Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12641:12640
Extra
PDB:
ATOM 1 O3' U A2640 10.778 18.954 30.095 1.00 46.30 O
ATOM 2 P C A2641 9.369 18.230 30.283 1.00 44.51 P
ATOM 3 OP1 C A2641 9.636 16.895 30.832 1.00 44.11 O
ATOM 4 OP2 C A2641 8.620 18.345 28.976 1.00 44.99 O
ATOM 5 O5' C A2641 8.706 19.139 31.400 1.00 44.53 O
ATOM 6 C5' C A2641 7.317 19.349 31.473 1.00 44.82 C
ATOM 7 C4' C A2641 7.002 20.489 32.393 1.00 44.87 C
ATOM 8 O4' C A2641 7.831 20.409 33.571 1.00 44.44 O
ATOM 9 C3' C A2641 7.300 21.854 31.843 1.00 45.20 C
ATOM 10 O3' C A2641 6.284 22.315 30.995 1.00 45.69 O
ATOM 11 C2' C A2641 7.472 22.691 33.097 1.00 45.05 C
ATOM 12 O2' C A2641 6.213 23.020 33.665 1.00 45.24 O
ATOM 13 C1' C A2641 8.176 21.703 34.015 1.00 44.52 C
ATOM 14 N1 C A2641 9.642 21.858 33.936 1.00 44.29 N
ATOM 15 C2 C A2641 10.245 23.037 34.432 1.00 44.31 C
ATOM 16 O2 C A2641 9.552 23.888 35.013 1.00 44.48 O
ATOM 17 N3 C A2641 11.570 23.220 34.283 1.00 44.14 N
ATOM 18 C4 C A2641 12.269 22.249 33.694 1.00 43.95 C
ATOM 19 N4 C A2641 13.591 22.404 33.553 1.00 43.78 N
ATOM 20 C5 C A2641 11.679 21.053 33.174 1.00 43.93 C
ATOM 21 C6 C A2641 10.371 20.914 33.294 1.00 44.11 C
ATOM 22 P A A2642 6.658 23.092 29.674 1.00 46.16 P
ATOM 23 OP1 A A2642 5.418 23.145 28.844 1.00 46.63 O
ATOM 24 OP2 A A2642 7.889 22.425 29.106 1.00 45.92 O
ATOM 25 O5' A A2642 7.013 24.549 30.232 1.00 46.26 O
TER
ATOM 1 O3' A B2639 14.804 14.022 30.011 1.00 53.45 O
ATOM 2 P U B2640 14.252 15.171 29.010 1.00 45.35 P
ATOM 3 OP1 U B2640 12.843 14.827 28.686 1.00 45.62 O
ATOM 4 OP2 U B2640 15.227 15.295 27.879 1.00 45.49 O
ATOM 5 O5' U B2640 14.309 16.473 29.903 1.00 45.32 O
ATOM 6 C5' U B2640 13.481 16.632 31.021 1.00 45.22 C
ATOM 7 C4' U B2640 12.769 17.963 30.974 1.00 45.57 C
ATOM 8 O4' U B2640 13.746 19.039 31.019 1.00 45.58 O
ATOM 9 C3' U B2640 11.913 18.223 29.721 1.00 46.06 C
ATOM 10 O3' U B2640 10.778 18.954 30.095 1.00 46.30 O
ATOM 11 C2' U B2640 12.792 19.131 28.891 1.00 46.26 C
ATOM 12 O2' U B2640 12.088 19.966 28.015 1.00 46.75 O
ATOM 13 C1' U B2640 13.467 19.947 29.974 1.00 46.03 C
ATOM 14 N1 U B2640 14.692 20.551 29.544 1.00 46.03 N
ATOM 15 C2 U B2640 14.855 21.902 29.730 1.00 46.21 C
ATOM 16 O2 U B2640 14.032 22.607 30.290 1.00 46.35 O
ATOM 17 N3 U B2640 16.041 22.408 29.253 1.00 46.23 N
ATOM 18 C4 U B2640 16.978 21.652 28.622 1.00 46.09 C
ATOM 19 O4 U B2640 17.978 22.179 28.246 1.00 46.13 O
ATOM 20 C5 U B2640 16.694 20.285 28.457 1.00 45.92 C
ATOM 21 C6 U B2640 15.564 19.774 28.904 1.00 45.90 C
ATOM 22 P C B2641 9.369 18.230 30.283 1.00 44.51 P
ATOM 23 OP1 C B2641 9.636 16.895 30.832 1.00 44.11 O
ATOM 24 OP2 C B2641 8.620 18.345 28.976 1.00 44.99 O
ATOM 25 O5' C B2641 8.706 19.139 31.400 1.00 44.53 O
TER
ATOM 2 P C A2641 9.369 18.230 30.283 1.00 44.51 P
ATOM 3 OP1 C A2641 9.636 16.895 30.832 1.00 44.11 O
ATOM 4 OP2 C A2641 8.620 18.345 28.976 1.00 44.99 O
ATOM 5 O5' C A2641 8.706 19.139 31.400 1.00 44.53 O
ATOM 6 C5' C A2641 7.317 19.349 31.473 1.00 44.82 C
ATOM 7 C4' C A2641 7.002 20.489 32.393 1.00 44.87 C
ATOM 8 O4' C A2641 7.831 20.409 33.571 1.00 44.44 O
ATOM 9 C3' C A2641 7.300 21.854 31.843 1.00 45.20 C
ATOM 10 O3' C A2641 6.284 22.315 30.995 1.00 45.69 O
ATOM 11 C2' C A2641 7.472 22.691 33.097 1.00 45.05 C
ATOM 12 O2' C A2641 6.213 23.020 33.665 1.00 45.24 O
ATOM 13 C1' C A2641 8.176 21.703 34.015 1.00 44.52 C
ATOM 14 N1 C A2641 9.642 21.858 33.936 1.00 44.29 N
ATOM 15 C2 C A2641 10.245 23.037 34.432 1.00 44.31 C
ATOM 16 O2 C A2641 9.552 23.888 35.013 1.00 44.48 O
ATOM 17 N3 C A2641 11.570 23.220 34.283 1.00 44.14 N
ATOM 18 C4 C A2641 12.269 22.249 33.694 1.00 43.95 C
ATOM 19 N4 C A2641 13.591 22.404 33.553 1.00 43.78 N
ATOM 20 C5 C A2641 11.679 21.053 33.174 1.00 43.93 C
ATOM 21 C6 C A2641 10.371 20.914 33.294 1.00 44.11 C
ATOM 22 P A A2642 6.658 23.092 29.674 1.00 46.16 P
ATOM 23 OP1 A A2642 5.418 23.145 28.844 1.00 46.63 O
ATOM 24 OP2 A A2642 7.889 22.425 29.106 1.00 45.92 O
ATOM 25 O5' A A2642 7.013 24.549 30.232 1.00 46.26 O
TER
ATOM 1 O3' A B2639 14.804 14.022 30.011 1.00 53.45 O
ATOM 2 P U B2640 14.252 15.171 29.010 1.00 45.35 P
ATOM 3 OP1 U B2640 12.843 14.827 28.686 1.00 45.62 O
ATOM 4 OP2 U B2640 15.227 15.295 27.879 1.00 45.49 O
ATOM 5 O5' U B2640 14.309 16.473 29.903 1.00 45.32 O
ATOM 6 C5' U B2640 13.481 16.632 31.021 1.00 45.22 C
ATOM 7 C4' U B2640 12.769 17.963 30.974 1.00 45.57 C
ATOM 8 O4' U B2640 13.746 19.039 31.019 1.00 45.58 O
ATOM 9 C3' U B2640 11.913 18.223 29.721 1.00 46.06 C
ATOM 10 O3' U B2640 10.778 18.954 30.095 1.00 46.30 O
ATOM 11 C2' U B2640 12.792 19.131 28.891 1.00 46.26 C
ATOM 12 O2' U B2640 12.088 19.966 28.015 1.00 46.75 O
ATOM 13 C1' U B2640 13.467 19.947 29.974 1.00 46.03 C
ATOM 14 N1 U B2640 14.692 20.551 29.544 1.00 46.03 N
ATOM 15 C2 U B2640 14.855 21.902 29.730 1.00 46.21 C
ATOM 16 O2 U B2640 14.032 22.607 30.290 1.00 46.35 O
ATOM 17 N3 U B2640 16.041 22.408 29.253 1.00 46.23 N
ATOM 18 C4 U B2640 16.978 21.652 28.622 1.00 46.09 C
ATOM 19 O4 U B2640 17.978 22.179 28.246 1.00 46.13 O
ATOM 20 C5 U B2640 16.694 20.285 28.457 1.00 45.92 C
ATOM 21 C6 U B2640 15.564 19.774 28.904 1.00 45.90 C
ATOM 22 P C B2641 9.369 18.230 30.283 1.00 44.51 P
ATOM 23 OP1 C B2641 9.636 16.895 30.832 1.00 44.11 O
ATOM 24 OP2 C B2641 8.620 18.345 28.976 1.00 44.99 O
ATOM 25 O5' C B2641 8.706 19.139 31.400 1.00 44.53 O
TER
Atoms:
C2: (10.245,23.037,34.432)
OP1: (9.636,16.895,30.832)
OP2: (8.620,18.345,28.976)
C4: (12.269,22.249,33.694)
O5': (8.706,19.139,31.400)
C3': (7.300,21.854,31.843)
C1': (8.176,21.703,34.015)
O4': (7.831,20.409,33.571)
C5': (7.317,19.349,31.473)
P: (9.369,18.230,30.283)
O2: (9.552,23.888,35.013)
C4': (7.002,20.489,32.393)
C2': (7.472,22.691,33.097)
O2': (6.213,23.020,33.665)
N1: (9.642,21.858,33.936)
N3: (11.570,23.220,34.283)
N4: (13.591,22.404,33.553)
C6: (10.371,20.914,33.294)
C5: (11.679,21.053,33.174)
O3': (6.284,22.315,30.995)
OP1: (9.636,16.895,30.832)
OP2: (8.620,18.345,28.976)
C4: (12.269,22.249,33.694)
O5': (8.706,19.139,31.400)
C3': (7.300,21.854,31.843)
C1': (8.176,21.703,34.015)
O4': (7.831,20.409,33.571)
C5': (7.317,19.349,31.473)
P: (9.369,18.230,30.283)
O2: (9.552,23.888,35.013)
C4': (7.002,20.489,32.393)
C2': (7.472,22.691,33.097)
O2': (6.213,23.020,33.665)
N1: (9.642,21.858,33.936)
N3: (11.570,23.220,34.283)
N4: (13.591,22.404,33.553)
C6: (10.371,20.914,33.294)
C5: (11.679,21.053,33.174)
O3': (6.284,22.315,30.995)
C4: (16.978,21.652,28.622)
N3: (16.041,22.408,29.253)
OP1: (12.843,14.827,28.686)
OP2: (15.227,15.295,27.879)
C2: (14.855,21.902,29.730)
C1': (13.467,19.947,29.974)
C3': (11.913,18.223,29.721)
O5': (14.309,16.473,29.903)
O4': (13.746,19.039,31.019)
C5': (13.481,16.632,31.021)
P: (14.252,15.171,29.010)
C4': (12.769,17.963,30.974)
C2': (12.792,19.131,28.891)
O2': (12.088,19.966,28.015)
N1: (14.692,20.551,29.544)
O4: (17.978,22.179,28.246)
O2: (14.032,22.607,30.290)
C6: (15.564,19.774,28.904)
C5: (16.694,20.285,28.457)
O3': (10.778,18.954,30.095)
N3: (16.041,22.408,29.253)
OP1: (12.843,14.827,28.686)
OP2: (15.227,15.295,27.879)
C2: (14.855,21.902,29.730)
C1': (13.467,19.947,29.974)
C3': (11.913,18.223,29.721)
O5': (14.309,16.473,29.903)
O4': (13.746,19.039,31.019)
C5': (13.481,16.632,31.021)
P: (14.252,15.171,29.010)
C4': (12.769,17.963,30.974)
C2': (12.792,19.131,28.891)
O2': (12.088,19.966,28.015)
N1: (14.692,20.551,29.544)
O4: (17.978,22.179,28.246)
O2: (14.032,22.607,30.290)
C6: (15.564,19.774,28.904)
C5: (16.694,20.285,28.457)
O3': (10.778,18.954,30.095)
Image (generated by PyMOL):