Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02374:02373
Extra
PDB:
ATOM 1 O3' A A2373 58.444 104.057 99.528 1.00 36.81 O
ATOM 2 P C A2374 57.344 103.939 98.361 1.00 38.73 P
ATOM 3 OP1 C A2374 57.610 102.669 97.628 1.00 39.59 O
ATOM 4 OP2 C A2374 57.304 105.228 97.620 1.00 37.20 O
ATOM 5 O5' C A2374 55.921 103.764 99.061 1.00 35.87 O
ATOM 6 C5' C A2374 55.733 103.991 100.449 1.00 34.48 C
ATOM 7 C4' C A2374 54.560 104.917 100.691 1.00 34.40 C
ATOM 8 O4' C A2374 54.437 105.050 102.134 1.00 34.22 O
ATOM 9 C3' C A2374 54.734 106.344 100.158 1.00 35.32 C
ATOM 10 O3' C A2374 54.096 106.575 98.902 1.00 36.28 O
ATOM 11 C2' C A2374 54.171 107.211 101.275 1.00 34.23 C
ATOM 12 O2' C A2374 52.767 107.326 101.246 1.00 33.61 O
ATOM 13 C1' C A2374 54.603 106.409 102.502 1.00 36.82 C
ATOM 14 N1 C A2374 56.024 106.650 102.862 1.00 36.69 N
ATOM 15 C2 C A2374 56.350 107.855 103.495 1.00 38.45 C
ATOM 16 O2 C A2374 55.437 108.659 103.766 1.00 40.83 O
ATOM 17 N3 C A2374 57.648 108.118 103.792 1.00 37.92 N
ATOM 18 C4 C A2374 58.598 107.232 103.481 1.00 37.74 C
ATOM 19 N4 C A2374 59.863 107.546 103.774 1.00 36.48 N
ATOM 20 C5 C A2374 58.293 105.988 102.852 1.00 36.58 C
ATOM 21 C6 C A2374 57.007 105.739 102.569 1.00 36.25 C
ATOM 22 P C A2375 54.607 107.774 97.949 1.00 39.07 P
ATOM 23 OP1 C A2375 53.725 107.831 96.760 1.00 39.47 O
ATOM 24 OP2 C A2375 56.075 107.648 97.771 1.00 38.57 O
ATOM 25 O5' C A2375 54.342 109.103 98.780 1.00 39.39 O
TER
ATOM 1 O3' U B2372 62.211 99.723 102.663 1.00 40.24 O
ATOM 2 P A B2373 62.493 99.942 101.097 1.00 40.81 P
ATOM 3 OP1 A B2373 62.003 98.718 100.402 1.00 41.35 O
ATOM 4 OP2 A B2373 63.896 100.386 100.906 1.00 39.79 O
ATOM 5 O5' A B2373 61.529 101.142 100.693 1.00 41.52 O
ATOM 6 C5' A B2373 60.143 101.146 101.092 1.00 39.94 C
ATOM 7 C4' A B2373 59.593 102.544 101.002 1.00 39.31 C
ATOM 8 O4' A B2373 60.482 103.430 101.744 1.00 39.31 O
ATOM 9 C3' A B2373 59.527 103.113 99.591 1.00 37.60 C
ATOM 10 O3' A B2373 58.444 104.057 99.528 1.00 36.81 O
ATOM 11 C2' A B2373 60.901 103.766 99.451 1.00 37.20 C
ATOM 12 O2' A B2373 60.970 104.748 98.441 1.00 34.75 O
ATOM 13 C1' A B2373 61.106 104.341 100.858 1.00 38.92 C
ATOM 14 N9 A B2373 62.503 104.490 101.280 1.00 39.52 N
ATOM 15 C8 A B2373 63.527 103.587 101.128 1.00 40.07 C
ATOM 16 N7 A B2373 64.676 104.004 101.600 1.00 39.00 N
ATOM 17 C5 A B2373 64.393 105.267 102.102 1.00 39.95 C
ATOM 18 C6 A B2373 65.200 106.242 102.738 1.00 40.95 C
ATOM 19 N6 A B2373 66.506 106.084 102.987 1.00 42.20 N
ATOM 20 N1 A B2373 64.611 107.397 103.112 1.00 39.28 N
ATOM 21 C2 A B2373 63.305 107.554 102.867 1.00 41.37 C
ATOM 22 N3 A B2373 62.444 106.717 102.281 1.00 42.39 N
ATOM 23 C4 A B2373 63.058 105.578 101.917 1.00 39.73 C
ATOM 24 P C B2374 57.344 103.939 98.361 1.00 38.73 P
ATOM 25 OP1 C B2374 57.610 102.669 97.628 1.00 39.59 O
ATOM 26 OP2 C B2374 57.304 105.228 97.620 1.00 37.20 O
ATOM 27 O5' C B2374 55.921 103.764 99.061 1.00 35.87 O
TER
ATOM 2 P C A2374 57.344 103.939 98.361 1.00 38.73 P
ATOM 3 OP1 C A2374 57.610 102.669 97.628 1.00 39.59 O
ATOM 4 OP2 C A2374 57.304 105.228 97.620 1.00 37.20 O
ATOM 5 O5' C A2374 55.921 103.764 99.061 1.00 35.87 O
ATOM 6 C5' C A2374 55.733 103.991 100.449 1.00 34.48 C
ATOM 7 C4' C A2374 54.560 104.917 100.691 1.00 34.40 C
ATOM 8 O4' C A2374 54.437 105.050 102.134 1.00 34.22 O
ATOM 9 C3' C A2374 54.734 106.344 100.158 1.00 35.32 C
ATOM 10 O3' C A2374 54.096 106.575 98.902 1.00 36.28 O
ATOM 11 C2' C A2374 54.171 107.211 101.275 1.00 34.23 C
ATOM 12 O2' C A2374 52.767 107.326 101.246 1.00 33.61 O
ATOM 13 C1' C A2374 54.603 106.409 102.502 1.00 36.82 C
ATOM 14 N1 C A2374 56.024 106.650 102.862 1.00 36.69 N
ATOM 15 C2 C A2374 56.350 107.855 103.495 1.00 38.45 C
ATOM 16 O2 C A2374 55.437 108.659 103.766 1.00 40.83 O
ATOM 17 N3 C A2374 57.648 108.118 103.792 1.00 37.92 N
ATOM 18 C4 C A2374 58.598 107.232 103.481 1.00 37.74 C
ATOM 19 N4 C A2374 59.863 107.546 103.774 1.00 36.48 N
ATOM 20 C5 C A2374 58.293 105.988 102.852 1.00 36.58 C
ATOM 21 C6 C A2374 57.007 105.739 102.569 1.00 36.25 C
ATOM 22 P C A2375 54.607 107.774 97.949 1.00 39.07 P
ATOM 23 OP1 C A2375 53.725 107.831 96.760 1.00 39.47 O
ATOM 24 OP2 C A2375 56.075 107.648 97.771 1.00 38.57 O
ATOM 25 O5' C A2375 54.342 109.103 98.780 1.00 39.39 O
TER
ATOM 1 O3' U B2372 62.211 99.723 102.663 1.00 40.24 O
ATOM 2 P A B2373 62.493 99.942 101.097 1.00 40.81 P
ATOM 3 OP1 A B2373 62.003 98.718 100.402 1.00 41.35 O
ATOM 4 OP2 A B2373 63.896 100.386 100.906 1.00 39.79 O
ATOM 5 O5' A B2373 61.529 101.142 100.693 1.00 41.52 O
ATOM 6 C5' A B2373 60.143 101.146 101.092 1.00 39.94 C
ATOM 7 C4' A B2373 59.593 102.544 101.002 1.00 39.31 C
ATOM 8 O4' A B2373 60.482 103.430 101.744 1.00 39.31 O
ATOM 9 C3' A B2373 59.527 103.113 99.591 1.00 37.60 C
ATOM 10 O3' A B2373 58.444 104.057 99.528 1.00 36.81 O
ATOM 11 C2' A B2373 60.901 103.766 99.451 1.00 37.20 C
ATOM 12 O2' A B2373 60.970 104.748 98.441 1.00 34.75 O
ATOM 13 C1' A B2373 61.106 104.341 100.858 1.00 38.92 C
ATOM 14 N9 A B2373 62.503 104.490 101.280 1.00 39.52 N
ATOM 15 C8 A B2373 63.527 103.587 101.128 1.00 40.07 C
ATOM 16 N7 A B2373 64.676 104.004 101.600 1.00 39.00 N
ATOM 17 C5 A B2373 64.393 105.267 102.102 1.00 39.95 C
ATOM 18 C6 A B2373 65.200 106.242 102.738 1.00 40.95 C
ATOM 19 N6 A B2373 66.506 106.084 102.987 1.00 42.20 N
ATOM 20 N1 A B2373 64.611 107.397 103.112 1.00 39.28 N
ATOM 21 C2 A B2373 63.305 107.554 102.867 1.00 41.37 C
ATOM 22 N3 A B2373 62.444 106.717 102.281 1.00 42.39 N
ATOM 23 C4 A B2373 63.058 105.578 101.917 1.00 39.73 C
ATOM 24 P C B2374 57.344 103.939 98.361 1.00 38.73 P
ATOM 25 OP1 C B2374 57.610 102.669 97.628 1.00 39.59 O
ATOM 26 OP2 C B2374 57.304 105.228 97.620 1.00 37.20 O
ATOM 27 O5' C B2374 55.921 103.764 99.061 1.00 35.87 O
TER
Atoms:
C2: (56.350,107.855,103.495)
OP1: (57.610,102.669,97.628)
OP2: (57.304,105.228,97.620)
C4: (58.598,107.232,103.481)
O5': (55.921,103.764,99.061)
C3': (54.734,106.344,100.158)
C1': (54.603,106.409,102.502)
O4': (54.437,105.050,102.134)
C5': (55.733,103.991,100.449)
P: (57.344,103.939,98.361)
O2: (55.437,108.659,103.766)
C4': (54.560,104.917,100.691)
C2': (54.171,107.211,101.275)
O2': (52.767,107.326,101.246)
N1: (56.024,106.650,102.862)
N3: (57.648,108.118,103.792)
N4: (59.863,107.546,103.774)
C6: (57.007,105.739,102.569)
C5: (58.293,105.988,102.852)
O3': (54.096,106.575,98.902)
OP1: (57.610,102.669,97.628)
OP2: (57.304,105.228,97.620)
C4: (58.598,107.232,103.481)
O5': (55.921,103.764,99.061)
C3': (54.734,106.344,100.158)
C1': (54.603,106.409,102.502)
O4': (54.437,105.050,102.134)
C5': (55.733,103.991,100.449)
P: (57.344,103.939,98.361)
O2: (55.437,108.659,103.766)
C4': (54.560,104.917,100.691)
C2': (54.171,107.211,101.275)
O2': (52.767,107.326,101.246)
N1: (56.024,106.650,102.862)
N3: (57.648,108.118,103.792)
N4: (59.863,107.546,103.774)
C6: (57.007,105.739,102.569)
C5: (58.293,105.988,102.852)
O3': (54.096,106.575,98.902)
OP1: (62.003,98.718,100.402)
OP2: (63.896,100.386,100.906)
C3': (59.527,103.113,99.591)
C1': (61.106,104.341,100.858)
C5': (60.143,101.146,101.092)
O4': (60.482,103.430,101.744)
C8: (63.527,103.587,101.128)
O2': (60.970,104.748,98.441)
C6: (65.200,106.242,102.738)
C5: (64.393,105.267,102.102)
C4: (63.058,105.578,101.917)
P: (62.493,99.942,101.097)
C4': (59.593,102.544,101.002)
C2': (60.901,103.766,99.451)
C2: (63.305,107.554,102.867)
N1: (64.611,107.397,103.112)
N3: (62.444,106.717,102.281)
N6: (66.506,106.084,102.987)
N7: (64.676,104.004,101.600)
N9: (62.503,104.490,101.280)
O5': (61.529,101.142,100.693)
O3': (58.444,104.057,99.528)
OP2: (63.896,100.386,100.906)
C3': (59.527,103.113,99.591)
C1': (61.106,104.341,100.858)
C5': (60.143,101.146,101.092)
O4': (60.482,103.430,101.744)
C8: (63.527,103.587,101.128)
O2': (60.970,104.748,98.441)
C6: (65.200,106.242,102.738)
C5: (64.393,105.267,102.102)
C4: (63.058,105.578,101.917)
P: (62.493,99.942,101.097)
C4': (59.593,102.544,101.002)
C2': (60.901,103.766,99.451)
C2: (63.305,107.554,102.867)
N1: (64.611,107.397,103.112)
N3: (62.444,106.717,102.281)
N6: (66.506,106.084,102.987)
N7: (64.676,104.004,101.600)
N9: (62.503,104.490,101.280)
O5': (61.529,101.142,100.693)
O3': (58.444,104.057,99.528)
Image (generated by PyMOL):