Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12619:12618
Extra
PDB:
ATOM 1 O3' U A2618 33.859 -9.376 52.179 1.00 46.40 O
ATOM 2 P C A2619 35.327 -9.780 52.679 1.00 38.78 P
ATOM 3 OP1 C A2619 35.308 -11.233 52.974 1.00 38.78 O
ATOM 4 OP2 C A2619 35.702 -8.792 53.767 1.00 38.67 O
ATOM 5 O5' C A2619 36.269 -9.544 51.426 1.00 38.86 O
ATOM 6 C5' C A2619 35.981 -8.580 50.486 1.00 38.95 C
ATOM 7 C4' C A2619 37.023 -7.520 50.381 1.00 38.93 C
ATOM 8 O4' C A2619 36.629 -6.713 49.262 1.00 39.06 O
ATOM 9 C3' C A2619 37.112 -6.552 51.566 1.00 38.82 C
ATOM 10 O3' C A2619 38.257 -6.762 52.378 1.00 38.70 O
ATOM 11 C2' C A2619 37.077 -5.170 50.936 1.00 38.90 C
ATOM 12 O2' C A2619 38.377 -4.738 50.575 1.00 38.89 O
ATOM 13 C1' C A2619 36.304 -5.427 49.664 1.00 39.05 C
ATOM 14 N1 C A2619 34.825 -5.330 49.874 1.00 39.10 N
ATOM 15 C2 C A2619 34.321 -4.040 50.005 1.00 39.14 C
ATOM 16 O2 C A2619 35.065 -3.062 49.894 1.00 39.14 O
ATOM 17 N3 C A2619 33.057 -3.813 50.261 1.00 39.19 N
ATOM 18 C4 C A2619 32.278 -4.816 50.379 1.00 39.19 C
ATOM 19 N4 C A2619 31.053 -4.456 50.591 1.00 39.26 N
ATOM 20 C5 C A2619 32.679 -6.162 50.281 1.00 39.15 C
ATOM 21 C6 C A2619 33.965 -6.361 50.020 1.00 39.11 C
ATOM 22 P U A2620 38.280 -6.292 53.936 1.00 35.71 P
ATOM 23 OP1 U A2620 39.600 -6.725 54.505 1.00 35.63 O
ATOM 24 OP2 U A2620 36.995 -6.822 54.626 1.00 35.70 O
ATOM 25 O5' U A2620 38.276 -4.732 53.844 1.00 35.75 O
TER
ATOM 1 O3' U B2617 28.977 -12.715 49.403 1.00 46.98 O
ATOM 2 P U B2618 29.359 -13.100 50.883 1.00 46.85 P
ATOM 3 OP1 U B2618 30.131 -14.336 50.816 1.00 46.85 O
ATOM 4 OP2 U B2618 28.150 -13.078 51.699 1.00 46.86 O
ATOM 5 O5' U B2618 30.288 -11.891 51.262 1.00 46.72 O
ATOM 6 C5' U B2618 31.452 -11.632 50.498 1.00 46.72 C
ATOM 7 C4' U B2618 32.105 -10.333 50.884 1.00 46.62 C
ATOM 8 O4' U B2618 31.104 -9.291 50.907 1.00 46.67 O
ATOM 9 C3' U B2618 32.779 -10.309 52.241 1.00 46.45 C
ATOM 10 O3' U B2618 33.859 -9.376 52.179 1.00 46.40 O
ATOM 11 C2' U B2618 31.677 -9.764 53.137 1.00 46.43 C
ATOM 12 O2' U B2618 32.137 -9.140 54.302 1.00 46.31 O
ATOM 13 C1' U B2618 30.972 -8.767 52.210 1.00 46.55 C
ATOM 14 N1 U B2618 29.517 -8.597 52.479 1.00 46.63 N
ATOM 15 C2 U B2618 28.951 -7.377 52.721 1.00 46.65 C
ATOM 16 O2 U B2618 29.562 -6.351 52.787 1.00 46.61 O
ATOM 17 N3 U B2618 27.607 -7.326 52.916 1.00 46.73 N
ATOM 18 C4 U B2618 26.729 -8.378 52.892 1.00 46.80 C
ATOM 19 O4 U B2618 25.527 -8.208 53.129 1.00 46.88 O
ATOM 20 C5 U B2618 27.371 -9.612 52.575 1.00 46.78 C
ATOM 21 C6 U B2618 28.696 -9.670 52.388 1.00 46.70 C
ATOM 22 P C B2619 35.327 -9.780 52.679 1.00 38.78 P
ATOM 23 OP1 C B2619 35.308 -11.233 52.974 1.00 38.78 O
ATOM 24 OP2 C B2619 35.702 -8.792 53.767 1.00 38.67 O
ATOM 25 O5' C B2619 36.269 -9.544 51.426 1.00 38.86 O
TER
ATOM 2 P C A2619 35.327 -9.780 52.679 1.00 38.78 P
ATOM 3 OP1 C A2619 35.308 -11.233 52.974 1.00 38.78 O
ATOM 4 OP2 C A2619 35.702 -8.792 53.767 1.00 38.67 O
ATOM 5 O5' C A2619 36.269 -9.544 51.426 1.00 38.86 O
ATOM 6 C5' C A2619 35.981 -8.580 50.486 1.00 38.95 C
ATOM 7 C4' C A2619 37.023 -7.520 50.381 1.00 38.93 C
ATOM 8 O4' C A2619 36.629 -6.713 49.262 1.00 39.06 O
ATOM 9 C3' C A2619 37.112 -6.552 51.566 1.00 38.82 C
ATOM 10 O3' C A2619 38.257 -6.762 52.378 1.00 38.70 O
ATOM 11 C2' C A2619 37.077 -5.170 50.936 1.00 38.90 C
ATOM 12 O2' C A2619 38.377 -4.738 50.575 1.00 38.89 O
ATOM 13 C1' C A2619 36.304 -5.427 49.664 1.00 39.05 C
ATOM 14 N1 C A2619 34.825 -5.330 49.874 1.00 39.10 N
ATOM 15 C2 C A2619 34.321 -4.040 50.005 1.00 39.14 C
ATOM 16 O2 C A2619 35.065 -3.062 49.894 1.00 39.14 O
ATOM 17 N3 C A2619 33.057 -3.813 50.261 1.00 39.19 N
ATOM 18 C4 C A2619 32.278 -4.816 50.379 1.00 39.19 C
ATOM 19 N4 C A2619 31.053 -4.456 50.591 1.00 39.26 N
ATOM 20 C5 C A2619 32.679 -6.162 50.281 1.00 39.15 C
ATOM 21 C6 C A2619 33.965 -6.361 50.020 1.00 39.11 C
ATOM 22 P U A2620 38.280 -6.292 53.936 1.00 35.71 P
ATOM 23 OP1 U A2620 39.600 -6.725 54.505 1.00 35.63 O
ATOM 24 OP2 U A2620 36.995 -6.822 54.626 1.00 35.70 O
ATOM 25 O5' U A2620 38.276 -4.732 53.844 1.00 35.75 O
TER
ATOM 1 O3' U B2617 28.977 -12.715 49.403 1.00 46.98 O
ATOM 2 P U B2618 29.359 -13.100 50.883 1.00 46.85 P
ATOM 3 OP1 U B2618 30.131 -14.336 50.816 1.00 46.85 O
ATOM 4 OP2 U B2618 28.150 -13.078 51.699 1.00 46.86 O
ATOM 5 O5' U B2618 30.288 -11.891 51.262 1.00 46.72 O
ATOM 6 C5' U B2618 31.452 -11.632 50.498 1.00 46.72 C
ATOM 7 C4' U B2618 32.105 -10.333 50.884 1.00 46.62 C
ATOM 8 O4' U B2618 31.104 -9.291 50.907 1.00 46.67 O
ATOM 9 C3' U B2618 32.779 -10.309 52.241 1.00 46.45 C
ATOM 10 O3' U B2618 33.859 -9.376 52.179 1.00 46.40 O
ATOM 11 C2' U B2618 31.677 -9.764 53.137 1.00 46.43 C
ATOM 12 O2' U B2618 32.137 -9.140 54.302 1.00 46.31 O
ATOM 13 C1' U B2618 30.972 -8.767 52.210 1.00 46.55 C
ATOM 14 N1 U B2618 29.517 -8.597 52.479 1.00 46.63 N
ATOM 15 C2 U B2618 28.951 -7.377 52.721 1.00 46.65 C
ATOM 16 O2 U B2618 29.562 -6.351 52.787 1.00 46.61 O
ATOM 17 N3 U B2618 27.607 -7.326 52.916 1.00 46.73 N
ATOM 18 C4 U B2618 26.729 -8.378 52.892 1.00 46.80 C
ATOM 19 O4 U B2618 25.527 -8.208 53.129 1.00 46.88 O
ATOM 20 C5 U B2618 27.371 -9.612 52.575 1.00 46.78 C
ATOM 21 C6 U B2618 28.696 -9.670 52.388 1.00 46.70 C
ATOM 22 P C B2619 35.327 -9.780 52.679 1.00 38.78 P
ATOM 23 OP1 C B2619 35.308 -11.233 52.974 1.00 38.78 O
ATOM 24 OP2 C B2619 35.702 -8.792 53.767 1.00 38.67 O
ATOM 25 O5' C B2619 36.269 -9.544 51.426 1.00 38.86 O
TER
Atoms:
C2: (34.321,-4.040,50.005)
OP1: (35.308,-11.233,52.974)
OP2: (35.702,-8.792,53.767)
C4: (32.278,-4.816,50.379)
O5': (36.269,-9.544,51.426)
C3': (37.112,-6.552,51.566)
C1': (36.304,-5.427,49.664)
O4': (36.629,-6.713,49.262)
C5': (35.981,-8.580,50.486)
P: (35.327,-9.780,52.679)
O2: (35.065,-3.062,49.894)
C4': (37.023,-7.520,50.381)
C2': (37.077,-5.170,50.936)
O2': (38.377,-4.738,50.575)
N1: (34.825,-5.330,49.874)
N3: (33.057,-3.813,50.261)
N4: (31.053,-4.456,50.591)
C6: (33.965,-6.361,50.020)
C5: (32.679,-6.162,50.281)
O3': (38.257,-6.762,52.378)
OP1: (35.308,-11.233,52.974)
OP2: (35.702,-8.792,53.767)
C4: (32.278,-4.816,50.379)
O5': (36.269,-9.544,51.426)
C3': (37.112,-6.552,51.566)
C1': (36.304,-5.427,49.664)
O4': (36.629,-6.713,49.262)
C5': (35.981,-8.580,50.486)
P: (35.327,-9.780,52.679)
O2: (35.065,-3.062,49.894)
C4': (37.023,-7.520,50.381)
C2': (37.077,-5.170,50.936)
O2': (38.377,-4.738,50.575)
N1: (34.825,-5.330,49.874)
N3: (33.057,-3.813,50.261)
N4: (31.053,-4.456,50.591)
C6: (33.965,-6.361,50.020)
C5: (32.679,-6.162,50.281)
O3': (38.257,-6.762,52.378)
C4: (26.729,-8.378,52.892)
N3: (27.607,-7.326,52.916)
OP1: (30.131,-14.336,50.816)
OP2: (28.150,-13.078,51.699)
C2: (28.951,-7.377,52.721)
C1': (30.972,-8.767,52.210)
C3': (32.779,-10.309,52.241)
O5': (30.288,-11.891,51.262)
O4': (31.104,-9.291,50.907)
C5': (31.452,-11.632,50.498)
P: (29.359,-13.100,50.883)
C4': (32.105,-10.333,50.884)
C2': (31.677,-9.764,53.137)
O2': (32.137,-9.140,54.302)
N1: (29.517,-8.597,52.479)
O4: (25.527,-8.208,53.129)
O2: (29.562,-6.351,52.787)
C6: (28.696,-9.670,52.388)
C5: (27.371,-9.612,52.575)
O3': (33.859,-9.376,52.179)
N3: (27.607,-7.326,52.916)
OP1: (30.131,-14.336,50.816)
OP2: (28.150,-13.078,51.699)
C2: (28.951,-7.377,52.721)
C1': (30.972,-8.767,52.210)
C3': (32.779,-10.309,52.241)
O5': (30.288,-11.891,51.262)
O4': (31.104,-9.291,50.907)
C5': (31.452,-11.632,50.498)
P: (29.359,-13.100,50.883)
C4': (32.105,-10.333,50.884)
C2': (31.677,-9.764,53.137)
O2': (32.137,-9.140,54.302)
N1: (29.517,-8.597,52.479)
O4: (25.527,-8.208,53.129)
O2: (29.562,-6.351,52.787)
C6: (28.696,-9.670,52.388)
C5: (27.371,-9.612,52.575)
O3': (33.859,-9.376,52.179)
Image (generated by PyMOL):