Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01520:01518
Extra
PDB:
ATOM 1 P C A1520 83.908 210.534 104.779 1.00 90.39 P
ATOM 2 OP1 C A1520 84.597 211.854 104.786 1.00 91.65 O
ATOM 3 OP2 C A1520 83.387 209.992 103.492 1.00 91.38 O
ATOM 4 O5' C A1520 84.923 209.472 105.401 1.00 89.10 O
ATOM 5 C5' C A1520 86.212 209.270 104.784 1.00 87.79 C
ATOM 6 C4' C A1520 86.629 207.820 104.861 1.00 86.62 C
ATOM 7 O4' C A1520 85.479 206.958 105.005 1.00 86.91 O
ATOM 8 C3' C A1520 87.329 207.331 103.606 1.00 85.59 C
ATOM 9 O3' C A1520 88.712 207.652 103.667 1.00 85.25 O
ATOM 10 C2' C A1520 87.087 205.828 103.644 1.00 85.38 C
ATOM 11 O2' C A1520 88.034 205.143 104.433 1.00 84.63 O
ATOM 12 C1' C A1520 85.705 205.745 104.309 1.00 86.84 C
ATOM 13 N1 C A1520 84.516 205.457 103.466 1.00 87.61 N
ATOM 14 C2 C A1520 84.631 204.611 102.342 1.00 87.44 C
ATOM 15 O2 C A1520 85.735 204.117 102.060 1.00 89.05 O
ATOM 16 N3 C A1520 83.528 204.351 101.599 1.00 86.29 N
ATOM 17 C4 C A1520 82.351 204.883 101.937 1.00 85.89 C
ATOM 18 N4 C A1520 81.289 204.586 101.187 1.00 85.31 N
ATOM 19 C5 C A1520 82.209 205.741 103.063 1.00 86.40 C
ATOM 20 C6 C A1520 83.302 206.000 103.790 1.00 87.06 C
ATOM 21 P G A1521 89.335 208.726 102.645 1.00 85.10 P
ATOM 22 OP1 G A1521 90.550 209.277 103.293 1.00 85.00 O
ATOM 23 OP2 G A1521 88.263 209.654 102.189 1.00 84.75 O
ATOM 24 O5' G A1521 89.797 207.842 101.403 1.00 84.50 O
TER
ATOM 1 O3' C B1517 76.229 201.812 98.009 1.00 76.13 O
ATOM 2 P A B1518 75.137 202.644 98.833 1.00 76.39 P
ATOM 3 OP1 A B1518 74.079 201.717 99.296 1.00 76.76 O
ATOM 4 OP2 A B1518 74.765 203.847 98.053 1.00 75.97 O
ATOM 5 O5' A B1518 75.930 203.097 100.129 1.00 77.88 O
ATOM 6 C5' A B1518 75.490 204.233 100.879 1.00 81.36 C
ATOM 7 C4' A B1518 76.661 205.112 101.207 1.00 80.21 C
ATOM 8 O4' A B1518 77.565 205.146 100.068 1.00 79.73 O
ATOM 9 C3' A B1518 76.310 206.563 101.469 1.00 79.08 C
ATOM 10 O3' A B1518 75.819 206.765 102.797 1.00 73.49 O
ATOM 11 C2' A B1518 77.634 207.253 101.149 1.00 80.11 C
ATOM 12 O2' A B1518 78.603 207.103 102.165 1.00 81.53 O
ATOM 13 C1' A B1518 78.113 206.441 99.941 1.00 80.72 C
ATOM 14 N9 A B1518 77.693 206.995 98.654 1.00 82.59 N
ATOM 15 C8 A B1518 76.576 206.672 97.919 1.00 83.21 C
ATOM 16 N7 A B1518 76.453 207.362 96.811 1.00 84.24 N
ATOM 17 C5 A B1518 77.566 208.192 96.810 1.00 84.69 C
ATOM 18 C6 A B1518 78.018 209.172 95.902 1.00 84.86 C
ATOM 19 N6 A B1518 77.372 209.495 94.779 1.00 84.67 N
ATOM 20 N1 A B1518 79.171 209.818 96.194 1.00 85.02 N
ATOM 21 C2 A B1518 79.817 209.495 97.323 1.00 85.34 C
ATOM 22 N3 A B1518 79.493 208.595 98.254 1.00 85.46 N
ATOM 23 C4 A B1518 78.343 207.971 97.935 1.00 84.19 C
TER
ATOM 2 OP1 C A1520 84.597 211.854 104.786 1.00 91.65 O
ATOM 3 OP2 C A1520 83.387 209.992 103.492 1.00 91.38 O
ATOM 4 O5' C A1520 84.923 209.472 105.401 1.00 89.10 O
ATOM 5 C5' C A1520 86.212 209.270 104.784 1.00 87.79 C
ATOM 6 C4' C A1520 86.629 207.820 104.861 1.00 86.62 C
ATOM 7 O4' C A1520 85.479 206.958 105.005 1.00 86.91 O
ATOM 8 C3' C A1520 87.329 207.331 103.606 1.00 85.59 C
ATOM 9 O3' C A1520 88.712 207.652 103.667 1.00 85.25 O
ATOM 10 C2' C A1520 87.087 205.828 103.644 1.00 85.38 C
ATOM 11 O2' C A1520 88.034 205.143 104.433 1.00 84.63 O
ATOM 12 C1' C A1520 85.705 205.745 104.309 1.00 86.84 C
ATOM 13 N1 C A1520 84.516 205.457 103.466 1.00 87.61 N
ATOM 14 C2 C A1520 84.631 204.611 102.342 1.00 87.44 C
ATOM 15 O2 C A1520 85.735 204.117 102.060 1.00 89.05 O
ATOM 16 N3 C A1520 83.528 204.351 101.599 1.00 86.29 N
ATOM 17 C4 C A1520 82.351 204.883 101.937 1.00 85.89 C
ATOM 18 N4 C A1520 81.289 204.586 101.187 1.00 85.31 N
ATOM 19 C5 C A1520 82.209 205.741 103.063 1.00 86.40 C
ATOM 20 C6 C A1520 83.302 206.000 103.790 1.00 87.06 C
ATOM 21 P G A1521 89.335 208.726 102.645 1.00 85.10 P
ATOM 22 OP1 G A1521 90.550 209.277 103.293 1.00 85.00 O
ATOM 23 OP2 G A1521 88.263 209.654 102.189 1.00 84.75 O
ATOM 24 O5' G A1521 89.797 207.842 101.403 1.00 84.50 O
TER
ATOM 1 O3' C B1517 76.229 201.812 98.009 1.00 76.13 O
ATOM 2 P A B1518 75.137 202.644 98.833 1.00 76.39 P
ATOM 3 OP1 A B1518 74.079 201.717 99.296 1.00 76.76 O
ATOM 4 OP2 A B1518 74.765 203.847 98.053 1.00 75.97 O
ATOM 5 O5' A B1518 75.930 203.097 100.129 1.00 77.88 O
ATOM 6 C5' A B1518 75.490 204.233 100.879 1.00 81.36 C
ATOM 7 C4' A B1518 76.661 205.112 101.207 1.00 80.21 C
ATOM 8 O4' A B1518 77.565 205.146 100.068 1.00 79.73 O
ATOM 9 C3' A B1518 76.310 206.563 101.469 1.00 79.08 C
ATOM 10 O3' A B1518 75.819 206.765 102.797 1.00 73.49 O
ATOM 11 C2' A B1518 77.634 207.253 101.149 1.00 80.11 C
ATOM 12 O2' A B1518 78.603 207.103 102.165 1.00 81.53 O
ATOM 13 C1' A B1518 78.113 206.441 99.941 1.00 80.72 C
ATOM 14 N9 A B1518 77.693 206.995 98.654 1.00 82.59 N
ATOM 15 C8 A B1518 76.576 206.672 97.919 1.00 83.21 C
ATOM 16 N7 A B1518 76.453 207.362 96.811 1.00 84.24 N
ATOM 17 C5 A B1518 77.566 208.192 96.810 1.00 84.69 C
ATOM 18 C6 A B1518 78.018 209.172 95.902 1.00 84.86 C
ATOM 19 N6 A B1518 77.372 209.495 94.779 1.00 84.67 N
ATOM 20 N1 A B1518 79.171 209.818 96.194 1.00 85.02 N
ATOM 21 C2 A B1518 79.817 209.495 97.323 1.00 85.34 C
ATOM 22 N3 A B1518 79.493 208.595 98.254 1.00 85.46 N
ATOM 23 C4 A B1518 78.343 207.971 97.935 1.00 84.19 C
TER
Atoms:
C2: (84.631,204.611,102.342)
OP1: (84.597,211.854,104.786)
OP2: (83.387,209.992,103.492)
C4: (82.351,204.883,101.937)
O5': (84.923,209.472,105.401)
C3': (87.329,207.331,103.606)
C1': (85.705,205.745,104.309)
O4': (85.479,206.958,105.005)
C5': (86.212,209.270,104.784)
P: (83.908,210.534,104.779)
O2: (85.735,204.117,102.060)
C4': (86.629,207.820,104.861)
C2': (87.087,205.828,103.644)
O2': (88.034,205.143,104.433)
N1: (84.516,205.457,103.466)
N3: (83.528,204.351,101.599)
N4: (81.289,204.586,101.187)
C6: (83.302,206.000,103.790)
C5: (82.209,205.741,103.063)
O3': (88.712,207.652,103.667)
OP1: (84.597,211.854,104.786)
OP2: (83.387,209.992,103.492)
C4: (82.351,204.883,101.937)
O5': (84.923,209.472,105.401)
C3': (87.329,207.331,103.606)
C1': (85.705,205.745,104.309)
O4': (85.479,206.958,105.005)
C5': (86.212,209.270,104.784)
P: (83.908,210.534,104.779)
O2: (85.735,204.117,102.060)
C4': (86.629,207.820,104.861)
C2': (87.087,205.828,103.644)
O2': (88.034,205.143,104.433)
N1: (84.516,205.457,103.466)
N3: (83.528,204.351,101.599)
N4: (81.289,204.586,101.187)
C6: (83.302,206.000,103.790)
C5: (82.209,205.741,103.063)
O3': (88.712,207.652,103.667)
OP1: (74.079,201.717,99.296)
OP2: (74.765,203.847,98.053)
C3': (76.310,206.563,101.469)
C1': (78.113,206.441,99.941)
C5': (75.490,204.233,100.879)
O4': (77.565,205.146,100.068)
C8: (76.576,206.672,97.919)
O2': (78.603,207.103,102.165)
C6: (78.018,209.172,95.902)
C5: (77.566,208.192,96.810)
C4: (78.343,207.971,97.935)
P: (75.137,202.644,98.833)
C4': (76.661,205.112,101.207)
C2': (77.634,207.253,101.149)
C2: (79.817,209.495,97.323)
N1: (79.171,209.818,96.194)
N3: (79.493,208.595,98.254)
N6: (77.372,209.495,94.779)
N7: (76.453,207.362,96.811)
N9: (77.693,206.995,98.654)
O5': (75.930,203.097,100.129)
O3': (75.819,206.765,102.797)
OP2: (74.765,203.847,98.053)
C3': (76.310,206.563,101.469)
C1': (78.113,206.441,99.941)
C5': (75.490,204.233,100.879)
O4': (77.565,205.146,100.068)
C8: (76.576,206.672,97.919)
O2': (78.603,207.103,102.165)
C6: (78.018,209.172,95.902)
C5: (77.566,208.192,96.810)
C4: (78.343,207.971,97.935)
P: (75.137,202.644,98.833)
C4': (76.661,205.112,101.207)
C2': (77.634,207.253,101.149)
C2: (79.817,209.495,97.323)
N1: (79.171,209.818,96.194)
N3: (79.493,208.595,98.254)
N6: (77.372,209.495,94.779)
N7: (76.453,207.362,96.811)
N9: (77.693,206.995,98.654)
O5': (75.930,203.097,100.129)
O3': (75.819,206.765,102.797)
Image (generated by PyMOL):