Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDJ:S4:S2
Extra
PDB:
ATOM 1 O3' U A 3 -15.713 106.292 5.637 0.60 74.30 O
ATOM 2 P C A 4 -14.881 107.257 6.624 0.60 75.81 P
ATOM 3 OP1 C A 4 -15.197 106.781 8.010 0.60 77.26 O
ATOM 4 OP2 C A 4 -15.210 108.665 6.261 0.60 73.56 O
ATOM 5 O5' C A 4 -13.337 106.947 6.322 0.60 72.94 O
ATOM 6 C5' C A 4 -12.656 105.889 7.037 0.60 67.47 C
ATOM 7 C4' C A 4 -11.152 106.078 6.990 0.60 64.25 C
ATOM 8 O4' C A 4 -10.668 105.751 5.653 0.60 60.86 O
ATOM 9 C3' C A 4 -10.653 107.486 7.316 0.60 63.04 C
ATOM 10 O3' C A 4 -9.386 107.420 7.985 0.60 66.79 O
ATOM 11 C2' C A 4 -10.409 108.094 5.925 0.60 60.04 C
ATOM 12 O2' C A 4 -9.358 109.054 5.943 0.60 58.59 O
ATOM 13 C1' C A 4 -10.007 106.866 5.093 0.60 55.83 C
ATOM 14 N1 C A 4 -10.380 106.915 3.657 0.60 50.02 N
ATOM 15 C2 C A 4 -9.431 107.348 2.724 0.60 48.00 C
ATOM 16 O2 C A 4 -8.315 107.668 3.129 0.60 48.33 O
ATOM 17 N3 C A 4 -9.748 107.397 1.411 0.60 44.19 N
ATOM 18 C4 C A 4 -10.958 107.017 1.010 0.60 44.03 C
ATOM 19 N4 C A 4 -11.216 107.058 -0.304 0.60 41.63 N
ATOM 20 C5 C A 4 -11.959 106.568 1.934 0.60 44.19 C
ATOM 21 C6 C A 4 -11.629 106.538 3.239 0.60 46.35 C
ATOM 22 P A A 5 -9.304 107.011 9.552 0.60 66.70 P
ATOM 23 OP1 A A 5 -10.247 105.901 9.887 0.60 67.93 O
ATOM 24 OP2 A A 5 -9.340 108.245 10.403 0.60 67.74 O
ATOM 25 O5' A A 5 -7.807 106.471 9.668 0.60 65.54 O
TER
ATOM 1 O3' G B 1 -10.997 103.145 -4.923 0.60 66.15 O
ATOM 2 P A B 2 -11.279 104.598 -4.267 0.60 63.76 P
ATOM 3 OP1 A B 2 -12.291 105.340 -5.039 0.60 61.12 O
ATOM 4 OP2 A B 2 -9.932 105.237 -4.054 0.60 63.58 O
ATOM 5 O5' A B 2 -11.853 104.296 -2.810 0.60 63.79 O
ATOM 6 C5' A B 2 -12.829 103.253 -2.605 0.60 63.51 C
ATOM 7 C4' A B 2 -12.985 102.970 -1.130 0.60 62.33 C
ATOM 8 O4' A B 2 -11.772 102.361 -0.600 0.60 60.99 O
ATOM 9 C3' A B 2 -13.192 104.214 -0.280 0.60 62.47 C
ATOM 10 O3' A B 2 -14.556 104.564 -0.268 0.60 62.76 O
ATOM 11 C2' A B 2 -12.658 103.815 1.101 0.60 61.17 C
ATOM 12 O2' A B 2 -13.624 103.199 1.949 0.60 60.06 O
ATOM 13 C1' A B 2 -11.549 102.818 0.730 0.60 59.80 C
ATOM 14 N9 A B 2 -10.219 103.427 0.797 0.60 56.99 N
ATOM 15 C8 A B 2 -9.402 103.869 -0.225 0.60 56.58 C
ATOM 16 N7 A B 2 -8.270 104.400 0.193 0.60 56.05 N
ATOM 17 C5 A B 2 -8.349 104.293 1.579 0.60 54.63 C
ATOM 18 C6 A B 2 -7.473 104.676 2.618 0.60 52.75 C
ATOM 19 N6 A B 2 -6.299 105.290 2.423 0.60 52.11 N
ATOM 20 N1 A B 2 -7.857 104.417 3.886 0.60 52.81 N
ATOM 21 C2 A B 2 -9.039 103.821 4.097 0.60 53.02 C
ATOM 22 N3 A B 2 -9.948 103.422 3.214 0.60 53.62 N
ATOM 23 C4 A B 2 -9.538 103.690 1.961 0.60 55.54 C
ATOM 24 P U B 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 25 OP1 U B 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 26 OP2 U B 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 27 O5' U B 3 -15.027 106.272 1.492 0.60 65.41 O
TER
ATOM 2 P C A 4 -14.881 107.257 6.624 0.60 75.81 P
ATOM 3 OP1 C A 4 -15.197 106.781 8.010 0.60 77.26 O
ATOM 4 OP2 C A 4 -15.210 108.665 6.261 0.60 73.56 O
ATOM 5 O5' C A 4 -13.337 106.947 6.322 0.60 72.94 O
ATOM 6 C5' C A 4 -12.656 105.889 7.037 0.60 67.47 C
ATOM 7 C4' C A 4 -11.152 106.078 6.990 0.60 64.25 C
ATOM 8 O4' C A 4 -10.668 105.751 5.653 0.60 60.86 O
ATOM 9 C3' C A 4 -10.653 107.486 7.316 0.60 63.04 C
ATOM 10 O3' C A 4 -9.386 107.420 7.985 0.60 66.79 O
ATOM 11 C2' C A 4 -10.409 108.094 5.925 0.60 60.04 C
ATOM 12 O2' C A 4 -9.358 109.054 5.943 0.60 58.59 O
ATOM 13 C1' C A 4 -10.007 106.866 5.093 0.60 55.83 C
ATOM 14 N1 C A 4 -10.380 106.915 3.657 0.60 50.02 N
ATOM 15 C2 C A 4 -9.431 107.348 2.724 0.60 48.00 C
ATOM 16 O2 C A 4 -8.315 107.668 3.129 0.60 48.33 O
ATOM 17 N3 C A 4 -9.748 107.397 1.411 0.60 44.19 N
ATOM 18 C4 C A 4 -10.958 107.017 1.010 0.60 44.03 C
ATOM 19 N4 C A 4 -11.216 107.058 -0.304 0.60 41.63 N
ATOM 20 C5 C A 4 -11.959 106.568 1.934 0.60 44.19 C
ATOM 21 C6 C A 4 -11.629 106.538 3.239 0.60 46.35 C
ATOM 22 P A A 5 -9.304 107.011 9.552 0.60 66.70 P
ATOM 23 OP1 A A 5 -10.247 105.901 9.887 0.60 67.93 O
ATOM 24 OP2 A A 5 -9.340 108.245 10.403 0.60 67.74 O
ATOM 25 O5' A A 5 -7.807 106.471 9.668 0.60 65.54 O
TER
ATOM 1 O3' G B 1 -10.997 103.145 -4.923 0.60 66.15 O
ATOM 2 P A B 2 -11.279 104.598 -4.267 0.60 63.76 P
ATOM 3 OP1 A B 2 -12.291 105.340 -5.039 0.60 61.12 O
ATOM 4 OP2 A B 2 -9.932 105.237 -4.054 0.60 63.58 O
ATOM 5 O5' A B 2 -11.853 104.296 -2.810 0.60 63.79 O
ATOM 6 C5' A B 2 -12.829 103.253 -2.605 0.60 63.51 C
ATOM 7 C4' A B 2 -12.985 102.970 -1.130 0.60 62.33 C
ATOM 8 O4' A B 2 -11.772 102.361 -0.600 0.60 60.99 O
ATOM 9 C3' A B 2 -13.192 104.214 -0.280 0.60 62.47 C
ATOM 10 O3' A B 2 -14.556 104.564 -0.268 0.60 62.76 O
ATOM 11 C2' A B 2 -12.658 103.815 1.101 0.60 61.17 C
ATOM 12 O2' A B 2 -13.624 103.199 1.949 0.60 60.06 O
ATOM 13 C1' A B 2 -11.549 102.818 0.730 0.60 59.80 C
ATOM 14 N9 A B 2 -10.219 103.427 0.797 0.60 56.99 N
ATOM 15 C8 A B 2 -9.402 103.869 -0.225 0.60 56.58 C
ATOM 16 N7 A B 2 -8.270 104.400 0.193 0.60 56.05 N
ATOM 17 C5 A B 2 -8.349 104.293 1.579 0.60 54.63 C
ATOM 18 C6 A B 2 -7.473 104.676 2.618 0.60 52.75 C
ATOM 19 N6 A B 2 -6.299 105.290 2.423 0.60 52.11 N
ATOM 20 N1 A B 2 -7.857 104.417 3.886 0.60 52.81 N
ATOM 21 C2 A B 2 -9.039 103.821 4.097 0.60 53.02 C
ATOM 22 N3 A B 2 -9.948 103.422 3.214 0.60 53.62 N
ATOM 23 C4 A B 2 -9.538 103.690 1.961 0.60 55.54 C
ATOM 24 P U B 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 25 OP1 U B 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 26 OP2 U B 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 27 O5' U B 3 -15.027 106.272 1.492 0.60 65.41 O
TER
Atoms:
C2: (-9.431,107.348,2.724)
OP1: (-15.197,106.781,8.010)
OP2: (-15.210,108.665,6.261)
C4: (-10.958,107.017,1.010)
O5': (-13.337,106.947,6.322)
C3': (-10.653,107.486,7.316)
C1': (-10.007,106.866,5.093)
O4': (-10.668,105.751,5.653)
C5': (-12.656,105.889,7.037)
P: (-14.881,107.257,6.624)
O2: (-8.315,107.668,3.129)
C4': (-11.152,106.078,6.990)
C2': (-10.409,108.094,5.925)
O2': (-9.358,109.054,5.943)
N1: (-10.380,106.915,3.657)
N3: (-9.748,107.397,1.411)
N4: (-11.216,107.058,-0.304)
C6: (-11.629,106.538,3.239)
C5: (-11.959,106.568,1.934)
O3': (-9.386,107.420,7.985)
OP1: (-15.197,106.781,8.010)
OP2: (-15.210,108.665,6.261)
C4: (-10.958,107.017,1.010)
O5': (-13.337,106.947,6.322)
C3': (-10.653,107.486,7.316)
C1': (-10.007,106.866,5.093)
O4': (-10.668,105.751,5.653)
C5': (-12.656,105.889,7.037)
P: (-14.881,107.257,6.624)
O2: (-8.315,107.668,3.129)
C4': (-11.152,106.078,6.990)
C2': (-10.409,108.094,5.925)
O2': (-9.358,109.054,5.943)
N1: (-10.380,106.915,3.657)
N3: (-9.748,107.397,1.411)
N4: (-11.216,107.058,-0.304)
C6: (-11.629,106.538,3.239)
C5: (-11.959,106.568,1.934)
O3': (-9.386,107.420,7.985)
OP1: (-12.291,105.340,-5.039)
OP2: (-9.932,105.237,-4.054)
C3': (-13.192,104.214,-0.280)
C1': (-11.549,102.818,0.730)
C5': (-12.829,103.253,-2.605)
O4': (-11.772,102.361,-0.600)
C8: (-9.402,103.869,-0.225)
O2': (-13.624,103.199,1.949)
C6: (-7.473,104.676,2.618)
C5: (-8.349,104.293,1.579)
C4: (-9.538,103.690,1.961)
P: (-11.279,104.598,-4.267)
C4': (-12.985,102.970,-1.130)
C2': (-12.658,103.815,1.101)
C2: (-9.039,103.821,4.097)
N1: (-7.857,104.417,3.886)
N3: (-9.948,103.422,3.214)
N6: (-6.299,105.290,2.423)
N7: (-8.270,104.400,0.193)
N9: (-10.219,103.427,0.797)
O5': (-11.853,104.296,-2.810)
O3': (-14.556,104.564,-0.268)
OP2: (-9.932,105.237,-4.054)
C3': (-13.192,104.214,-0.280)
C1': (-11.549,102.818,0.730)
C5': (-12.829,103.253,-2.605)
O4': (-11.772,102.361,-0.600)
C8: (-9.402,103.869,-0.225)
O2': (-13.624,103.199,1.949)
C6: (-7.473,104.676,2.618)
C5: (-8.349,104.293,1.579)
C4: (-9.538,103.690,1.961)
P: (-11.279,104.598,-4.267)
C4': (-12.985,102.970,-1.130)
C2': (-12.658,103.815,1.101)
C2: (-9.039,103.821,4.097)
N1: (-7.857,104.417,3.886)
N3: (-9.948,103.422,3.214)
N6: (-6.299,105.290,2.423)
N7: (-8.270,104.400,0.193)
N9: (-10.219,103.427,0.797)
O5': (-11.853,104.296,-2.810)
O3': (-14.556,104.564,-0.268)
Image (generated by PyMOL):