Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A12:A10
Extra
PDB:
ATOM 1 O3' G A 11 12.648 -15.473 10.654 1.00 23.49 O
ATOM 2 P C A 12 12.431 -15.528 9.073 1.00 25.28 P
ATOM 3 OP1 C A 12 11.539 -16.663 8.735 1.00 25.30 O
ATOM 4 OP2 C A 12 13.798 -15.468 8.502 1.00 27.01 O
ATOM 5 O5' C A 12 11.666 -14.176 8.743 1.00 23.49 O
ATOM 6 C5' C A 12 10.281 -14.179 8.461 1.00 19.47 C
ATOM 7 C4' C A 12 9.712 -12.802 8.668 1.00 18.90 C
ATOM 8 O4' C A 12 9.859 -12.429 10.057 1.00 16.10 O
ATOM 9 C3' C A 12 10.420 -11.678 7.932 1.00 20.58 C
ATOM 10 O3' C A 12 10.047 -11.614 6.568 1.00 22.97 O
ATOM 11 C2' C A 12 9.968 -10.459 8.716 1.00 19.41 C
ATOM 12 O2' C A 12 8.669 -10.039 8.356 1.00 22.76 O
ATOM 13 C1' C A 12 9.952 -11.017 10.143 1.00 16.70 C
ATOM 14 N1 C A 12 11.168 -10.667 10.870 1.00 14.86 N
ATOM 15 C2 C A 12 11.194 -9.456 11.562 1.00 16.08 C
ATOM 16 O2 C A 12 10.176 -8.747 11.555 1.00 15.58 O
ATOM 17 N3 C A 12 12.322 -9.087 12.218 1.00 14.81 N
ATOM 18 C4 C A 12 13.386 -9.887 12.206 1.00 11.61 C
ATOM 19 N4 C A 12 14.460 -9.492 12.872 1.00 7.60 N
ATOM 20 C5 C A 12 13.385 -11.134 11.510 1.00 13.58 C
ATOM 21 C6 C A 12 12.262 -11.485 10.864 1.00 14.50 C
ATOM 22 P A A 13 11.009 -12.275 5.468 1.00 26.49 P
ATOM 23 OP1 A A 13 10.618 -11.752 4.135 1.00 27.95 O
ATOM 24 OP2 A A 13 11.029 -13.742 5.696 1.00 27.09 O
ATOM 25 O5' A A 13 12.451 -11.715 5.855 1.00 25.22 O
TER
ATOM 1 O3' G B 9 22.001 -16.283 13.674 1.00 27.16 O
ATOM 2 P C B 10 20.988 -16.932 12.628 1.00 31.03 P
ATOM 3 OP1 C B 10 19.902 -17.559 13.433 1.00 32.05 O
ATOM 4 OP2 C B 10 21.777 -17.753 11.666 1.00 27.22 O
ATOM 5 O5' C B 10 20.374 -15.684 11.855 1.00 32.60 O
ATOM 6 C5' C B 10 18.974 -15.602 11.588 1.00 31.54 C
ATOM 7 C4' C B 10 18.405 -14.359 12.220 1.00 31.90 C
ATOM 8 O4' C B 10 19.092 -13.201 11.701 1.00 34.70 O
ATOM 9 C3' C B 10 16.946 -14.073 11.911 1.00 30.96 C
ATOM 10 O3' C B 10 16.134 -14.808 12.824 1.00 28.96 O
ATOM 11 C2' C B 10 16.837 -12.565 12.192 1.00 30.93 C
ATOM 12 O2' C B 10 16.576 -12.291 13.561 1.00 27.50 O
ATOM 13 C1' C B 10 18.256 -12.066 11.853 1.00 32.70 C
ATOM 14 N1 C B 10 18.484 -11.159 10.702 1.00 31.76 N
ATOM 15 C2 C B 10 18.991 -9.857 10.947 1.00 30.10 C
ATOM 16 O2 C B 10 19.143 -9.471 12.118 1.00 29.24 O
ATOM 17 N3 C B 10 19.306 -9.066 9.901 1.00 29.39 N
ATOM 18 C4 C B 10 19.138 -9.511 8.657 1.00 30.81 C
ATOM 19 N4 C B 10 19.534 -8.725 7.664 1.00 29.26 N
ATOM 20 C5 C B 10 18.572 -10.796 8.378 1.00 32.00 C
ATOM 21 C6 C B 10 18.258 -11.577 9.421 1.00 32.46 C
ATOM 22 P G B 11 15.824 -16.368 12.569 1.00 22.45 P
ATOM 23 OP1 G B 11 16.667 -17.077 13.558 1.00 22.55 O
ATOM 24 OP2 G B 11 15.940 -16.715 11.129 1.00 21.20 O
ATOM 25 O5' G B 11 14.295 -16.472 13.007 1.00 21.36 O
TER
ATOM 2 P C A 12 12.431 -15.528 9.073 1.00 25.28 P
ATOM 3 OP1 C A 12 11.539 -16.663 8.735 1.00 25.30 O
ATOM 4 OP2 C A 12 13.798 -15.468 8.502 1.00 27.01 O
ATOM 5 O5' C A 12 11.666 -14.176 8.743 1.00 23.49 O
ATOM 6 C5' C A 12 10.281 -14.179 8.461 1.00 19.47 C
ATOM 7 C4' C A 12 9.712 -12.802 8.668 1.00 18.90 C
ATOM 8 O4' C A 12 9.859 -12.429 10.057 1.00 16.10 O
ATOM 9 C3' C A 12 10.420 -11.678 7.932 1.00 20.58 C
ATOM 10 O3' C A 12 10.047 -11.614 6.568 1.00 22.97 O
ATOM 11 C2' C A 12 9.968 -10.459 8.716 1.00 19.41 C
ATOM 12 O2' C A 12 8.669 -10.039 8.356 1.00 22.76 O
ATOM 13 C1' C A 12 9.952 -11.017 10.143 1.00 16.70 C
ATOM 14 N1 C A 12 11.168 -10.667 10.870 1.00 14.86 N
ATOM 15 C2 C A 12 11.194 -9.456 11.562 1.00 16.08 C
ATOM 16 O2 C A 12 10.176 -8.747 11.555 1.00 15.58 O
ATOM 17 N3 C A 12 12.322 -9.087 12.218 1.00 14.81 N
ATOM 18 C4 C A 12 13.386 -9.887 12.206 1.00 11.61 C
ATOM 19 N4 C A 12 14.460 -9.492 12.872 1.00 7.60 N
ATOM 20 C5 C A 12 13.385 -11.134 11.510 1.00 13.58 C
ATOM 21 C6 C A 12 12.262 -11.485 10.864 1.00 14.50 C
ATOM 22 P A A 13 11.009 -12.275 5.468 1.00 26.49 P
ATOM 23 OP1 A A 13 10.618 -11.752 4.135 1.00 27.95 O
ATOM 24 OP2 A A 13 11.029 -13.742 5.696 1.00 27.09 O
ATOM 25 O5' A A 13 12.451 -11.715 5.855 1.00 25.22 O
TER
ATOM 1 O3' G B 9 22.001 -16.283 13.674 1.00 27.16 O
ATOM 2 P C B 10 20.988 -16.932 12.628 1.00 31.03 P
ATOM 3 OP1 C B 10 19.902 -17.559 13.433 1.00 32.05 O
ATOM 4 OP2 C B 10 21.777 -17.753 11.666 1.00 27.22 O
ATOM 5 O5' C B 10 20.374 -15.684 11.855 1.00 32.60 O
ATOM 6 C5' C B 10 18.974 -15.602 11.588 1.00 31.54 C
ATOM 7 C4' C B 10 18.405 -14.359 12.220 1.00 31.90 C
ATOM 8 O4' C B 10 19.092 -13.201 11.701 1.00 34.70 O
ATOM 9 C3' C B 10 16.946 -14.073 11.911 1.00 30.96 C
ATOM 10 O3' C B 10 16.134 -14.808 12.824 1.00 28.96 O
ATOM 11 C2' C B 10 16.837 -12.565 12.192 1.00 30.93 C
ATOM 12 O2' C B 10 16.576 -12.291 13.561 1.00 27.50 O
ATOM 13 C1' C B 10 18.256 -12.066 11.853 1.00 32.70 C
ATOM 14 N1 C B 10 18.484 -11.159 10.702 1.00 31.76 N
ATOM 15 C2 C B 10 18.991 -9.857 10.947 1.00 30.10 C
ATOM 16 O2 C B 10 19.143 -9.471 12.118 1.00 29.24 O
ATOM 17 N3 C B 10 19.306 -9.066 9.901 1.00 29.39 N
ATOM 18 C4 C B 10 19.138 -9.511 8.657 1.00 30.81 C
ATOM 19 N4 C B 10 19.534 -8.725 7.664 1.00 29.26 N
ATOM 20 C5 C B 10 18.572 -10.796 8.378 1.00 32.00 C
ATOM 21 C6 C B 10 18.258 -11.577 9.421 1.00 32.46 C
ATOM 22 P G B 11 15.824 -16.368 12.569 1.00 22.45 P
ATOM 23 OP1 G B 11 16.667 -17.077 13.558 1.00 22.55 O
ATOM 24 OP2 G B 11 15.940 -16.715 11.129 1.00 21.20 O
ATOM 25 O5' G B 11 14.295 -16.472 13.007 1.00 21.36 O
TER
Atoms:
C2: (11.194,-9.456,11.562)
OP1: (11.539,-16.663,8.735)
OP2: (13.798,-15.468,8.502)
C4: (13.386,-9.887,12.206)
O5': (11.666,-14.176,8.743)
C3': (10.420,-11.678,7.932)
C1': (9.952,-11.017,10.143)
O4': (9.859,-12.429,10.057)
C5': (10.281,-14.179,8.461)
P: (12.431,-15.528,9.073)
O2: (10.176,-8.747,11.555)
C4': (9.712,-12.802,8.668)
C2': (9.968,-10.459,8.716)
O2': (8.669,-10.039,8.356)
N1: (11.168,-10.667,10.870)
N3: (12.322,-9.087,12.218)
N4: (14.460,-9.492,12.872)
C6: (12.262,-11.485,10.864)
C5: (13.385,-11.134,11.510)
O3': (10.047,-11.614,6.568)
OP1: (11.539,-16.663,8.735)
OP2: (13.798,-15.468,8.502)
C4: (13.386,-9.887,12.206)
O5': (11.666,-14.176,8.743)
C3': (10.420,-11.678,7.932)
C1': (9.952,-11.017,10.143)
O4': (9.859,-12.429,10.057)
C5': (10.281,-14.179,8.461)
P: (12.431,-15.528,9.073)
O2: (10.176,-8.747,11.555)
C4': (9.712,-12.802,8.668)
C2': (9.968,-10.459,8.716)
O2': (8.669,-10.039,8.356)
N1: (11.168,-10.667,10.870)
N3: (12.322,-9.087,12.218)
N4: (14.460,-9.492,12.872)
C6: (12.262,-11.485,10.864)
C5: (13.385,-11.134,11.510)
O3': (10.047,-11.614,6.568)
C2: (18.991,-9.857,10.947)
OP1: (19.902,-17.559,13.433)
OP2: (21.777,-17.753,11.666)
C4: (19.138,-9.511,8.657)
O5': (20.374,-15.684,11.855)
C3': (16.946,-14.073,11.911)
C1': (18.256,-12.066,11.853)
O4': (19.092,-13.201,11.701)
C5': (18.974,-15.602,11.588)
P: (20.988,-16.932,12.628)
O2: (19.143,-9.471,12.118)
C4': (18.405,-14.359,12.220)
C2': (16.837,-12.565,12.192)
O2': (16.576,-12.291,13.561)
N1: (18.484,-11.159,10.702)
N3: (19.306,-9.066,9.901)
N4: (19.534,-8.725,7.664)
C6: (18.258,-11.577,9.421)
C5: (18.572,-10.796,8.378)
O3': (16.134,-14.808,12.824)
OP1: (19.902,-17.559,13.433)
OP2: (21.777,-17.753,11.666)
C4: (19.138,-9.511,8.657)
O5': (20.374,-15.684,11.855)
C3': (16.946,-14.073,11.911)
C1': (18.256,-12.066,11.853)
O4': (19.092,-13.201,11.701)
C5': (18.974,-15.602,11.588)
P: (20.988,-16.932,12.628)
O2: (19.143,-9.471,12.118)
C4': (18.405,-14.359,12.220)
C2': (16.837,-12.565,12.192)
O2': (16.576,-12.291,13.561)
N1: (18.484,-11.159,10.702)
N3: (19.306,-9.066,9.901)
N4: (19.534,-8.725,7.664)
C6: (18.258,-11.577,9.421)
C5: (18.572,-10.796,8.378)
O3': (16.134,-14.808,12.824)
Image (generated by PyMOL):