Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SKZ:A39:A38
Extra
PDB:
ATOM 1 O3' C A 38 5.880 2.362 -47.438 1.00 49.21 O
ATOM 2 P C A 39 6.303 3.723 -46.698 1.00 54.82 P
ATOM 3 OP1 C A 39 7.701 3.548 -46.207 1.00 50.46 O
ATOM 4 OP2 C A 39 5.236 4.025 -45.725 1.00 48.74 O
ATOM 5 O5' C A 39 6.269 4.786 -47.873 1.00 72.02 O
ATOM 6 C5' C A 39 6.216 6.173 -47.591 1.00 68.19 C
ATOM 7 C4' C A 39 5.388 6.902 -48.612 1.00 59.82 C
ATOM 8 O4' C A 39 5.162 6.046 -49.751 1.00 59.54 O
ATOM 9 C3' C A 39 3.989 7.302 -48.177 1.00 53.65 C
ATOM 10 O3' C A 39 3.979 8.483 -47.405 1.00 50.22 O
ATOM 11 C2' C A 39 3.267 7.444 -49.500 1.00 59.06 C
ATOM 12 O2' C A 39 3.613 8.672 -50.126 1.00 61.21 O
ATOM 13 C1' C A 39 3.895 6.310 -50.300 1.00 59.74 C
ATOM 14 N1 C A 39 3.092 5.077 -50.248 1.00 55.61 N
ATOM 15 C2 C A 39 1.983 5.114 -51.075 1.00 53.00 C
ATOM 16 O2 C A 39 1.783 6.154 -51.720 1.00 57.28 O
ATOM 17 N3 C A 39 1.174 4.047 -51.145 1.00 46.52 N
ATOM 18 C4 C A 39 1.451 2.964 -50.432 1.00 43.69 C
ATOM 19 N4 C A 39 0.585 1.954 -50.580 1.00 41.03 N
ATOM 20 C5 C A 39 2.604 2.884 -49.573 1.00 37.34 C
ATOM 21 C6 C A 39 3.401 3.963 -49.510 1.00 42.15 C
ATOM 22 P U A 40 2.934 8.659 -46.215 1.00 56.22 P
ATOM 23 OP1 U A 40 3.459 9.720 -45.331 1.00 55.16 O
ATOM 24 OP2 U A 40 2.682 7.313 -45.646 1.00 51.98 O
ATOM 25 O5' U A 40 1.637 9.171 -46.972 1.00 54.32 O
TER
ATOM 1 O3' G B 37 10.778 4.187 -51.206 1.00 39.55 O
ATOM 2 P C B 38 10.393 4.071 -49.645 1.00 47.58 P
ATOM 3 OP1 C B 38 9.923 5.404 -49.214 1.00 48.56 O
ATOM 4 OP2 C B 38 11.549 3.465 -48.954 1.00 41.03 O
ATOM 5 O5' C B 38 9.180 3.046 -49.646 1.00 49.44 O
ATOM 6 C5' C B 38 7.845 3.500 -49.800 1.00 46.22 C
ATOM 7 C4' C B 38 6.866 2.362 -49.682 1.00 43.41 C
ATOM 8 O4' C B 38 7.272 1.295 -50.567 1.00 37.27 O
ATOM 9 C3' C B 38 6.772 1.696 -48.314 1.00 41.30 C
ATOM 10 O3' C B 38 5.880 2.362 -47.438 1.00 49.21 O
ATOM 11 C2' C B 38 6.318 0.283 -48.654 1.00 37.26 C
ATOM 12 O2' C B 38 4.919 0.248 -48.898 1.00 43.61 O
ATOM 13 C1' C B 38 7.024 0.047 -49.977 1.00 35.45 C
ATOM 14 N1 C B 38 8.275 -0.634 -49.816 1.00 36.67 N
ATOM 15 C2 C B 38 8.200 -2.020 -49.647 1.00 37.00 C
ATOM 16 O2 C B 38 7.084 -2.547 -49.611 1.00 42.36 O
ATOM 17 N3 C B 38 9.324 -2.722 -49.510 1.00 32.73 N
ATOM 18 C4 C B 38 10.498 -2.070 -49.570 1.00 28.09 C
ATOM 19 N4 C B 38 11.561 -2.819 -49.471 1.00 22.18 N
ATOM 20 C5 C B 38 10.608 -0.647 -49.752 1.00 20.47 C
ATOM 21 C6 C B 38 9.480 0.035 -49.874 1.00 26.36 C
ATOM 22 P C B 39 6.303 3.723 -46.698 1.00 54.82 P
ATOM 23 OP1 C B 39 7.701 3.548 -46.207 1.00 50.46 O
ATOM 24 OP2 C B 39 5.236 4.025 -45.725 1.00 48.74 O
ATOM 25 O5' C B 39 6.269 4.786 -47.873 1.00 72.02 O
TER
ATOM 2 P C A 39 6.303 3.723 -46.698 1.00 54.82 P
ATOM 3 OP1 C A 39 7.701 3.548 -46.207 1.00 50.46 O
ATOM 4 OP2 C A 39 5.236 4.025 -45.725 1.00 48.74 O
ATOM 5 O5' C A 39 6.269 4.786 -47.873 1.00 72.02 O
ATOM 6 C5' C A 39 6.216 6.173 -47.591 1.00 68.19 C
ATOM 7 C4' C A 39 5.388 6.902 -48.612 1.00 59.82 C
ATOM 8 O4' C A 39 5.162 6.046 -49.751 1.00 59.54 O
ATOM 9 C3' C A 39 3.989 7.302 -48.177 1.00 53.65 C
ATOM 10 O3' C A 39 3.979 8.483 -47.405 1.00 50.22 O
ATOM 11 C2' C A 39 3.267 7.444 -49.500 1.00 59.06 C
ATOM 12 O2' C A 39 3.613 8.672 -50.126 1.00 61.21 O
ATOM 13 C1' C A 39 3.895 6.310 -50.300 1.00 59.74 C
ATOM 14 N1 C A 39 3.092 5.077 -50.248 1.00 55.61 N
ATOM 15 C2 C A 39 1.983 5.114 -51.075 1.00 53.00 C
ATOM 16 O2 C A 39 1.783 6.154 -51.720 1.00 57.28 O
ATOM 17 N3 C A 39 1.174 4.047 -51.145 1.00 46.52 N
ATOM 18 C4 C A 39 1.451 2.964 -50.432 1.00 43.69 C
ATOM 19 N4 C A 39 0.585 1.954 -50.580 1.00 41.03 N
ATOM 20 C5 C A 39 2.604 2.884 -49.573 1.00 37.34 C
ATOM 21 C6 C A 39 3.401 3.963 -49.510 1.00 42.15 C
ATOM 22 P U A 40 2.934 8.659 -46.215 1.00 56.22 P
ATOM 23 OP1 U A 40 3.459 9.720 -45.331 1.00 55.16 O
ATOM 24 OP2 U A 40 2.682 7.313 -45.646 1.00 51.98 O
ATOM 25 O5' U A 40 1.637 9.171 -46.972 1.00 54.32 O
TER
ATOM 1 O3' G B 37 10.778 4.187 -51.206 1.00 39.55 O
ATOM 2 P C B 38 10.393 4.071 -49.645 1.00 47.58 P
ATOM 3 OP1 C B 38 9.923 5.404 -49.214 1.00 48.56 O
ATOM 4 OP2 C B 38 11.549 3.465 -48.954 1.00 41.03 O
ATOM 5 O5' C B 38 9.180 3.046 -49.646 1.00 49.44 O
ATOM 6 C5' C B 38 7.845 3.500 -49.800 1.00 46.22 C
ATOM 7 C4' C B 38 6.866 2.362 -49.682 1.00 43.41 C
ATOM 8 O4' C B 38 7.272 1.295 -50.567 1.00 37.27 O
ATOM 9 C3' C B 38 6.772 1.696 -48.314 1.00 41.30 C
ATOM 10 O3' C B 38 5.880 2.362 -47.438 1.00 49.21 O
ATOM 11 C2' C B 38 6.318 0.283 -48.654 1.00 37.26 C
ATOM 12 O2' C B 38 4.919 0.248 -48.898 1.00 43.61 O
ATOM 13 C1' C B 38 7.024 0.047 -49.977 1.00 35.45 C
ATOM 14 N1 C B 38 8.275 -0.634 -49.816 1.00 36.67 N
ATOM 15 C2 C B 38 8.200 -2.020 -49.647 1.00 37.00 C
ATOM 16 O2 C B 38 7.084 -2.547 -49.611 1.00 42.36 O
ATOM 17 N3 C B 38 9.324 -2.722 -49.510 1.00 32.73 N
ATOM 18 C4 C B 38 10.498 -2.070 -49.570 1.00 28.09 C
ATOM 19 N4 C B 38 11.561 -2.819 -49.471 1.00 22.18 N
ATOM 20 C5 C B 38 10.608 -0.647 -49.752 1.00 20.47 C
ATOM 21 C6 C B 38 9.480 0.035 -49.874 1.00 26.36 C
ATOM 22 P C B 39 6.303 3.723 -46.698 1.00 54.82 P
ATOM 23 OP1 C B 39 7.701 3.548 -46.207 1.00 50.46 O
ATOM 24 OP2 C B 39 5.236 4.025 -45.725 1.00 48.74 O
ATOM 25 O5' C B 39 6.269 4.786 -47.873 1.00 72.02 O
TER
Atoms:
C2: (1.983,5.114,-51.075)
OP1: (7.701,3.548,-46.207)
OP2: (5.236,4.025,-45.725)
C4: (1.451,2.964,-50.432)
O5': (6.269,4.786,-47.873)
C3': (3.989,7.302,-48.177)
C1': (3.895,6.310,-50.300)
O4': (5.162,6.046,-49.751)
C5': (6.216,6.173,-47.591)
P: (6.303,3.723,-46.698)
O2: (1.783,6.154,-51.720)
C4': (5.388,6.902,-48.612)
C2': (3.267,7.444,-49.500)
O2': (3.613,8.672,-50.126)
N1: (3.092,5.077,-50.248)
N3: (1.174,4.047,-51.145)
N4: (0.585,1.954,-50.580)
C6: (3.401,3.963,-49.510)
C5: (2.604,2.884,-49.573)
O3': (3.979,8.483,-47.405)
OP1: (7.701,3.548,-46.207)
OP2: (5.236,4.025,-45.725)
C4: (1.451,2.964,-50.432)
O5': (6.269,4.786,-47.873)
C3': (3.989,7.302,-48.177)
C1': (3.895,6.310,-50.300)
O4': (5.162,6.046,-49.751)
C5': (6.216,6.173,-47.591)
P: (6.303,3.723,-46.698)
O2: (1.783,6.154,-51.720)
C4': (5.388,6.902,-48.612)
C2': (3.267,7.444,-49.500)
O2': (3.613,8.672,-50.126)
N1: (3.092,5.077,-50.248)
N3: (1.174,4.047,-51.145)
N4: (0.585,1.954,-50.580)
C6: (3.401,3.963,-49.510)
C5: (2.604,2.884,-49.573)
O3': (3.979,8.483,-47.405)
C2: (8.200,-2.020,-49.647)
OP1: (9.923,5.404,-49.214)
OP2: (11.549,3.465,-48.954)
C4: (10.498,-2.070,-49.570)
O5': (9.180,3.046,-49.646)
C3': (6.772,1.696,-48.314)
C1': (7.024,0.047,-49.977)
O4': (7.272,1.295,-50.567)
C5': (7.845,3.500,-49.800)
P: (10.393,4.071,-49.645)
O2: (7.084,-2.547,-49.611)
C4': (6.866,2.362,-49.682)
C2': (6.318,0.283,-48.654)
O2': (4.919,0.248,-48.898)
N1: (8.275,-0.634,-49.816)
N3: (9.324,-2.722,-49.510)
N4: (11.561,-2.819,-49.471)
C6: (9.480,0.035,-49.874)
C5: (10.608,-0.647,-49.752)
O3': (5.880,2.362,-47.438)
OP1: (9.923,5.404,-49.214)
OP2: (11.549,3.465,-48.954)
C4: (10.498,-2.070,-49.570)
O5': (9.180,3.046,-49.646)
C3': (6.772,1.696,-48.314)
C1': (7.024,0.047,-49.977)
O4': (7.272,1.295,-50.567)
C5': (7.845,3.500,-49.800)
P: (10.393,4.071,-49.645)
O2: (7.084,-2.547,-49.611)
C4': (6.866,2.362,-49.682)
C2': (6.318,0.283,-48.654)
O2': (4.919,0.248,-48.898)
N1: (8.275,-0.634,-49.816)
N3: (9.324,-2.722,-49.510)
N4: (11.561,-2.819,-49.471)
C6: (9.480,0.035,-49.874)
C5: (10.608,-0.647,-49.752)
O3': (5.880,2.362,-47.438)
Image (generated by PyMOL):