Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:165:1312
Extra
PDB:
ATOM 1 O3' A A 64 52.109 -51.405 120.117 1.00 46.79 O
ATOM 2 P C A 65 51.902 -52.324 118.834 1.00 49.24 P
ATOM 3 OP1 C A 65 50.462 -52.322 118.509 1.00 49.00 O
ATOM 4 OP2 C A 65 52.550 -53.620 119.121 1.00 49.74 O
ATOM 5 O5' C A 65 52.718 -51.551 117.715 1.00 48.76 O
ATOM 6 C5' C A 65 52.925 -50.151 117.753 1.00 48.44 C
ATOM 7 C4' C A 65 54.183 -49.785 116.997 1.00 48.24 C
ATOM 8 O4' C A 65 55.341 -49.955 117.859 1.00 48.69 O
ATOM 9 C3' C A 65 54.495 -50.657 115.792 1.00 48.11 C
ATOM 10 O3' C A 65 53.816 -50.245 114.637 1.00 47.58 O
ATOM 11 C2' C A 65 55.994 -50.535 115.669 1.00 48.20 C
ATOM 12 O2' C A 65 56.339 -49.313 115.083 1.00 47.76 O
ATOM 13 C1' C A 65 56.421 -50.510 117.133 1.00 48.71 C
ATOM 14 N1 C A 65 56.653 -51.876 117.589 1.00 49.23 N
ATOM 15 C2 C A 65 57.751 -52.510 117.065 1.00 49.36 C
ATOM 16 O2 C A 65 58.537 -51.882 116.401 1.00 49.08 O
ATOM 17 N3 C A 65 58.009 -53.794 117.285 1.00 49.81 N
ATOM 18 C4 C A 65 57.176 -54.495 118.022 1.00 50.13 C
ATOM 19 N4 C A 65 57.485 -55.778 118.252 1.00 50.60 N
ATOM 20 C5 C A 65 56.004 -53.879 118.550 1.00 50.00 C
ATOM 21 C6 C A 65 55.759 -52.586 118.299 1.00 49.54 C
ATOM 22 P C A 66 53.408 -51.303 113.511 1.00 48.30 P
ATOM 23 OP1 C A 66 52.690 -50.560 112.471 1.00 47.73 O
ATOM 24 OP2 C A 66 52.732 -52.413 114.164 1.00 48.71 O
ATOM 25 O5' C A 66 54.808 -51.769 112.968 1.00 48.40 O
TER
ATOM 1 O3' U B 311 57.360 -58.965 119.162 1.00 50.79 O
ATOM 2 P C B 312 57.911 -58.707 120.653 1.00 48.45 P
ATOM 3 OP1 C B 312 59.398 -58.838 120.599 1.00 48.67 O
ATOM 4 OP2 C B 312 57.149 -59.554 121.589 1.00 48.93 O
ATOM 5 O5' C B 312 57.534 -57.191 120.891 1.00 48.03 O
ATOM 6 C5' C B 312 56.904 -56.775 122.084 1.00 48.25 C
ATOM 7 C4' C B 312 55.843 -55.784 121.781 1.00 47.73 C
ATOM 8 O4' C B 312 54.820 -56.420 120.998 1.00 47.52 O
ATOM 9 C3' C B 312 55.132 -55.209 122.969 1.00 47.91 C
ATOM 10 O3' C B 312 55.822 -54.085 123.486 1.00 47.87 O
ATOM 11 C2' C B 312 53.757 -54.875 122.405 1.00 47.46 C
ATOM 12 O2' C B 312 53.799 -53.667 121.695 1.00 46.89 O
ATOM 13 C1' C B 312 53.564 -55.971 121.384 1.00 47.39 C
ATOM 14 N1 C B 312 52.770 -57.136 121.886 1.00 47.81 N
ATOM 15 C2 C B 312 51.410 -56.983 122.199 1.00 47.74 C
ATOM 16 O2 C B 312 50.895 -55.866 122.148 1.00 47.35 O
ATOM 17 N3 C B 312 50.664 -58.023 122.582 1.00 48.10 N
ATOM 18 C4 C B 312 51.234 -59.206 122.631 1.00 48.52 C
ATOM 19 N4 C B 312 50.455 -60.210 123.003 1.00 48.88 N
ATOM 20 C5 C B 312 52.606 -59.413 122.309 1.00 48.61 C
ATOM 21 C6 C B 312 53.331 -58.368 121.909 1.00 48.24 C
ATOM 22 P U B 313 55.882 -53.795 125.065 1.00 56.46 P
ATOM 23 OP1 U B 313 56.650 -52.528 125.245 1.00 56.29 O
ATOM 24 OP2 U B 313 56.368 -55.042 125.737 1.00 57.11 O
ATOM 25 O5' U B 313 54.367 -53.553 125.421 1.00 56.35 O
TER
ATOM 2 P C A 65 51.902 -52.324 118.834 1.00 49.24 P
ATOM 3 OP1 C A 65 50.462 -52.322 118.509 1.00 49.00 O
ATOM 4 OP2 C A 65 52.550 -53.620 119.121 1.00 49.74 O
ATOM 5 O5' C A 65 52.718 -51.551 117.715 1.00 48.76 O
ATOM 6 C5' C A 65 52.925 -50.151 117.753 1.00 48.44 C
ATOM 7 C4' C A 65 54.183 -49.785 116.997 1.00 48.24 C
ATOM 8 O4' C A 65 55.341 -49.955 117.859 1.00 48.69 O
ATOM 9 C3' C A 65 54.495 -50.657 115.792 1.00 48.11 C
ATOM 10 O3' C A 65 53.816 -50.245 114.637 1.00 47.58 O
ATOM 11 C2' C A 65 55.994 -50.535 115.669 1.00 48.20 C
ATOM 12 O2' C A 65 56.339 -49.313 115.083 1.00 47.76 O
ATOM 13 C1' C A 65 56.421 -50.510 117.133 1.00 48.71 C
ATOM 14 N1 C A 65 56.653 -51.876 117.589 1.00 49.23 N
ATOM 15 C2 C A 65 57.751 -52.510 117.065 1.00 49.36 C
ATOM 16 O2 C A 65 58.537 -51.882 116.401 1.00 49.08 O
ATOM 17 N3 C A 65 58.009 -53.794 117.285 1.00 49.81 N
ATOM 18 C4 C A 65 57.176 -54.495 118.022 1.00 50.13 C
ATOM 19 N4 C A 65 57.485 -55.778 118.252 1.00 50.60 N
ATOM 20 C5 C A 65 56.004 -53.879 118.550 1.00 50.00 C
ATOM 21 C6 C A 65 55.759 -52.586 118.299 1.00 49.54 C
ATOM 22 P C A 66 53.408 -51.303 113.511 1.00 48.30 P
ATOM 23 OP1 C A 66 52.690 -50.560 112.471 1.00 47.73 O
ATOM 24 OP2 C A 66 52.732 -52.413 114.164 1.00 48.71 O
ATOM 25 O5' C A 66 54.808 -51.769 112.968 1.00 48.40 O
TER
ATOM 1 O3' U B 311 57.360 -58.965 119.162 1.00 50.79 O
ATOM 2 P C B 312 57.911 -58.707 120.653 1.00 48.45 P
ATOM 3 OP1 C B 312 59.398 -58.838 120.599 1.00 48.67 O
ATOM 4 OP2 C B 312 57.149 -59.554 121.589 1.00 48.93 O
ATOM 5 O5' C B 312 57.534 -57.191 120.891 1.00 48.03 O
ATOM 6 C5' C B 312 56.904 -56.775 122.084 1.00 48.25 C
ATOM 7 C4' C B 312 55.843 -55.784 121.781 1.00 47.73 C
ATOM 8 O4' C B 312 54.820 -56.420 120.998 1.00 47.52 O
ATOM 9 C3' C B 312 55.132 -55.209 122.969 1.00 47.91 C
ATOM 10 O3' C B 312 55.822 -54.085 123.486 1.00 47.87 O
ATOM 11 C2' C B 312 53.757 -54.875 122.405 1.00 47.46 C
ATOM 12 O2' C B 312 53.799 -53.667 121.695 1.00 46.89 O
ATOM 13 C1' C B 312 53.564 -55.971 121.384 1.00 47.39 C
ATOM 14 N1 C B 312 52.770 -57.136 121.886 1.00 47.81 N
ATOM 15 C2 C B 312 51.410 -56.983 122.199 1.00 47.74 C
ATOM 16 O2 C B 312 50.895 -55.866 122.148 1.00 47.35 O
ATOM 17 N3 C B 312 50.664 -58.023 122.582 1.00 48.10 N
ATOM 18 C4 C B 312 51.234 -59.206 122.631 1.00 48.52 C
ATOM 19 N4 C B 312 50.455 -60.210 123.003 1.00 48.88 N
ATOM 20 C5 C B 312 52.606 -59.413 122.309 1.00 48.61 C
ATOM 21 C6 C B 312 53.331 -58.368 121.909 1.00 48.24 C
ATOM 22 P U B 313 55.882 -53.795 125.065 1.00 56.46 P
ATOM 23 OP1 U B 313 56.650 -52.528 125.245 1.00 56.29 O
ATOM 24 OP2 U B 313 56.368 -55.042 125.737 1.00 57.11 O
ATOM 25 O5' U B 313 54.367 -53.553 125.421 1.00 56.35 O
TER
Atoms:
C2: (57.751,-52.510,117.065)
OP1: (50.462,-52.322,118.509)
OP2: (52.550,-53.620,119.121)
C4: (57.176,-54.495,118.022)
O5': (52.718,-51.551,117.715)
C3': (54.495,-50.657,115.792)
C1': (56.421,-50.510,117.133)
O4': (55.341,-49.955,117.859)
C5': (52.925,-50.151,117.753)
P: (51.902,-52.324,118.834)
O2: (58.537,-51.882,116.401)
C4': (54.183,-49.785,116.997)
C2': (55.994,-50.535,115.669)
O2': (56.339,-49.313,115.083)
N1: (56.653,-51.876,117.589)
N3: (58.009,-53.794,117.285)
N4: (57.485,-55.778,118.252)
C6: (55.759,-52.586,118.299)
C5: (56.004,-53.879,118.550)
O3': (53.816,-50.245,114.637)
OP1: (50.462,-52.322,118.509)
OP2: (52.550,-53.620,119.121)
C4: (57.176,-54.495,118.022)
O5': (52.718,-51.551,117.715)
C3': (54.495,-50.657,115.792)
C1': (56.421,-50.510,117.133)
O4': (55.341,-49.955,117.859)
C5': (52.925,-50.151,117.753)
P: (51.902,-52.324,118.834)
O2: (58.537,-51.882,116.401)
C4': (54.183,-49.785,116.997)
C2': (55.994,-50.535,115.669)
O2': (56.339,-49.313,115.083)
N1: (56.653,-51.876,117.589)
N3: (58.009,-53.794,117.285)
N4: (57.485,-55.778,118.252)
C6: (55.759,-52.586,118.299)
C5: (56.004,-53.879,118.550)
O3': (53.816,-50.245,114.637)
C2: (51.410,-56.983,122.199)
OP1: (59.398,-58.838,120.599)
OP2: (57.149,-59.554,121.589)
C4: (51.234,-59.206,122.631)
O5': (57.534,-57.191,120.891)
C3': (55.132,-55.209,122.969)
C1': (53.564,-55.971,121.384)
O4': (54.820,-56.420,120.998)
C5': (56.904,-56.775,122.084)
P: (57.911,-58.707,120.653)
O2: (50.895,-55.866,122.148)
C4': (55.843,-55.784,121.781)
C2': (53.757,-54.875,122.405)
O2': (53.799,-53.667,121.695)
N1: (52.770,-57.136,121.886)
N3: (50.664,-58.023,122.582)
N4: (50.455,-60.210,123.003)
C6: (53.331,-58.368,121.909)
C5: (52.606,-59.413,122.309)
O3': (55.822,-54.085,123.486)
OP1: (59.398,-58.838,120.599)
OP2: (57.149,-59.554,121.589)
C4: (51.234,-59.206,122.631)
O5': (57.534,-57.191,120.891)
C3': (55.132,-55.209,122.969)
C1': (53.564,-55.971,121.384)
O4': (54.820,-56.420,120.998)
C5': (56.904,-56.775,122.084)
P: (57.911,-58.707,120.653)
O2: (50.895,-55.866,122.148)
C4': (55.843,-55.784,121.781)
C2': (53.757,-54.875,122.405)
O2': (53.799,-53.667,121.695)
N1: (52.770,-57.136,121.886)
N3: (50.664,-58.023,122.582)
N4: (50.455,-60.210,123.003)
C6: (53.331,-58.368,121.909)
C5: (52.606,-59.413,122.309)
O3': (55.822,-54.085,123.486)
Image (generated by PyMOL):