Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0902:01002
Extra
PDB:
ATOM 1 O3' A A 901 51.426 92.461 88.648 1.00 29.02 O
ATOM 2 P C A 902 51.824 91.570 89.926 1.00 27.44 P
ATOM 3 OP1 C A 902 50.777 91.753 90.960 1.00 29.59 O
ATOM 4 OP2 C A 902 53.247 91.855 90.264 1.00 31.77 O
ATOM 5 O5' C A 902 51.709 90.071 89.402 1.00 27.07 O
ATOM 6 C5' C A 902 52.709 89.497 88.545 1.00 25.07 C
ATOM 7 C4' C A 902 52.245 88.155 88.027 1.00 24.82 C
ATOM 8 O4' C A 902 51.040 88.323 87.236 1.00 24.46 O
ATOM 9 C3' C A 902 53.211 87.464 87.083 1.00 25.98 C
ATOM 10 O3' C A 902 54.187 86.737 87.826 1.00 29.56 O
ATOM 11 C2' C A 902 52.299 86.540 86.293 1.00 24.57 C
ATOM 12 O2' C A 902 51.968 85.380 87.015 1.00 28.19 O
ATOM 13 C1' C A 902 51.034 87.386 86.171 1.00 23.62 C
ATOM 14 N1 C A 902 50.885 88.099 84.884 1.00 26.35 N
ATOM 15 C2 C A 902 50.834 87.349 83.696 1.00 27.95 C
ATOM 16 O2 C A 902 50.943 86.113 83.753 1.00 29.25 O
ATOM 17 N3 C A 902 50.668 87.989 82.518 1.00 28.08 N
ATOM 18 C4 C A 902 50.553 89.318 82.488 1.00 28.01 C
ATOM 19 N4 C A 902 50.369 89.899 81.300 1.00 28.25 N
ATOM 20 C5 C A 902 50.617 90.107 83.673 1.00 25.32 C
ATOM 21 C6 C A 902 50.783 89.464 84.835 1.00 26.01 C
ATOM 22 P A A 903 55.636 86.471 87.193 1.00 31.71 P
ATOM 23 OP1 A A 903 56.510 85.936 88.261 1.00 31.66 O
ATOM 24 OP2 A A 903 56.038 87.705 86.471 1.00 32.36 O
ATOM 25 O5' A A 903 55.387 85.311 86.129 1.00 31.48 O
TER
ATOM 1 O3' U B1001 48.964 96.649 82.604 1.00 25.80 O
ATOM 2 P C B1002 50.456 97.203 82.761 1.00 28.25 P
ATOM 3 OP1 C B1002 50.493 97.951 84.043 1.00 26.75 O
ATOM 4 OP2 C B1002 50.866 97.870 81.501 1.00 27.47 O
ATOM 5 O5' C B1002 51.346 95.894 82.889 1.00 25.71 O
ATOM 6 C5' C B1002 51.083 94.935 83.914 1.00 28.05 C
ATOM 7 C4' C B1002 52.049 93.795 83.806 1.00 28.48 C
ATOM 8 O4' C B1002 51.811 93.053 82.586 1.00 28.05 O
ATOM 9 C3' C B1002 53.496 94.213 83.646 1.00 29.49 C
ATOM 10 O3' C B1002 54.023 94.610 84.911 1.00 33.45 O
ATOM 11 C2' C B1002 54.128 92.929 83.114 1.00 28.32 C
ATOM 12 O2' C B1002 54.364 91.997 84.141 1.00 30.68 O
ATOM 13 C1' C B1002 52.998 92.366 82.243 1.00 27.76 C
ATOM 14 N1 C B1002 53.216 92.457 80.789 1.00 27.50 N
ATOM 15 C2 C B1002 54.037 91.504 80.189 1.00 28.59 C
ATOM 16 O2 C B1002 54.545 90.618 80.897 1.00 31.51 O
ATOM 17 N3 C B1002 54.256 91.565 78.854 1.00 26.75 N
ATOM 18 C4 C B1002 53.685 92.522 78.125 1.00 23.93 C
ATOM 19 N4 C B1002 53.926 92.527 76.810 1.00 23.74 N
ATOM 20 C5 C B1002 52.841 93.509 78.709 1.00 23.05 C
ATOM 21 C6 C B1002 52.635 93.440 80.034 1.00 25.87 C
ATOM 22 P C B1003 55.168 95.735 84.992 1.00 31.93 P
ATOM 23 OP1 C B1003 55.810 95.820 83.671 1.00 34.98 O
ATOM 24 OP2 C B1003 55.989 95.406 86.182 1.00 36.32 O
ATOM 25 O5' C B1003 54.417 97.115 85.275 1.00 30.35 O
TER
ATOM 2 P C A 902 51.824 91.570 89.926 1.00 27.44 P
ATOM 3 OP1 C A 902 50.777 91.753 90.960 1.00 29.59 O
ATOM 4 OP2 C A 902 53.247 91.855 90.264 1.00 31.77 O
ATOM 5 O5' C A 902 51.709 90.071 89.402 1.00 27.07 O
ATOM 6 C5' C A 902 52.709 89.497 88.545 1.00 25.07 C
ATOM 7 C4' C A 902 52.245 88.155 88.027 1.00 24.82 C
ATOM 8 O4' C A 902 51.040 88.323 87.236 1.00 24.46 O
ATOM 9 C3' C A 902 53.211 87.464 87.083 1.00 25.98 C
ATOM 10 O3' C A 902 54.187 86.737 87.826 1.00 29.56 O
ATOM 11 C2' C A 902 52.299 86.540 86.293 1.00 24.57 C
ATOM 12 O2' C A 902 51.968 85.380 87.015 1.00 28.19 O
ATOM 13 C1' C A 902 51.034 87.386 86.171 1.00 23.62 C
ATOM 14 N1 C A 902 50.885 88.099 84.884 1.00 26.35 N
ATOM 15 C2 C A 902 50.834 87.349 83.696 1.00 27.95 C
ATOM 16 O2 C A 902 50.943 86.113 83.753 1.00 29.25 O
ATOM 17 N3 C A 902 50.668 87.989 82.518 1.00 28.08 N
ATOM 18 C4 C A 902 50.553 89.318 82.488 1.00 28.01 C
ATOM 19 N4 C A 902 50.369 89.899 81.300 1.00 28.25 N
ATOM 20 C5 C A 902 50.617 90.107 83.673 1.00 25.32 C
ATOM 21 C6 C A 902 50.783 89.464 84.835 1.00 26.01 C
ATOM 22 P A A 903 55.636 86.471 87.193 1.00 31.71 P
ATOM 23 OP1 A A 903 56.510 85.936 88.261 1.00 31.66 O
ATOM 24 OP2 A A 903 56.038 87.705 86.471 1.00 32.36 O
ATOM 25 O5' A A 903 55.387 85.311 86.129 1.00 31.48 O
TER
ATOM 1 O3' U B1001 48.964 96.649 82.604 1.00 25.80 O
ATOM 2 P C B1002 50.456 97.203 82.761 1.00 28.25 P
ATOM 3 OP1 C B1002 50.493 97.951 84.043 1.00 26.75 O
ATOM 4 OP2 C B1002 50.866 97.870 81.501 1.00 27.47 O
ATOM 5 O5' C B1002 51.346 95.894 82.889 1.00 25.71 O
ATOM 6 C5' C B1002 51.083 94.935 83.914 1.00 28.05 C
ATOM 7 C4' C B1002 52.049 93.795 83.806 1.00 28.48 C
ATOM 8 O4' C B1002 51.811 93.053 82.586 1.00 28.05 O
ATOM 9 C3' C B1002 53.496 94.213 83.646 1.00 29.49 C
ATOM 10 O3' C B1002 54.023 94.610 84.911 1.00 33.45 O
ATOM 11 C2' C B1002 54.128 92.929 83.114 1.00 28.32 C
ATOM 12 O2' C B1002 54.364 91.997 84.141 1.00 30.68 O
ATOM 13 C1' C B1002 52.998 92.366 82.243 1.00 27.76 C
ATOM 14 N1 C B1002 53.216 92.457 80.789 1.00 27.50 N
ATOM 15 C2 C B1002 54.037 91.504 80.189 1.00 28.59 C
ATOM 16 O2 C B1002 54.545 90.618 80.897 1.00 31.51 O
ATOM 17 N3 C B1002 54.256 91.565 78.854 1.00 26.75 N
ATOM 18 C4 C B1002 53.685 92.522 78.125 1.00 23.93 C
ATOM 19 N4 C B1002 53.926 92.527 76.810 1.00 23.74 N
ATOM 20 C5 C B1002 52.841 93.509 78.709 1.00 23.05 C
ATOM 21 C6 C B1002 52.635 93.440 80.034 1.00 25.87 C
ATOM 22 P C B1003 55.168 95.735 84.992 1.00 31.93 P
ATOM 23 OP1 C B1003 55.810 95.820 83.671 1.00 34.98 O
ATOM 24 OP2 C B1003 55.989 95.406 86.182 1.00 36.32 O
ATOM 25 O5' C B1003 54.417 97.115 85.275 1.00 30.35 O
TER
Atoms:
C2: (50.834,87.349,83.696)
OP1: (50.777,91.753,90.960)
OP2: (53.247,91.855,90.264)
C4: (50.553,89.318,82.488)
O5': (51.709,90.071,89.402)
C3': (53.211,87.464,87.083)
C1': (51.034,87.386,86.171)
O4': (51.040,88.323,87.236)
C5': (52.709,89.497,88.545)
P: (51.824,91.570,89.926)
O2: (50.943,86.113,83.753)
C4': (52.245,88.155,88.027)
C2': (52.299,86.540,86.293)
O2': (51.968,85.380,87.015)
N1: (50.885,88.099,84.884)
N3: (50.668,87.989,82.518)
N4: (50.369,89.899,81.300)
C6: (50.783,89.464,84.835)
C5: (50.617,90.107,83.673)
O3': (54.187,86.737,87.826)
OP1: (50.777,91.753,90.960)
OP2: (53.247,91.855,90.264)
C4: (50.553,89.318,82.488)
O5': (51.709,90.071,89.402)
C3': (53.211,87.464,87.083)
C1': (51.034,87.386,86.171)
O4': (51.040,88.323,87.236)
C5': (52.709,89.497,88.545)
P: (51.824,91.570,89.926)
O2: (50.943,86.113,83.753)
C4': (52.245,88.155,88.027)
C2': (52.299,86.540,86.293)
O2': (51.968,85.380,87.015)
N1: (50.885,88.099,84.884)
N3: (50.668,87.989,82.518)
N4: (50.369,89.899,81.300)
C6: (50.783,89.464,84.835)
C5: (50.617,90.107,83.673)
O3': (54.187,86.737,87.826)
C2: (54.037,91.504,80.189)
OP1: (50.493,97.951,84.043)
OP2: (50.866,97.870,81.501)
C4: (53.685,92.522,78.125)
O5': (51.346,95.894,82.889)
C3': (53.496,94.213,83.646)
C1': (52.998,92.366,82.243)
O4': (51.811,93.053,82.586)
C5': (51.083,94.935,83.914)
P: (50.456,97.203,82.761)
O2: (54.545,90.618,80.897)
C4': (52.049,93.795,83.806)
C2': (54.128,92.929,83.114)
O2': (54.364,91.997,84.141)
N1: (53.216,92.457,80.789)
N3: (54.256,91.565,78.854)
N4: (53.926,92.527,76.810)
C6: (52.635,93.440,80.034)
C5: (52.841,93.509,78.709)
O3': (54.023,94.610,84.911)
OP1: (50.493,97.951,84.043)
OP2: (50.866,97.870,81.501)
C4: (53.685,92.522,78.125)
O5': (51.346,95.894,82.889)
C3': (53.496,94.213,83.646)
C1': (52.998,92.366,82.243)
O4': (51.811,93.053,82.586)
C5': (51.083,94.935,83.914)
P: (50.456,97.203,82.761)
O2: (54.545,90.618,80.897)
C4': (52.049,93.795,83.806)
C2': (54.128,92.929,83.114)
O2': (54.364,91.997,84.141)
N1: (53.216,92.457,80.789)
N3: (54.256,91.565,78.854)
N4: (53.926,92.527,76.810)
C6: (52.635,93.440,80.034)
C5: (52.841,93.509,78.709)
O3': (54.023,94.610,84.911)
Image (generated by PyMOL):