536 1.00 57.44 O
TER
ATOM 1 O3' A B 113 -13.676 -22.259 21.880 1.00 27.32 O
ATOM 2 P U B 114 -13.311 -23.614 22.677 1.00 33.00 P
ATOM 3 OP1 U B 114 -13.972 -23.573 24.003 1.00 31.81 O
ATOM 4 OP2 U B 114 -11.832 -23.814 22.590 1.00 30.87 O
ATOM 5 O5' U B 114 -14.052 -24.695 21.758 1.00 32.23 O
ATOM 6 C5' U B 114 -13.348 -25.447 20.772 1.00 32.04 C
ATOM 7 C4' U B 114 -14.304 -26.276 19.948 1.00 30.20 C
ATOM 8 O4' U B 114 -15.216 -25.393 19.236 1.00 32.15 O
ATOM 9 C3' U B 114 -13.664 -27.164 18.886 1.00 36.02 C
ATOM 10 O3' U B 114 -14.426 -28.366 18.759 1.00 32.13 O
ATOM 11 C2' U B 114 -13.828 -26.338 17.614 1.00 38.06 C
ATOM 12 O2' U B 114 -13.821 -27.083 16.415 1.00 40.67 O
ATOM 13 C1' U B 114 -15.181 -25.680 17.852 1.00 35.74 C
ATOM 14 N1 U B 114 -15.302 -24.447 17.044 1.00 39.32 N
ATOM 15 C2 U B 114 -16.189 -24.433 15.974 1.00 43.10 C
ATOM 16 O2 U B 114 -16.893 -25.378 15.671 1.00 39.89 O
ATOM 17 N3 U B 114 -16.228 -23.259 15.262 1.00 46.30 N
ATOM 18 C4 U B 114 -15.477 -22.122 15.494 1.00 49.03 C
ATOM 19 O4 U B 114 -15.623 -21.138 14.761 1.00 54.07 O
ATOM 20 C5 U B 114 -14.577 -22.215 16.605 1.00 47.44 C
ATOM 21 C6 U B 114 -14.521 -23.346 17.321 1.00 44.07 C
ATOM 22 P G B 115 -13.711 -29.782 18.953 1.00 37.96 P
ATOM 23 OP1 G B 115 -14.752 -30.798 18.628 1.00 38.55 O
ATOM 24 OP2 G B 115 -13.037 -29.813 20.283 1.00 29.28 O
ATOM 25 O5' G B 115 -12.612 -29.714 17.809 1.00 41.09 O
TER
Atoms:
C2: (-14.775,-27.236,10.458)
OP1: (-8.483,-26.956,15.490)
OP2: (-10.975,-26.869,16.121)
C4: (-15.907,-26.612,12.381)
O5': (-10.332,-27.360,13.778)
C3': (-10.676,-26.324,10.979)
C1': (-12.399,-27.862,10.498)
O4': (-11.474,-28.483,11.367)
C5': (-9.535,-27.852,12.713)
P: (-9.875,-27.439,15.302)
O2: (-14.728,-27.444,9.238)
C4': (-10.233,-27.722,11.381)
C2': (-11.716,-26.625,9.909)
O2': (-11.084,-26.988,8.688)
N1: (-13.619,-27.437,11.213)
N3: (-15.908,-26.825,11.068)
N4: (-17.047,-26.212,12.938)
C6: (-13.627,-27.207,12.561)
C5: (-14.744,-26.801,13.179)
O3': (-9.613,-25.510,10.516)
OP1: (-8.483,-26.956,15.490)
OP2: (-10.975,-26.869,16.121)
C4: (-15.907,-26.612,12.381)
O5': (-10.332,-27.360,13.778)
C3': (-10.676,-26.324,10.979)
C1': (-12.399,-27.862,10.498)
O4': (-11.474,-28.483,11.367)
C5': (-9.535,-27.852,12.713)
P: (-9.875,-27.439,15.302)
O2: (-14.728,-27.444,9.238)
C4': (-10.233,-27.722,11.381)
C2': (-11.716,-26.625,9.909)
O2': (-11.084,-26.988,8.688)
N1: (-13.619,-27.437,11.213)
N3: (-15.908,-26.825,11.068)
N4: (-17.047,-26.212,12.938)
C6: (-13.627,-27.207,12.561)
C5: (-14.744,-26.801,13.179)
O3': (-9.613,-25.510,10.516)
C4: (-15.477,-22.122,15.494)
N3: (-16.228,-23.259,15.262)
OP1: (-13.972,-23.573,24.003)
OP2: (-11.832,-23.814,22.590)
C2: (-16.189,-24.433,15.974)
C1': (-15.181,-25.680,17.852)
C3': (-13.664,-27.164,18.886)
O5': (-14.052,-24.695,21.758)
O4': (-15.216,-25.393,19.236)
C5': (-13.348,-25.447,20.772)
P: (-13.311,-23.614,22.677)
C4': (-14.304,-26.276,19.948)
C2': (-13.828,-26.338,17.614)
O2': (-13.821,-27.083,16.415)
N1: (-15.302,-24.447,17.044)
O4: (-15.623,-21.138,14.761)
O2: (-16.893,-25.378,15.671)
C6: (-14.521,-23.346,17.321)
C5: (-14.577,-22.215,16.605)
O3': (-14.426,-28.366,18.759)
N3: (-16.228,-23.259,15.262)
OP1: (-13.972,-23.573,24.003)
OP2: (-11.832,-23.814,22.590)
C2: (-16.189,-24.433,15.974)
C1': (-15.181,-25.680,17.852)
C3': (-13.664,-27.164,18.886)
O5': (-14.052,-24.695,21.758)
O4': (-15.216,-25.393,19.236)
C5': (-13.348,-25.447,20.772)
P: (-13.311,-23.614,22.677)
C4': (-14.304,-26.276,19.948)
C2': (-13.828,-26.338,17.614)
O2': (-13.821,-27.083,16.415)
N1: (-15.302,-24.447,17.044)
O4: (-15.623,-21.138,14.761)
O2: (-16.893,-25.378,15.671)
C6: (-14.521,-23.346,17.321)
C5: (-14.577,-22.215,16.605)
O3': (-14.426,-28.366,18.759)
Image (generated by PyMOL):