Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2352:A2350
Extra
PDB:
ATOM 1 O3' A A2351 -109.922 -69.137 37.636 1.00 0.01 O
ATOM 2 P C A2352 -111.271 -68.501 38.185 1.00 0.01 P
ATOM 3 OP1 C A2352 -112.056 -69.598 38.786 1.00 0.01 O
ATOM 4 OP2 C A2352 -111.868 -67.730 37.089 1.00 0.01 O
ATOM 5 O5' C A2352 -110.740 -67.524 39.292 1.00 0.01 O
ATOM 6 C5' C A2352 -109.778 -67.962 40.221 1.00 0.01 C
ATOM 7 C4' C A2352 -108.822 -66.863 40.571 1.00 0.01 C
ATOM 8 O4' C A2352 -108.190 -66.389 39.380 1.00 0.01 O
ATOM 9 C3' C A2352 -109.429 -65.616 41.179 1.00 0.01 C
ATOM 10 O3' C A2352 -109.672 -65.759 42.553 1.00 0.01 O
ATOM 11 C2' C A2352 -108.384 -64.572 40.873 1.00 0.01 C
ATOM 12 O2' C A2352 -107.315 -64.659 41.797 1.00 0.01 O
ATOM 13 C1' C A2352 -107.869 -65.040 39.526 1.00 0.01 C
ATOM 14 N1 C A2352 -108.424 -64.302 38.397 1.00 0.01 N
ATOM 15 C2 C A2352 -107.986 -63.024 38.232 1.00 0.01 C
ATOM 16 O2 C A2352 -107.256 -62.619 39.119 1.00 0.01 O
ATOM 17 N3 C A2352 -108.351 -62.275 37.189 1.00 0.01 N
ATOM 18 C4 C A2352 -109.123 -62.817 36.288 1.00 0.01 C
ATOM 19 N4 C A2352 -109.478 -62.077 35.258 1.00 0.01 N
ATOM 20 C5 C A2352 -109.572 -64.149 36.399 1.00 0.01 C
ATOM 21 C6 C A2352 -109.187 -64.871 37.455 1.00 0.01 C
ATOM 22 P G A2353 -110.641 -64.762 43.303 1.00 0.01 P
ATOM 23 OP1 G A2353 -110.595 -65.101 44.741 1.00 0.01 O
ATOM 24 OP2 G A2353 -111.931 -64.818 42.608 1.00 0.01 O
ATOM 25 O5' G A2353 -109.945 -63.367 43.053 1.00 0.01 O
TER
ATOM 1 O3' U B2349 -118.797 -66.479 31.675 1.00 0.01 O
ATOM 2 P G B2350 -117.601 -67.483 31.409 1.00 0.01 P
ATOM 3 OP1 G B2350 -117.703 -67.920 30.011 1.00 0.01 O
ATOM 4 OP2 G B2350 -117.632 -68.494 32.471 1.00 0.01 O
ATOM 5 O5' G B2350 -116.337 -66.561 31.589 1.00 0.01 O
ATOM 6 C5' G B2350 -115.196 -67.021 32.289 1.00 0.01 C
ATOM 7 C4' G B2350 -114.661 -65.960 33.203 1.00 0.01 C
ATOM 8 O4' G B2350 -115.602 -65.718 34.272 1.00 0.01 O
ATOM 9 C3' G B2350 -113.384 -66.289 33.944 1.00 0.01 C
ATOM 10 O3' G B2350 -112.226 -66.254 33.130 1.00 0.01 O
ATOM 11 C2' G B2350 -113.405 -65.266 35.079 1.00 0.01 C
ATOM 12 O2' G B2350 -112.982 -63.972 34.647 1.00 0.01 O
ATOM 13 C1' G B2350 -114.907 -65.225 35.401 1.00 0.01 C
ATOM 14 N9 G B2350 -115.227 -66.069 36.551 1.00 0.18 N
ATOM 15 C8 G B2350 -116.021 -67.169 36.632 1.00 0.18 C
ATOM 16 N7 G B2350 -116.064 -67.679 37.837 1.00 0.18 N
ATOM 17 C5 G B2350 -115.225 -66.867 38.541 1.00 0.18 C
ATOM 18 C6 G B2350 -114.863 -66.938 39.872 1.00 0.18 C
ATOM 19 O6 G B2350 -115.226 -67.763 40.699 1.00 0.18 O
ATOM 20 N1 G B2350 -113.991 -65.925 40.223 1.00 0.18 N
ATOM 21 C2 G B2350 -113.515 -64.973 39.369 1.00 0.18 C
ATOM 22 N2 G B2350 -112.682 -64.075 39.908 1.00 0.18 N
ATOM 23 N3 G B2350 -113.843 -64.903 38.095 1.00 0.18 N
ATOM 24 C4 G B2350 -114.699 -65.878 37.777 1.00 0.18 C
ATOM 25 P A B2351 -111.603 -67.627 32.592 1.00 0.01 P
ATOM 26 OP1 A B2351 -111.046 -67.366 31.262 1.00 0.01 O
ATOM 27 OP2 A B2351 -112.636 -68.660 32.730 1.00 0.01 O
ATOM 28 O5' A B2351 -110.447 -67.908 33.615 1.00 0.01 O
TER
ATOM 2 P C A2352 -111.271 -68.501 38.185 1.00 0.01 P
ATOM 3 OP1 C A2352 -112.056 -69.598 38.786 1.00 0.01 O
ATOM 4 OP2 C A2352 -111.868 -67.730 37.089 1.00 0.01 O
ATOM 5 O5' C A2352 -110.740 -67.524 39.292 1.00 0.01 O
ATOM 6 C5' C A2352 -109.778 -67.962 40.221 1.00 0.01 C
ATOM 7 C4' C A2352 -108.822 -66.863 40.571 1.00 0.01 C
ATOM 8 O4' C A2352 -108.190 -66.389 39.380 1.00 0.01 O
ATOM 9 C3' C A2352 -109.429 -65.616 41.179 1.00 0.01 C
ATOM 10 O3' C A2352 -109.672 -65.759 42.553 1.00 0.01 O
ATOM 11 C2' C A2352 -108.384 -64.572 40.873 1.00 0.01 C
ATOM 12 O2' C A2352 -107.315 -64.659 41.797 1.00 0.01 O
ATOM 13 C1' C A2352 -107.869 -65.040 39.526 1.00 0.01 C
ATOM 14 N1 C A2352 -108.424 -64.302 38.397 1.00 0.01 N
ATOM 15 C2 C A2352 -107.986 -63.024 38.232 1.00 0.01 C
ATOM 16 O2 C A2352 -107.256 -62.619 39.119 1.00 0.01 O
ATOM 17 N3 C A2352 -108.351 -62.275 37.189 1.00 0.01 N
ATOM 18 C4 C A2352 -109.123 -62.817 36.288 1.00 0.01 C
ATOM 19 N4 C A2352 -109.478 -62.077 35.258 1.00 0.01 N
ATOM 20 C5 C A2352 -109.572 -64.149 36.399 1.00 0.01 C
ATOM 21 C6 C A2352 -109.187 -64.871 37.455 1.00 0.01 C
ATOM 22 P G A2353 -110.641 -64.762 43.303 1.00 0.01 P
ATOM 23 OP1 G A2353 -110.595 -65.101 44.741 1.00 0.01 O
ATOM 24 OP2 G A2353 -111.931 -64.818 42.608 1.00 0.01 O
ATOM 25 O5' G A2353 -109.945 -63.367 43.053 1.00 0.01 O
TER
ATOM 1 O3' U B2349 -118.797 -66.479 31.675 1.00 0.01 O
ATOM 2 P G B2350 -117.601 -67.483 31.409 1.00 0.01 P
ATOM 3 OP1 G B2350 -117.703 -67.920 30.011 1.00 0.01 O
ATOM 4 OP2 G B2350 -117.632 -68.494 32.471 1.00 0.01 O
ATOM 5 O5' G B2350 -116.337 -66.561 31.589 1.00 0.01 O
ATOM 6 C5' G B2350 -115.196 -67.021 32.289 1.00 0.01 C
ATOM 7 C4' G B2350 -114.661 -65.960 33.203 1.00 0.01 C
ATOM 8 O4' G B2350 -115.602 -65.718 34.272 1.00 0.01 O
ATOM 9 C3' G B2350 -113.384 -66.289 33.944 1.00 0.01 C
ATOM 10 O3' G B2350 -112.226 -66.254 33.130 1.00 0.01 O
ATOM 11 C2' G B2350 -113.405 -65.266 35.079 1.00 0.01 C
ATOM 12 O2' G B2350 -112.982 -63.972 34.647 1.00 0.01 O
ATOM 13 C1' G B2350 -114.907 -65.225 35.401 1.00 0.01 C
ATOM 14 N9 G B2350 -115.227 -66.069 36.551 1.00 0.18 N
ATOM 15 C8 G B2350 -116.021 -67.169 36.632 1.00 0.18 C
ATOM 16 N7 G B2350 -116.064 -67.679 37.837 1.00 0.18 N
ATOM 17 C5 G B2350 -115.225 -66.867 38.541 1.00 0.18 C
ATOM 18 C6 G B2350 -114.863 -66.938 39.872 1.00 0.18 C
ATOM 19 O6 G B2350 -115.226 -67.763 40.699 1.00 0.18 O
ATOM 20 N1 G B2350 -113.991 -65.925 40.223 1.00 0.18 N
ATOM 21 C2 G B2350 -113.515 -64.973 39.369 1.00 0.18 C
ATOM 22 N2 G B2350 -112.682 -64.075 39.908 1.00 0.18 N
ATOM 23 N3 G B2350 -113.843 -64.903 38.095 1.00 0.18 N
ATOM 24 C4 G B2350 -114.699 -65.878 37.777 1.00 0.18 C
ATOM 25 P A B2351 -111.603 -67.627 32.592 1.00 0.01 P
ATOM 26 OP1 A B2351 -111.046 -67.366 31.262 1.00 0.01 O
ATOM 27 OP2 A B2351 -112.636 -68.660 32.730 1.00 0.01 O
ATOM 28 O5' A B2351 -110.447 -67.908 33.615 1.00 0.01 O
TER
Atoms:
C2: (-107.986,-63.024,38.232)
OP1: (-112.056,-69.598,38.786)
OP2: (-111.868,-67.730,37.089)
C4: (-109.123,-62.817,36.288)
O5': (-110.740,-67.524,39.292)
C3': (-109.429,-65.616,41.179)
C1': (-107.869,-65.040,39.526)
O4': (-108.190,-66.389,39.380)
C5': (-109.778,-67.962,40.221)
P: (-111.271,-68.501,38.185)
O2: (-107.256,-62.619,39.119)
C4': (-108.822,-66.863,40.571)
C2': (-108.384,-64.572,40.873)
O2': (-107.315,-64.659,41.797)
N1: (-108.424,-64.302,38.397)
N3: (-108.351,-62.275,37.189)
N4: (-109.478,-62.077,35.258)
C6: (-109.187,-64.871,37.455)
C5: (-109.572,-64.149,36.399)
O3': (-109.672,-65.759,42.553)
OP1: (-112.056,-69.598,38.786)
OP2: (-111.868,-67.730,37.089)
C4: (-109.123,-62.817,36.288)
O5': (-110.740,-67.524,39.292)
C3': (-109.429,-65.616,41.179)
C1': (-107.869,-65.040,39.526)
O4': (-108.190,-66.389,39.380)
C5': (-109.778,-67.962,40.221)
P: (-111.271,-68.501,38.185)
O2: (-107.256,-62.619,39.119)
C4': (-108.822,-66.863,40.571)
C2': (-108.384,-64.572,40.873)
O2': (-107.315,-64.659,41.797)
N1: (-108.424,-64.302,38.397)
N3: (-108.351,-62.275,37.189)
N4: (-109.478,-62.077,35.258)
C6: (-109.187,-64.871,37.455)
C5: (-109.572,-64.149,36.399)
O3': (-109.672,-65.759,42.553)
OP1: (-117.703,-67.920,30.011)
OP2: (-117.632,-68.494,32.471)
C3': (-113.384,-66.289,33.944)
C1': (-114.907,-65.225,35.401)
C5': (-115.196,-67.021,32.289)
O6: (-115.226,-67.763,40.699)
O4': (-115.602,-65.718,34.272)
C8: (-116.021,-67.169,36.632)
C2: (-113.515,-64.973,39.369)
C6: (-114.863,-66.938,39.872)
C5: (-115.225,-66.867,38.541)
C4: (-114.699,-65.878,37.777)
P: (-117.601,-67.483,31.409)
C4': (-114.661,-65.960,33.203)
C2': (-113.405,-65.266,35.079)
O2': (-112.982,-63.972,34.647)
N1: (-113.991,-65.925,40.223)
N2: (-112.682,-64.075,39.908)
N3: (-113.843,-64.903,38.095)
N7: (-116.064,-67.679,37.837)
N9: (-115.227,-66.069,36.551)
O5': (-116.337,-66.561,31.589)
O3': (-112.226,-66.254,33.130)
OP2: (-117.632,-68.494,32.471)
C3': (-113.384,-66.289,33.944)
C1': (-114.907,-65.225,35.401)
C5': (-115.196,-67.021,32.289)
O6: (-115.226,-67.763,40.699)
O4': (-115.602,-65.718,34.272)
C8: (-116.021,-67.169,36.632)
C2: (-113.515,-64.973,39.369)
C6: (-114.863,-66.938,39.872)
C5: (-115.225,-66.867,38.541)
C4: (-114.699,-65.878,37.777)
P: (-117.601,-67.483,31.409)
C4': (-114.661,-65.960,33.203)
C2': (-113.405,-65.266,35.079)
O2': (-112.982,-63.972,34.647)
N1: (-113.991,-65.925,40.223)
N2: (-112.682,-64.075,39.908)
N3: (-113.843,-64.903,38.095)
N7: (-116.064,-67.679,37.837)
N9: (-115.227,-66.069,36.551)
O5': (-116.337,-66.561,31.589)
O3': (-112.226,-66.254,33.130)
Image (generated by PyMOL):