Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11223:11221
Extra
PDB:
ATOM 1 O3' A A1222 5.750 -2.684 -20.475 1.00215.68 O
ATOM 2 P C A1223 7.097 -3.102 -21.267 1.00163.66 P
ATOM 3 OP1 C A1223 7.361 -4.527 -20.948 1.00163.58 O
ATOM 4 OP2 C A1223 8.131 -2.091 -20.924 1.00162.76 O
ATOM 5 O5' C A1223 6.686 -2.955 -22.817 1.00163.96 O
ATOM 6 C5' C A1223 5.952 -3.979 -23.489 1.00164.62 C
ATOM 7 C4' C A1223 5.755 -3.687 -24.973 1.00164.74 C
ATOM 8 O4' C A1223 4.659 -2.755 -25.191 1.00165.51 O
ATOM 9 C3' C A1223 6.895 -3.028 -25.716 1.00163.79 C
ATOM 10 O3' C A1223 7.984 -3.887 -25.957 1.00163.02 O
ATOM 11 C2' C A1223 6.200 -2.567 -26.988 1.00164.28 C
ATOM 12 O2' C A1223 5.964 -3.670 -27.852 1.00164.57 O
ATOM 13 C1' C A1223 4.853 -2.096 -26.437 1.00165.29 C
ATOM 14 N1 C A1223 4.813 -0.612 -26.239 1.00165.19 N
ATOM 15 C2 C A1223 4.909 0.278 -27.321 1.00165.03 C
ATOM 16 O2 C A1223 5.028 -0.166 -28.469 1.00164.98 O
ATOM 17 N3 C A1223 4.873 1.621 -27.105 1.00164.94 N
ATOM 18 C4 C A1223 4.746 2.115 -25.871 1.00165.00 C
ATOM 19 N4 C A1223 4.711 3.436 -25.669 1.00164.91 N
ATOM 20 C5 C A1223 4.642 1.249 -24.759 1.00165.16 C
ATOM 21 C6 C A1223 4.672 -0.064 -25.009 1.00165.25 C
ATOM 22 P C A1224 9.441 -3.260 -26.195 1.00145.06 P
ATOM 23 OP1 C A1224 10.360 -4.393 -26.493 1.00144.45 O
ATOM 24 OP2 C A1224 9.730 -2.393 -25.027 1.00144.76 O
ATOM 25 O5' C A1224 9.238 -2.360 -27.503 1.00145.14 O
TER
ATOM 1 O3' U B1220 0.494 8.700 -20.265 1.00201.96 O
ATOM 2 P C B1221 1.660 8.481 -21.342 1.00201.92 P
ATOM 3 OP1 C B1221 2.467 9.731 -21.382 1.00201.19 O
ATOM 4 OP2 C B1221 1.018 8.006 -22.594 1.00202.45 O
ATOM 5 O5' C B1221 2.503 7.304 -20.684 1.00201.36 O
ATOM 6 C5' C B1221 2.322 6.966 -19.313 1.00201.54 C
ATOM 7 C4' C B1221 2.328 5.473 -19.088 1.00201.66 C
ATOM 8 O4' C B1221 1.032 4.905 -19.468 1.00202.72 O
ATOM 9 C3' C B1221 3.389 4.684 -19.869 1.00200.90 C
ATOM 10 O3' C B1221 3.874 3.619 -19.036 1.00200.62 O
ATOM 11 C2' C B1221 2.565 4.119 -21.032 1.00201.58 C
ATOM 12 O2' C B1221 3.121 2.994 -21.682 1.00201.24 O
ATOM 13 C1' C B1221 1.253 3.799 -20.323 1.00202.64 C
ATOM 14 N1 C B1221 0.076 3.621 -21.230 1.00203.56 N
ATOM 15 C2 C B1221 -0.521 2.345 -21.275 1.00204.14 C
ATOM 16 O2 C B1221 -0.069 1.435 -20.554 1.00203.87 O
ATOM 17 N3 C B1221 -1.580 2.117 -22.094 1.00204.98 N
ATOM 18 C4 C B1221 -2.057 3.096 -22.860 1.00205.26 C
ATOM 19 N4 C B1221 -3.102 2.816 -23.647 1.00206.10 N
ATOM 20 C5 C B1221 -1.471 4.399 -22.845 1.00204.69 C
ATOM 21 C6 C B1221 -0.420 4.617 -22.032 1.00203.86 C
ATOM 22 P A B1222 4.885 2.496 -19.600 1.00215.90 P
ATOM 23 OP1 A B1222 5.907 2.258 -18.554 1.00215.14 O
ATOM 24 OP2 A B1222 5.335 2.937 -20.947 1.00215.51 O
ATOM 25 O5' A B1222 3.936 1.219 -19.731 1.00216.75 O
TER
ATOM 2 P C A1223 7.097 -3.102 -21.267 1.00163.66 P
ATOM 3 OP1 C A1223 7.361 -4.527 -20.948 1.00163.58 O
ATOM 4 OP2 C A1223 8.131 -2.091 -20.924 1.00162.76 O
ATOM 5 O5' C A1223 6.686 -2.955 -22.817 1.00163.96 O
ATOM 6 C5' C A1223 5.952 -3.979 -23.489 1.00164.62 C
ATOM 7 C4' C A1223 5.755 -3.687 -24.973 1.00164.74 C
ATOM 8 O4' C A1223 4.659 -2.755 -25.191 1.00165.51 O
ATOM 9 C3' C A1223 6.895 -3.028 -25.716 1.00163.79 C
ATOM 10 O3' C A1223 7.984 -3.887 -25.957 1.00163.02 O
ATOM 11 C2' C A1223 6.200 -2.567 -26.988 1.00164.28 C
ATOM 12 O2' C A1223 5.964 -3.670 -27.852 1.00164.57 O
ATOM 13 C1' C A1223 4.853 -2.096 -26.437 1.00165.29 C
ATOM 14 N1 C A1223 4.813 -0.612 -26.239 1.00165.19 N
ATOM 15 C2 C A1223 4.909 0.278 -27.321 1.00165.03 C
ATOM 16 O2 C A1223 5.028 -0.166 -28.469 1.00164.98 O
ATOM 17 N3 C A1223 4.873 1.621 -27.105 1.00164.94 N
ATOM 18 C4 C A1223 4.746 2.115 -25.871 1.00165.00 C
ATOM 19 N4 C A1223 4.711 3.436 -25.669 1.00164.91 N
ATOM 20 C5 C A1223 4.642 1.249 -24.759 1.00165.16 C
ATOM 21 C6 C A1223 4.672 -0.064 -25.009 1.00165.25 C
ATOM 22 P C A1224 9.441 -3.260 -26.195 1.00145.06 P
ATOM 23 OP1 C A1224 10.360 -4.393 -26.493 1.00144.45 O
ATOM 24 OP2 C A1224 9.730 -2.393 -25.027 1.00144.76 O
ATOM 25 O5' C A1224 9.238 -2.360 -27.503 1.00145.14 O
TER
ATOM 1 O3' U B1220 0.494 8.700 -20.265 1.00201.96 O
ATOM 2 P C B1221 1.660 8.481 -21.342 1.00201.92 P
ATOM 3 OP1 C B1221 2.467 9.731 -21.382 1.00201.19 O
ATOM 4 OP2 C B1221 1.018 8.006 -22.594 1.00202.45 O
ATOM 5 O5' C B1221 2.503 7.304 -20.684 1.00201.36 O
ATOM 6 C5' C B1221 2.322 6.966 -19.313 1.00201.54 C
ATOM 7 C4' C B1221 2.328 5.473 -19.088 1.00201.66 C
ATOM 8 O4' C B1221 1.032 4.905 -19.468 1.00202.72 O
ATOM 9 C3' C B1221 3.389 4.684 -19.869 1.00200.90 C
ATOM 10 O3' C B1221 3.874 3.619 -19.036 1.00200.62 O
ATOM 11 C2' C B1221 2.565 4.119 -21.032 1.00201.58 C
ATOM 12 O2' C B1221 3.121 2.994 -21.682 1.00201.24 O
ATOM 13 C1' C B1221 1.253 3.799 -20.323 1.00202.64 C
ATOM 14 N1 C B1221 0.076 3.621 -21.230 1.00203.56 N
ATOM 15 C2 C B1221 -0.521 2.345 -21.275 1.00204.14 C
ATOM 16 O2 C B1221 -0.069 1.435 -20.554 1.00203.87 O
ATOM 17 N3 C B1221 -1.580 2.117 -22.094 1.00204.98 N
ATOM 18 C4 C B1221 -2.057 3.096 -22.860 1.00205.26 C
ATOM 19 N4 C B1221 -3.102 2.816 -23.647 1.00206.10 N
ATOM 20 C5 C B1221 -1.471 4.399 -22.845 1.00204.69 C
ATOM 21 C6 C B1221 -0.420 4.617 -22.032 1.00203.86 C
ATOM 22 P A B1222 4.885 2.496 -19.600 1.00215.90 P
ATOM 23 OP1 A B1222 5.907 2.258 -18.554 1.00215.14 O
ATOM 24 OP2 A B1222 5.335 2.937 -20.947 1.00215.51 O
ATOM 25 O5' A B1222 3.936 1.219 -19.731 1.00216.75 O
TER
Atoms:
C2: (4.909,0.278,-27.321)
OP1: (7.361,-4.527,-20.948)
OP2: (8.131,-2.091,-20.924)
C4: (4.746,2.115,-25.871)
O5': (6.686,-2.955,-22.817)
C3': (6.895,-3.028,-25.716)
C1': (4.853,-2.096,-26.437)
O4': (4.659,-2.755,-25.191)
C5': (5.952,-3.979,-23.489)
P: (7.097,-3.102,-21.267)
O2: (5.028,-0.166,-28.469)
C4': (5.755,-3.687,-24.973)
C2': (6.200,-2.567,-26.988)
O2': (5.964,-3.670,-27.852)
N1: (4.813,-0.612,-26.239)
N3: (4.873,1.621,-27.105)
N4: (4.711,3.436,-25.669)
C6: (4.672,-0.064,-25.009)
C5: (4.642,1.249,-24.759)
O3': (7.984,-3.887,-25.957)
OP1: (7.361,-4.527,-20.948)
OP2: (8.131,-2.091,-20.924)
C4: (4.746,2.115,-25.871)
O5': (6.686,-2.955,-22.817)
C3': (6.895,-3.028,-25.716)
C1': (4.853,-2.096,-26.437)
O4': (4.659,-2.755,-25.191)
C5': (5.952,-3.979,-23.489)
P: (7.097,-3.102,-21.267)
O2: (5.028,-0.166,-28.469)
C4': (5.755,-3.687,-24.973)
C2': (6.200,-2.567,-26.988)
O2': (5.964,-3.670,-27.852)
N1: (4.813,-0.612,-26.239)
N3: (4.873,1.621,-27.105)
N4: (4.711,3.436,-25.669)
C6: (4.672,-0.064,-25.009)
C5: (4.642,1.249,-24.759)
O3': (7.984,-3.887,-25.957)
C2: (-0.521,2.345,-21.275)
OP1: (2.467,9.731,-21.382)
OP2: (1.018,8.006,-22.594)
C4: (-2.057,3.096,-22.860)
O5': (2.503,7.304,-20.684)
C3': (3.389,4.684,-19.869)
C1': (1.253,3.799,-20.323)
O4': (1.032,4.905,-19.468)
C5': (2.322,6.966,-19.313)
P: (1.660,8.481,-21.342)
O2: (-0.069,1.435,-20.554)
C4': (2.328,5.473,-19.088)
C2': (2.565,4.119,-21.032)
O2': (3.121,2.994,-21.682)
N1: (0.076,3.621,-21.230)
N3: (-1.580,2.117,-22.094)
N4: (-3.102,2.816,-23.647)
C6: (-0.420,4.617,-22.032)
C5: (-1.471,4.399,-22.845)
O3': (3.874,3.619,-19.036)
OP1: (2.467,9.731,-21.382)
OP2: (1.018,8.006,-22.594)
C4: (-2.057,3.096,-22.860)
O5': (2.503,7.304,-20.684)
C3': (3.389,4.684,-19.869)
C1': (1.253,3.799,-20.323)
O4': (1.032,4.905,-19.468)
C5': (2.322,6.966,-19.313)
P: (1.660,8.481,-21.342)
O2: (-0.069,1.435,-20.554)
C4': (2.328,5.473,-19.088)
C2': (2.565,4.119,-21.032)
O2': (3.121,2.994,-21.682)
N1: (0.076,3.621,-21.230)
N3: (-1.580,2.117,-22.094)
N4: (-3.102,2.816,-23.647)
C6: (-0.420,4.617,-22.032)
C5: (-1.471,4.399,-22.845)
O3': (3.874,3.619,-19.036)
Image (generated by PyMOL):