ClaRNA

Doublet info:

Details

Nucleotide types: CC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2ZUE:B35:B33

Extra

PDB:
ATOM 1 O3' U A 34 1.384 5.603 -7.791 1.00 85.60 O
ATOM 2 P C A 35 0.870 6.388 -6.483 1.00 85.91 P
ATOM 3 OP1 C A 35 0.013 7.513 -6.937 1.00 85.74 O
ATOM 4 OP2 C A 35 2.065 6.668 -5.648 1.00 85.57 O
ATOM 5 O5' C A 35 -0.045 5.340 -5.703 1.00 84.78 O
ATOM 6 C5' C A 35 -1.242 5.763 -5.049 1.00 81.94 C
ATOM 7 C4' C A 35 -1.510 4.913 -3.826 1.00 80.22 C
ATOM 8 O4' C A 35 -1.650 3.523 -4.228 1.00 81.65 O
ATOM 9 C3' C A 35 -0.410 4.874 -2.776 1.00 78.01 C
ATOM 10 O3' C A 35 -0.469 5.974 -1.880 1.00 70.91 O
ATOM 11 C2' C A 35 -0.719 3.577 -2.046 1.00 80.42 C
ATOM 12 O2' C A 35 -1.780 3.703 -1.119 1.00 80.76 O
ATOM 13 C1' C A 35 -1.135 2.678 -3.209 1.00 82.73 C
ATOM 14 N1 C A 35 0.010 1.933 -3.754 1.00 85.77 N
ATOM 15 C2 C A 35 0.673 1.020 -2.923 1.00 87.36 C
ATOM 16 O2 C A 35 0.267 0.863 -1.759 1.00 87.99 O
ATOM 17 N3 C A 35 1.735 0.336 -3.406 1.00 88.62 N
ATOM 18 C4 C A 35 2.140 0.532 -4.664 1.00 88.69 C
ATOM 19 N4 C A 35 3.194 -0.166 -5.096 1.00 88.85 N
ATOM 20 C5 C A 35 1.481 1.453 -5.534 1.00 88.04 C
ATOM 21 C6 C A 35 0.430 2.125 -5.042 1.00 86.76 C
ATOM 22 P C A 36 0.860 6.421 -1.096 1.00 67.17 P
ATOM 23 OP1 C A 36 0.955 7.897 -1.245 1.00 66.69 O
ATOM 24 OP2 C A 36 1.989 5.559 -1.542 1.00 66.67 O
ATOM 25 O5' C A 36 0.553 6.107 0.437 1.00 58.01 O
TER

ATOM 1 O3' C B 32 5.020 -4.685 -8.129 1.00 44.99 O
ATOM 2 P C B 33 5.213 -3.319 -8.947 1.00 47.19 P
ATOM 3 OP1 C B 33 3.917 -3.024 -9.612 1.00 48.42 O
ATOM 4 OP2 C B 33 6.452 -3.408 -9.760 1.00 44.32 O
ATOM 5 O5' C B 33 5.457 -2.223 -7.818 1.00 51.23 O
ATOM 6 C5' C B 33 5.818 -0.901 -8.187 1.00 58.67 C
ATOM 7 C4' C B 33 5.311 0.096 -7.176 1.00 62.32 C
ATOM 8 O4' C B 33 6.190 0.108 -6.021 1.00 62.20 O
ATOM 9 C3' C B 33 5.337 1.518 -7.716 1.00 66.15 C
ATOM 10 O3' C B 33 4.081 1.808 -8.317 1.00 71.11 O
ATOM 11 C2' C B 33 5.523 2.364 -6.462 1.00 65.42 C
ATOM 12 O2' C B 33 4.296 2.631 -5.812 1.00 67.29 O
ATOM 13 C1' C B 33 6.364 1.440 -5.581 1.00 63.44 C
ATOM 14 N1 C B 33 7.805 1.723 -5.481 1.00 61.76 N
ATOM 15 C2 C B 33 8.596 1.668 -6.629 1.00 61.56 C
ATOM 16 O2 C B 33 8.065 1.381 -7.708 1.00 63.29 O
ATOM 17 N3 C B 33 9.921 1.924 -6.532 1.00 60.88 N
ATOM 18 C4 C B 33 10.457 2.233 -5.348 1.00 60.46 C
ATOM 19 N4 C B 33 11.769 2.474 -5.295 1.00 58.85 N
ATOM 20 C5 C B 33 9.671 2.306 -4.165 1.00 60.70 C
ATOM 21 C6 C B 33 8.362 2.045 -4.276 1.00 61.89 C
ATOM 22 P U B 34 3.849 1.528 -9.883 1.00 74.73 P
ATOM 23 OP1 U B 34 3.951 0.069 -10.122 1.00 75.68 O
ATOM 24 OP2 U B 34 4.693 2.464 -10.672 1.00 75.27 O
ATOM 25 O5' U B 34 2.327 1.934 -10.085 1.00 76.70 O
TER

Atoms:
C2: (0.673,1.020,-2.923)
OP1: (0.013,7.513,-6.937)
OP2: (2.065,6.668,-5.648)
C4: (2.140,0.532,-4.664)
O5': (-0.045,5.340,-5.703)
C3': (-0.410,4.874,-2.776)
C1': (-1.135,2.678,-3.209)
O4': (-1.650,3.523,-4.228)
C5': (-1.242,5.763,-5.049)
P: (0.870,6.388,-6.483)
O2: (0.267,0.863,-1.759)
C4': (-1.510,4.913,-3.826)
C2': (-0.719,3.577,-2.046)
O2': (-1.780,3.703,-1.119)
N1: (0.010,1.933,-3.754)
N3: (1.735,0.336,-3.406)
N4: (3.194,-0.166,-5.096)
C6: (0.430,2.125,-5.042)
C5: (1.481,1.453,-5.534)
O3': (-0.469,5.974,-1.880)
C2: (8.596,1.668,-6.629)
OP1: (3.917,-3.024,-9.612)
OP2: (6.452,-3.408,-9.760)
C4: (10.457,2.233,-5.348)
O5': (5.457,-2.223,-7.818)
C3': (5.337,1.518,-7.716)
C1': (6.364,1.440,-5.581)
O4': (6.190,0.108,-6.021)
C5': (5.818,-0.901,-8.187)
P: (5.213,-3.319,-8.947)
O2: (8.065,1.381,-7.708)
C4': (5.311,0.096,-7.176)
C2': (5.523,2.364,-6.462)
O2': (4.296,2.631,-5.812)
N1: (7.805,1.723,-5.481)
N3: (9.921,1.924,-6.532)
N4: (11.769,2.474,-5.295)
C6: (8.362,2.045,-4.276)
C5: (9.671,2.306,-4.165)
O3': (4.081,1.808,-8.317)
Image (generated by PyMOL):
PyMOL image
show in jmol