Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0902:01002
Extra
PDB:
ATOM 1 O3' A A 901 51.621 92.587 88.934 1.00 33.65 O
ATOM 2 P C A 902 52.027 91.685 90.206 1.00 35.37 P
ATOM 3 OP1 C A 902 51.018 91.895 91.290 1.00 35.37 O
ATOM 4 OP2 C A 902 53.467 91.954 90.487 1.00 34.39 O
ATOM 5 O5' C A 902 51.875 90.180 89.689 1.00 32.56 O
ATOM 6 C5' C A 902 52.895 89.569 88.870 1.00 32.14 C
ATOM 7 C4' C A 902 52.441 88.214 88.371 1.00 31.64 C
ATOM 8 O4' C A 902 51.226 88.362 87.589 1.00 31.64 O
ATOM 9 C3' C A 902 53.417 87.534 87.425 1.00 31.44 C
ATOM 10 O3' C A 902 54.401 86.793 88.145 1.00 35.24 O
ATOM 11 C2' C A 902 52.515 86.614 86.619 1.00 30.79 C
ATOM 12 O2' C A 902 52.232 85.431 87.320 1.00 32.72 O
ATOM 13 C1' C A 902 51.238 87.450 86.503 1.00 29.69 C
ATOM 14 N1 C A 902 51.109 88.203 85.235 1.00 29.90 N
ATOM 15 C2 C A 902 50.992 87.490 84.034 1.00 31.63 C
ATOM 16 O2 C A 902 50.995 86.251 84.063 1.00 31.82 O
ATOM 17 N3 C A 902 50.876 88.170 82.870 1.00 31.67 N
ATOM 18 C4 C A 902 50.864 89.503 82.874 1.00 30.14 C
ATOM 19 N4 C A 902 50.726 90.126 81.702 1.00 30.61 N
ATOM 20 C5 C A 902 50.985 90.253 84.075 1.00 27.70 C
ATOM 21 C6 C A 902 51.103 89.571 85.221 1.00 29.52 C
ATOM 22 P A A 903 55.878 86.613 87.530 1.00 38.31 P
ATOM 23 OP1 A A 903 56.772 86.098 88.591 1.00 38.15 O
ATOM 24 OP2 A A 903 56.222 87.881 86.844 1.00 40.70 O
ATOM 25 O5' A A 903 55.712 85.456 86.451 1.00 36.79 O
TER
ATOM 1 O3' U B1001 49.181 96.739 82.965 1.00 32.71 O
ATOM 2 P C B1002 50.669 97.319 83.086 1.00 34.07 P
ATOM 3 OP1 C B1002 50.753 98.077 84.354 1.00 33.50 O
ATOM 4 OP2 C B1002 51.016 97.975 81.803 1.00 32.80 O
ATOM 5 O5' C B1002 51.571 96.023 83.212 1.00 32.34 O
ATOM 6 C5' C B1002 51.300 95.047 84.208 1.00 33.31 C
ATOM 7 C4' C B1002 52.301 93.939 84.117 1.00 35.74 C
ATOM 8 O4' C B1002 52.068 93.165 82.924 1.00 36.37 O
ATOM 9 C3' C B1002 53.745 94.380 83.954 1.00 36.47 C
ATOM 10 O3' C B1002 54.267 94.764 85.219 1.00 40.87 O
ATOM 11 C2' C B1002 54.393 93.099 83.440 1.00 36.41 C
ATOM 12 O2' C B1002 54.631 92.172 84.477 1.00 38.01 O
ATOM 13 C1' C B1002 53.276 92.519 82.566 1.00 36.34 C
ATOM 14 N1 C B1002 53.478 92.635 81.113 1.00 35.75 N
ATOM 15 C2 C B1002 54.317 91.712 80.482 1.00 37.16 C
ATOM 16 O2 C B1002 54.872 90.836 81.168 1.00 37.16 O
ATOM 17 N3 C B1002 54.504 91.795 79.145 1.00 36.97 N
ATOM 18 C4 C B1002 53.891 92.751 78.444 1.00 36.38 C
ATOM 19 N4 C B1002 54.102 92.791 77.130 1.00 37.07 N
ATOM 20 C5 C B1002 53.035 93.706 79.061 1.00 36.22 C
ATOM 21 C6 C B1002 52.858 93.613 80.385 1.00 35.87 C
ATOM 22 P C B1003 55.351 95.940 85.332 1.00 41.76 P
ATOM 23 OP1 C B1003 56.052 96.083 84.042 1.00 44.77 O
ATOM 24 OP2 C B1003 56.128 95.613 86.556 1.00 43.73 O
ATOM 25 O5' C B1003 54.530 97.288 85.603 1.00 41.92 O
TER
ATOM 2 P C A 902 52.027 91.685 90.206 1.00 35.37 P
ATOM 3 OP1 C A 902 51.018 91.895 91.290 1.00 35.37 O
ATOM 4 OP2 C A 902 53.467 91.954 90.487 1.00 34.39 O
ATOM 5 O5' C A 902 51.875 90.180 89.689 1.00 32.56 O
ATOM 6 C5' C A 902 52.895 89.569 88.870 1.00 32.14 C
ATOM 7 C4' C A 902 52.441 88.214 88.371 1.00 31.64 C
ATOM 8 O4' C A 902 51.226 88.362 87.589 1.00 31.64 O
ATOM 9 C3' C A 902 53.417 87.534 87.425 1.00 31.44 C
ATOM 10 O3' C A 902 54.401 86.793 88.145 1.00 35.24 O
ATOM 11 C2' C A 902 52.515 86.614 86.619 1.00 30.79 C
ATOM 12 O2' C A 902 52.232 85.431 87.320 1.00 32.72 O
ATOM 13 C1' C A 902 51.238 87.450 86.503 1.00 29.69 C
ATOM 14 N1 C A 902 51.109 88.203 85.235 1.00 29.90 N
ATOM 15 C2 C A 902 50.992 87.490 84.034 1.00 31.63 C
ATOM 16 O2 C A 902 50.995 86.251 84.063 1.00 31.82 O
ATOM 17 N3 C A 902 50.876 88.170 82.870 1.00 31.67 N
ATOM 18 C4 C A 902 50.864 89.503 82.874 1.00 30.14 C
ATOM 19 N4 C A 902 50.726 90.126 81.702 1.00 30.61 N
ATOM 20 C5 C A 902 50.985 90.253 84.075 1.00 27.70 C
ATOM 21 C6 C A 902 51.103 89.571 85.221 1.00 29.52 C
ATOM 22 P A A 903 55.878 86.613 87.530 1.00 38.31 P
ATOM 23 OP1 A A 903 56.772 86.098 88.591 1.00 38.15 O
ATOM 24 OP2 A A 903 56.222 87.881 86.844 1.00 40.70 O
ATOM 25 O5' A A 903 55.712 85.456 86.451 1.00 36.79 O
TER
ATOM 1 O3' U B1001 49.181 96.739 82.965 1.00 32.71 O
ATOM 2 P C B1002 50.669 97.319 83.086 1.00 34.07 P
ATOM 3 OP1 C B1002 50.753 98.077 84.354 1.00 33.50 O
ATOM 4 OP2 C B1002 51.016 97.975 81.803 1.00 32.80 O
ATOM 5 O5' C B1002 51.571 96.023 83.212 1.00 32.34 O
ATOM 6 C5' C B1002 51.300 95.047 84.208 1.00 33.31 C
ATOM 7 C4' C B1002 52.301 93.939 84.117 1.00 35.74 C
ATOM 8 O4' C B1002 52.068 93.165 82.924 1.00 36.37 O
ATOM 9 C3' C B1002 53.745 94.380 83.954 1.00 36.47 C
ATOM 10 O3' C B1002 54.267 94.764 85.219 1.00 40.87 O
ATOM 11 C2' C B1002 54.393 93.099 83.440 1.00 36.41 C
ATOM 12 O2' C B1002 54.631 92.172 84.477 1.00 38.01 O
ATOM 13 C1' C B1002 53.276 92.519 82.566 1.00 36.34 C
ATOM 14 N1 C B1002 53.478 92.635 81.113 1.00 35.75 N
ATOM 15 C2 C B1002 54.317 91.712 80.482 1.00 37.16 C
ATOM 16 O2 C B1002 54.872 90.836 81.168 1.00 37.16 O
ATOM 17 N3 C B1002 54.504 91.795 79.145 1.00 36.97 N
ATOM 18 C4 C B1002 53.891 92.751 78.444 1.00 36.38 C
ATOM 19 N4 C B1002 54.102 92.791 77.130 1.00 37.07 N
ATOM 20 C5 C B1002 53.035 93.706 79.061 1.00 36.22 C
ATOM 21 C6 C B1002 52.858 93.613 80.385 1.00 35.87 C
ATOM 22 P C B1003 55.351 95.940 85.332 1.00 41.76 P
ATOM 23 OP1 C B1003 56.052 96.083 84.042 1.00 44.77 O
ATOM 24 OP2 C B1003 56.128 95.613 86.556 1.00 43.73 O
ATOM 25 O5' C B1003 54.530 97.288 85.603 1.00 41.92 O
TER
Atoms:
C2: (50.992,87.490,84.034)
OP1: (51.018,91.895,91.290)
OP2: (53.467,91.954,90.487)
C4: (50.864,89.503,82.874)
O5': (51.875,90.180,89.689)
C3': (53.417,87.534,87.425)
C1': (51.238,87.450,86.503)
O4': (51.226,88.362,87.589)
C5': (52.895,89.569,88.870)
P: (52.027,91.685,90.206)
O2: (50.995,86.251,84.063)
C4': (52.441,88.214,88.371)
C2': (52.515,86.614,86.619)
O2': (52.232,85.431,87.320)
N1: (51.109,88.203,85.235)
N3: (50.876,88.170,82.870)
N4: (50.726,90.126,81.702)
C6: (51.103,89.571,85.221)
C5: (50.985,90.253,84.075)
O3': (54.401,86.793,88.145)
OP1: (51.018,91.895,91.290)
OP2: (53.467,91.954,90.487)
C4: (50.864,89.503,82.874)
O5': (51.875,90.180,89.689)
C3': (53.417,87.534,87.425)
C1': (51.238,87.450,86.503)
O4': (51.226,88.362,87.589)
C5': (52.895,89.569,88.870)
P: (52.027,91.685,90.206)
O2: (50.995,86.251,84.063)
C4': (52.441,88.214,88.371)
C2': (52.515,86.614,86.619)
O2': (52.232,85.431,87.320)
N1: (51.109,88.203,85.235)
N3: (50.876,88.170,82.870)
N4: (50.726,90.126,81.702)
C6: (51.103,89.571,85.221)
C5: (50.985,90.253,84.075)
O3': (54.401,86.793,88.145)
C2: (54.317,91.712,80.482)
OP1: (50.753,98.077,84.354)
OP2: (51.016,97.975,81.803)
C4: (53.891,92.751,78.444)
O5': (51.571,96.023,83.212)
C3': (53.745,94.380,83.954)
C1': (53.276,92.519,82.566)
O4': (52.068,93.165,82.924)
C5': (51.300,95.047,84.208)
P: (50.669,97.319,83.086)
O2: (54.872,90.836,81.168)
C4': (52.301,93.939,84.117)
C2': (54.393,93.099,83.440)
O2': (54.631,92.172,84.477)
N1: (53.478,92.635,81.113)
N3: (54.504,91.795,79.145)
N4: (54.102,92.791,77.130)
C6: (52.858,93.613,80.385)
C5: (53.035,93.706,79.061)
O3': (54.267,94.764,85.219)
OP1: (50.753,98.077,84.354)
OP2: (51.016,97.975,81.803)
C4: (53.891,92.751,78.444)
O5': (51.571,96.023,83.212)
C3': (53.745,94.380,83.954)
C1': (53.276,92.519,82.566)
O4': (52.068,93.165,82.924)
C5': (51.300,95.047,84.208)
P: (50.669,97.319,83.086)
O2: (54.872,90.836,81.168)
C4': (52.301,93.939,84.117)
C2': (54.393,93.099,83.440)
O2': (54.631,92.172,84.477)
N1: (53.478,92.635,81.113)
N3: (54.504,91.795,79.145)
N4: (54.102,92.791,77.130)
C6: (52.858,93.613,80.385)
C5: (53.035,93.706,79.061)
O3': (54.267,94.764,85.219)
Image (generated by PyMOL):