Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2873:A2872
Extra
PDB:
ATOM 1 O3' A A2872 -14.544 -85.977 -40.015 1.00 0.01 O
ATOM 2 P C A2873 -13.007 -85.663 -40.343 1.00 0.01 P
ATOM 3 OP1 C A2873 -12.937 -85.285 -41.761 1.00 0.01 O
ATOM 4 OP2 C A2873 -12.199 -86.813 -39.860 1.00 0.01 O
ATOM 5 O5' C A2873 -12.731 -84.402 -39.439 1.00 0.01 O
ATOM 6 C5' C A2873 -11.788 -84.462 -38.394 1.00 0.01 C
ATOM 7 C4' C A2873 -11.879 -83.263 -37.492 1.00 0.01 C
ATOM 8 O4' C A2873 -12.516 -82.156 -38.179 1.00 0.01 O
ATOM 9 C3' C A2873 -12.696 -83.453 -36.256 1.00 0.01 C
ATOM 10 O3' C A2873 -11.959 -84.091 -35.234 1.00 0.01 O
ATOM 11 C2' C A2873 -13.110 -82.032 -35.926 1.00 0.01 C
ATOM 12 O2' C A2873 -12.039 -81.335 -35.344 1.00 0.01 O
ATOM 13 C1' C A2873 -13.343 -81.454 -37.303 1.00 0.01 C
ATOM 14 N1 C A2873 -14.727 -81.629 -37.754 1.00 0.01 N
ATOM 15 C2 C A2873 -15.775 -81.035 -37.107 1.00 0.01 C
ATOM 16 O2 C A2873 -15.550 -80.353 -36.122 1.00 0.01 O
ATOM 17 N3 C A2873 -17.025 -81.212 -37.536 1.00 0.01 N
ATOM 18 C4 C A2873 -17.273 -81.935 -38.593 1.00 0.01 C
ATOM 19 N4 C A2873 -18.535 -82.081 -38.974 1.00 0.01 N
ATOM 20 C5 C A2873 -16.230 -82.545 -39.299 1.00 0.01 C
ATOM 21 C6 C A2873 -14.996 -82.370 -38.847 1.00 0.01 C
ATOM 22 P U A2874 -12.525 -85.419 -34.567 1.00 0.01 P
ATOM 23 OP1 U A2874 -11.408 -86.119 -33.901 1.00 0.01 O
ATOM 24 OP2 U A2874 -13.301 -86.119 -35.607 1.00 0.01 O
ATOM 25 O5' U A2874 -13.483 -84.834 -33.482 1.00 0.01 O
TER
ATOM 1 O3' U B2871 -16.869 -83.458 -46.128 1.00 0.01 O
ATOM 2 P A B2872 -17.219 -84.879 -45.516 1.00 0.01 P
ATOM 3 OP1 A B2872 -16.279 -85.859 -46.098 1.00 0.01 O
ATOM 4 OP2 A B2872 -18.661 -85.089 -45.708 1.00 0.01 O
ATOM 5 O5' A B2872 -16.917 -84.698 -43.972 1.00 0.01 O
ATOM 6 C5' A B2872 -16.263 -85.736 -43.268 1.00 0.01 C
ATOM 7 C4' A B2872 -15.991 -85.375 -41.844 1.00 0.01 C
ATOM 8 O4' A B2872 -17.239 -85.012 -41.216 1.00 0.01 O
ATOM 9 C3' A B2872 -15.414 -86.509 -41.007 1.00 0.01 C
ATOM 10 O3' A B2872 -14.544 -85.977 -40.015 1.00 0.01 O
ATOM 11 C2' A B2872 -16.651 -87.083 -40.335 1.00 0.01 C
ATOM 12 O2' A B2872 -16.387 -87.777 -39.136 1.00 0.01 O
ATOM 13 C1' A B2872 -17.435 -85.818 -40.079 1.00 0.01 C
ATOM 14 N9 A B2872 -18.869 -85.985 -39.886 1.00 0.01 N
ATOM 15 C8 A B2872 -19.555 -85.539 -38.781 1.00 0.01 C
ATOM 16 N7 A B2872 -20.849 -85.711 -38.840 1.00 0.01 N
ATOM 17 C5 A B2872 -21.017 -86.285 -40.084 1.00 0.01 C
ATOM 18 C6 A B2872 -22.160 -86.697 -40.754 1.00 0.01 C
ATOM 19 N6 A B2872 -23.385 -86.611 -40.257 1.00 0.01 N
ATOM 20 N1 A B2872 -21.987 -87.209 -41.969 1.00 0.01 N
ATOM 21 C2 A B2872 -20.769 -87.308 -42.462 1.00 0.01 C
ATOM 22 N3 A B2872 -19.628 -86.960 -41.932 1.00 0.01 N
ATOM 23 C4 A B2872 -19.816 -86.448 -40.736 1.00 0.01 C
ATOM 24 P C B2873 -13.007 -85.663 -40.343 1.00 0.01 P
ATOM 25 OP1 C B2873 -12.937 -85.285 -41.761 1.00 0.01 O
ATOM 26 OP2 C B2873 -12.199 -86.813 -39.860 1.00 0.01 O
ATOM 27 O5' C B2873 -12.731 -84.402 -39.439 1.00 0.01 O
TER
ATOM 2 P C A2873 -13.007 -85.663 -40.343 1.00 0.01 P
ATOM 3 OP1 C A2873 -12.937 -85.285 -41.761 1.00 0.01 O
ATOM 4 OP2 C A2873 -12.199 -86.813 -39.860 1.00 0.01 O
ATOM 5 O5' C A2873 -12.731 -84.402 -39.439 1.00 0.01 O
ATOM 6 C5' C A2873 -11.788 -84.462 -38.394 1.00 0.01 C
ATOM 7 C4' C A2873 -11.879 -83.263 -37.492 1.00 0.01 C
ATOM 8 O4' C A2873 -12.516 -82.156 -38.179 1.00 0.01 O
ATOM 9 C3' C A2873 -12.696 -83.453 -36.256 1.00 0.01 C
ATOM 10 O3' C A2873 -11.959 -84.091 -35.234 1.00 0.01 O
ATOM 11 C2' C A2873 -13.110 -82.032 -35.926 1.00 0.01 C
ATOM 12 O2' C A2873 -12.039 -81.335 -35.344 1.00 0.01 O
ATOM 13 C1' C A2873 -13.343 -81.454 -37.303 1.00 0.01 C
ATOM 14 N1 C A2873 -14.727 -81.629 -37.754 1.00 0.01 N
ATOM 15 C2 C A2873 -15.775 -81.035 -37.107 1.00 0.01 C
ATOM 16 O2 C A2873 -15.550 -80.353 -36.122 1.00 0.01 O
ATOM 17 N3 C A2873 -17.025 -81.212 -37.536 1.00 0.01 N
ATOM 18 C4 C A2873 -17.273 -81.935 -38.593 1.00 0.01 C
ATOM 19 N4 C A2873 -18.535 -82.081 -38.974 1.00 0.01 N
ATOM 20 C5 C A2873 -16.230 -82.545 -39.299 1.00 0.01 C
ATOM 21 C6 C A2873 -14.996 -82.370 -38.847 1.00 0.01 C
ATOM 22 P U A2874 -12.525 -85.419 -34.567 1.00 0.01 P
ATOM 23 OP1 U A2874 -11.408 -86.119 -33.901 1.00 0.01 O
ATOM 24 OP2 U A2874 -13.301 -86.119 -35.607 1.00 0.01 O
ATOM 25 O5' U A2874 -13.483 -84.834 -33.482 1.00 0.01 O
TER
ATOM 1 O3' U B2871 -16.869 -83.458 -46.128 1.00 0.01 O
ATOM 2 P A B2872 -17.219 -84.879 -45.516 1.00 0.01 P
ATOM 3 OP1 A B2872 -16.279 -85.859 -46.098 1.00 0.01 O
ATOM 4 OP2 A B2872 -18.661 -85.089 -45.708 1.00 0.01 O
ATOM 5 O5' A B2872 -16.917 -84.698 -43.972 1.00 0.01 O
ATOM 6 C5' A B2872 -16.263 -85.736 -43.268 1.00 0.01 C
ATOM 7 C4' A B2872 -15.991 -85.375 -41.844 1.00 0.01 C
ATOM 8 O4' A B2872 -17.239 -85.012 -41.216 1.00 0.01 O
ATOM 9 C3' A B2872 -15.414 -86.509 -41.007 1.00 0.01 C
ATOM 10 O3' A B2872 -14.544 -85.977 -40.015 1.00 0.01 O
ATOM 11 C2' A B2872 -16.651 -87.083 -40.335 1.00 0.01 C
ATOM 12 O2' A B2872 -16.387 -87.777 -39.136 1.00 0.01 O
ATOM 13 C1' A B2872 -17.435 -85.818 -40.079 1.00 0.01 C
ATOM 14 N9 A B2872 -18.869 -85.985 -39.886 1.00 0.01 N
ATOM 15 C8 A B2872 -19.555 -85.539 -38.781 1.00 0.01 C
ATOM 16 N7 A B2872 -20.849 -85.711 -38.840 1.00 0.01 N
ATOM 17 C5 A B2872 -21.017 -86.285 -40.084 1.00 0.01 C
ATOM 18 C6 A B2872 -22.160 -86.697 -40.754 1.00 0.01 C
ATOM 19 N6 A B2872 -23.385 -86.611 -40.257 1.00 0.01 N
ATOM 20 N1 A B2872 -21.987 -87.209 -41.969 1.00 0.01 N
ATOM 21 C2 A B2872 -20.769 -87.308 -42.462 1.00 0.01 C
ATOM 22 N3 A B2872 -19.628 -86.960 -41.932 1.00 0.01 N
ATOM 23 C4 A B2872 -19.816 -86.448 -40.736 1.00 0.01 C
ATOM 24 P C B2873 -13.007 -85.663 -40.343 1.00 0.01 P
ATOM 25 OP1 C B2873 -12.937 -85.285 -41.761 1.00 0.01 O
ATOM 26 OP2 C B2873 -12.199 -86.813 -39.860 1.00 0.01 O
ATOM 27 O5' C B2873 -12.731 -84.402 -39.439 1.00 0.01 O
TER
Atoms:
C2: (-15.775,-81.035,-37.107)
OP1: (-12.937,-85.285,-41.761)
OP2: (-12.199,-86.813,-39.860)
C4: (-17.273,-81.935,-38.593)
O5': (-12.731,-84.402,-39.439)
C3': (-12.696,-83.453,-36.256)
C1': (-13.343,-81.454,-37.303)
O4': (-12.516,-82.156,-38.179)
C5': (-11.788,-84.462,-38.394)
P: (-13.007,-85.663,-40.343)
O2: (-15.550,-80.353,-36.122)
C4': (-11.879,-83.263,-37.492)
C2': (-13.110,-82.032,-35.926)
O2': (-12.039,-81.335,-35.344)
N1: (-14.727,-81.629,-37.754)
N3: (-17.025,-81.212,-37.536)
N4: (-18.535,-82.081,-38.974)
C6: (-14.996,-82.370,-38.847)
C5: (-16.230,-82.545,-39.299)
O3': (-11.959,-84.091,-35.234)
OP1: (-12.937,-85.285,-41.761)
OP2: (-12.199,-86.813,-39.860)
C4: (-17.273,-81.935,-38.593)
O5': (-12.731,-84.402,-39.439)
C3': (-12.696,-83.453,-36.256)
C1': (-13.343,-81.454,-37.303)
O4': (-12.516,-82.156,-38.179)
C5': (-11.788,-84.462,-38.394)
P: (-13.007,-85.663,-40.343)
O2: (-15.550,-80.353,-36.122)
C4': (-11.879,-83.263,-37.492)
C2': (-13.110,-82.032,-35.926)
O2': (-12.039,-81.335,-35.344)
N1: (-14.727,-81.629,-37.754)
N3: (-17.025,-81.212,-37.536)
N4: (-18.535,-82.081,-38.974)
C6: (-14.996,-82.370,-38.847)
C5: (-16.230,-82.545,-39.299)
O3': (-11.959,-84.091,-35.234)
OP1: (-16.279,-85.859,-46.098)
OP2: (-18.661,-85.089,-45.708)
C3': (-15.414,-86.509,-41.007)
C1': (-17.435,-85.818,-40.079)
C5': (-16.263,-85.736,-43.268)
O4': (-17.239,-85.012,-41.216)
C8: (-19.555,-85.539,-38.781)
O2': (-16.387,-87.777,-39.136)
C6: (-22.160,-86.697,-40.754)
C5: (-21.017,-86.285,-40.084)
C4: (-19.816,-86.448,-40.736)
P: (-17.219,-84.879,-45.516)
C4': (-15.991,-85.375,-41.844)
C2': (-16.651,-87.083,-40.335)
C2: (-20.769,-87.308,-42.462)
N1: (-21.987,-87.209,-41.969)
N3: (-19.628,-86.960,-41.932)
N6: (-23.385,-86.611,-40.257)
N7: (-20.849,-85.711,-38.840)
N9: (-18.869,-85.985,-39.886)
O5': (-16.917,-84.698,-43.972)
O3': (-14.544,-85.977,-40.015)
OP2: (-18.661,-85.089,-45.708)
C3': (-15.414,-86.509,-41.007)
C1': (-17.435,-85.818,-40.079)
C5': (-16.263,-85.736,-43.268)
O4': (-17.239,-85.012,-41.216)
C8: (-19.555,-85.539,-38.781)
O2': (-16.387,-87.777,-39.136)
C6: (-22.160,-86.697,-40.754)
C5: (-21.017,-86.285,-40.084)
C4: (-19.816,-86.448,-40.736)
P: (-17.219,-84.879,-45.516)
C4': (-15.991,-85.375,-41.844)
C2': (-16.651,-87.083,-40.335)
C2: (-20.769,-87.308,-42.462)
N1: (-21.987,-87.209,-41.969)
N3: (-19.628,-86.960,-41.932)
N6: (-23.385,-86.611,-40.257)
N7: (-20.849,-85.711,-38.840)
N9: (-18.869,-85.985,-39.886)
O5': (-16.917,-84.698,-43.972)
O3': (-14.544,-85.977,-40.015)
Image (generated by PyMOL):