Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2415:A2384
Extra
PDB:
ATOM 1 O3' G A2414 -108.897 -36.752 44.641 1.00 0.01 O
ATOM 2 P C A2415 -109.389 -37.305 43.240 1.00 6.72 P
ATOM 3 OP1 C A2415 -109.651 -36.137 42.360 1.00 6.72 O
ATOM 4 OP2 C A2415 -110.491 -38.262 43.515 1.00 6.72 O
ATOM 5 O5' C A2415 -108.122 -38.090 42.710 1.00 6.72 O
ATOM 6 C5' C A2415 -108.275 -39.013 41.652 1.00 6.72 C
ATOM 7 C4' C A2415 -107.020 -39.189 40.864 1.00 6.72 C
ATOM 8 O4' C A2415 -106.076 -39.946 41.642 1.00 6.72 O
ATOM 9 C3' C A2415 -107.214 -39.933 39.556 1.00 6.72 C
ATOM 10 O3' C A2415 -107.146 -39.052 38.457 1.00 6.72 O
ATOM 11 C2' C A2415 -106.136 -41.017 39.516 1.00 6.72 C
ATOM 12 O2' C A2415 -105.112 -40.693 38.586 1.00 6.72 O
ATOM 13 C1' C A2415 -105.546 -41.013 40.919 1.00 6.72 C
ATOM 14 N1 C A2415 -105.830 -42.255 41.643 1.00 6.27 N
ATOM 15 C2 C A2415 -104.770 -42.723 42.375 1.00 6.27 C
ATOM 16 O2 C A2415 -103.749 -42.019 42.299 1.00 6.27 O
ATOM 17 N3 C A2415 -104.896 -43.864 43.089 1.00 6.27 N
ATOM 18 C4 C A2415 -106.054 -44.489 43.045 1.00 6.27 C
ATOM 19 N4 C A2415 -106.180 -45.603 43.733 1.00 6.27 N
ATOM 20 C5 C A2415 -107.154 -44.020 42.304 1.00 6.27 C
ATOM 21 C6 C A2415 -107.017 -42.899 41.611 1.00 6.27 C
ATOM 22 P U A2416 -108.459 -38.609 37.672 1.00 15.95 P
ATOM 23 OP1 U A2416 -108.623 -37.142 37.904 1.00 15.95 O
ATOM 24 OP2 U A2416 -109.550 -39.531 38.085 1.00 15.95 O
ATOM 25 O5' U A2416 -108.053 -38.885 36.145 1.00 15.95 O
TER
ATOM 1 O3' U B2383 -115.621 -47.751 39.057 1.00 0.01 O
ATOM 2 P G B2384 -114.631 -47.329 40.228 1.00 0.01 P
ATOM 3 OP1 G B2384 -114.987 -48.155 41.404 1.00 0.01 O
ATOM 4 OP2 G B2384 -114.682 -45.848 40.353 1.00 0.01 O
ATOM 5 O5' G B2384 -113.214 -47.753 39.642 1.00 0.01 O
ATOM 6 C5' G B2384 -112.516 -48.880 40.149 1.00 0.01 C
ATOM 7 C4' G B2384 -111.056 -48.609 40.256 1.00 0.01 C
ATOM 8 O4' G B2384 -110.560 -48.240 38.932 1.00 0.01 O
ATOM 9 C3' G B2384 -110.691 -47.441 41.189 1.00 0.01 C
ATOM 10 O3' G B2384 -109.515 -47.727 41.954 1.00 0.01 O
ATOM 11 C2' G B2384 -110.364 -46.352 40.195 1.00 0.01 C
ATOM 12 O2' G B2384 -109.512 -45.346 40.670 1.00 0.01 O
ATOM 13 C1' G B2384 -109.707 -47.161 39.111 1.00 0.01 C
ATOM 14 N9 G B2384 -109.467 -46.415 37.876 1.00 0.01 N
ATOM 15 C8 G B2384 -110.130 -45.330 37.364 1.00 0.01 C
ATOM 16 N7 G B2384 -109.534 -44.768 36.343 1.00 0.01 N
ATOM 17 C5 G B2384 -108.360 -45.481 36.231 1.00 0.01 C
ATOM 18 C6 G B2384 -107.280 -45.358 35.336 1.00 0.01 C
ATOM 19 O6 G B2384 -107.112 -44.566 34.417 1.00 0.01 O
ATOM 20 N1 G B2384 -106.286 -46.284 35.550 1.00 0.01 N
ATOM 21 C2 G B2384 -106.309 -47.230 36.515 1.00 0.01 C
ATOM 22 N2 G B2384 -105.246 -48.043 36.554 1.00 0.01 N
ATOM 23 N3 G B2384 -107.303 -47.350 37.382 1.00 0.01 N
ATOM 24 C4 G B2384 -108.289 -46.455 37.183 1.00 0.01 C
ATOM 25 P A B2385 -109.594 -48.456 43.395 1.00 0.01 P
ATOM 26 OP1 A B2385 -110.964 -48.314 43.910 1.00 0.01 O
ATOM 27 OP2 A B2385 -108.471 -47.956 44.222 1.00 0.01 O
ATOM 28 O5' A B2385 -109.341 -49.941 43.001 1.00 0.01 O
TER
ATOM 2 P C A2415 -109.389 -37.305 43.240 1.00 6.72 P
ATOM 3 OP1 C A2415 -109.651 -36.137 42.360 1.00 6.72 O
ATOM 4 OP2 C A2415 -110.491 -38.262 43.515 1.00 6.72 O
ATOM 5 O5' C A2415 -108.122 -38.090 42.710 1.00 6.72 O
ATOM 6 C5' C A2415 -108.275 -39.013 41.652 1.00 6.72 C
ATOM 7 C4' C A2415 -107.020 -39.189 40.864 1.00 6.72 C
ATOM 8 O4' C A2415 -106.076 -39.946 41.642 1.00 6.72 O
ATOM 9 C3' C A2415 -107.214 -39.933 39.556 1.00 6.72 C
ATOM 10 O3' C A2415 -107.146 -39.052 38.457 1.00 6.72 O
ATOM 11 C2' C A2415 -106.136 -41.017 39.516 1.00 6.72 C
ATOM 12 O2' C A2415 -105.112 -40.693 38.586 1.00 6.72 O
ATOM 13 C1' C A2415 -105.546 -41.013 40.919 1.00 6.72 C
ATOM 14 N1 C A2415 -105.830 -42.255 41.643 1.00 6.27 N
ATOM 15 C2 C A2415 -104.770 -42.723 42.375 1.00 6.27 C
ATOM 16 O2 C A2415 -103.749 -42.019 42.299 1.00 6.27 O
ATOM 17 N3 C A2415 -104.896 -43.864 43.089 1.00 6.27 N
ATOM 18 C4 C A2415 -106.054 -44.489 43.045 1.00 6.27 C
ATOM 19 N4 C A2415 -106.180 -45.603 43.733 1.00 6.27 N
ATOM 20 C5 C A2415 -107.154 -44.020 42.304 1.00 6.27 C
ATOM 21 C6 C A2415 -107.017 -42.899 41.611 1.00 6.27 C
ATOM 22 P U A2416 -108.459 -38.609 37.672 1.00 15.95 P
ATOM 23 OP1 U A2416 -108.623 -37.142 37.904 1.00 15.95 O
ATOM 24 OP2 U A2416 -109.550 -39.531 38.085 1.00 15.95 O
ATOM 25 O5' U A2416 -108.053 -38.885 36.145 1.00 15.95 O
TER
ATOM 1 O3' U B2383 -115.621 -47.751 39.057 1.00 0.01 O
ATOM 2 P G B2384 -114.631 -47.329 40.228 1.00 0.01 P
ATOM 3 OP1 G B2384 -114.987 -48.155 41.404 1.00 0.01 O
ATOM 4 OP2 G B2384 -114.682 -45.848 40.353 1.00 0.01 O
ATOM 5 O5' G B2384 -113.214 -47.753 39.642 1.00 0.01 O
ATOM 6 C5' G B2384 -112.516 -48.880 40.149 1.00 0.01 C
ATOM 7 C4' G B2384 -111.056 -48.609 40.256 1.00 0.01 C
ATOM 8 O4' G B2384 -110.560 -48.240 38.932 1.00 0.01 O
ATOM 9 C3' G B2384 -110.691 -47.441 41.189 1.00 0.01 C
ATOM 10 O3' G B2384 -109.515 -47.727 41.954 1.00 0.01 O
ATOM 11 C2' G B2384 -110.364 -46.352 40.195 1.00 0.01 C
ATOM 12 O2' G B2384 -109.512 -45.346 40.670 1.00 0.01 O
ATOM 13 C1' G B2384 -109.707 -47.161 39.111 1.00 0.01 C
ATOM 14 N9 G B2384 -109.467 -46.415 37.876 1.00 0.01 N
ATOM 15 C8 G B2384 -110.130 -45.330 37.364 1.00 0.01 C
ATOM 16 N7 G B2384 -109.534 -44.768 36.343 1.00 0.01 N
ATOM 17 C5 G B2384 -108.360 -45.481 36.231 1.00 0.01 C
ATOM 18 C6 G B2384 -107.280 -45.358 35.336 1.00 0.01 C
ATOM 19 O6 G B2384 -107.112 -44.566 34.417 1.00 0.01 O
ATOM 20 N1 G B2384 -106.286 -46.284 35.550 1.00 0.01 N
ATOM 21 C2 G B2384 -106.309 -47.230 36.515 1.00 0.01 C
ATOM 22 N2 G B2384 -105.246 -48.043 36.554 1.00 0.01 N
ATOM 23 N3 G B2384 -107.303 -47.350 37.382 1.00 0.01 N
ATOM 24 C4 G B2384 -108.289 -46.455 37.183 1.00 0.01 C
ATOM 25 P A B2385 -109.594 -48.456 43.395 1.00 0.01 P
ATOM 26 OP1 A B2385 -110.964 -48.314 43.910 1.00 0.01 O
ATOM 27 OP2 A B2385 -108.471 -47.956 44.222 1.00 0.01 O
ATOM 28 O5' A B2385 -109.341 -49.941 43.001 1.00 0.01 O
TER
Atoms:
C2: (-104.770,-42.723,42.375)
OP1: (-109.651,-36.137,42.360)
OP2: (-110.491,-38.262,43.515)
C4: (-106.054,-44.489,43.045)
O5': (-108.122,-38.090,42.710)
C3': (-107.214,-39.933,39.556)
C1': (-105.546,-41.013,40.919)
O4': (-106.076,-39.946,41.642)
C5': (-108.275,-39.013,41.652)
P: (-109.389,-37.305,43.240)
O2: (-103.749,-42.019,42.299)
C4': (-107.020,-39.189,40.864)
C2': (-106.136,-41.017,39.516)
O2': (-105.112,-40.693,38.586)
N1: (-105.830,-42.255,41.643)
N3: (-104.896,-43.864,43.089)
N4: (-106.180,-45.603,43.733)
C6: (-107.017,-42.899,41.611)
C5: (-107.154,-44.020,42.304)
O3': (-107.146,-39.052,38.457)
OP1: (-109.651,-36.137,42.360)
OP2: (-110.491,-38.262,43.515)
C4: (-106.054,-44.489,43.045)
O5': (-108.122,-38.090,42.710)
C3': (-107.214,-39.933,39.556)
C1': (-105.546,-41.013,40.919)
O4': (-106.076,-39.946,41.642)
C5': (-108.275,-39.013,41.652)
P: (-109.389,-37.305,43.240)
O2: (-103.749,-42.019,42.299)
C4': (-107.020,-39.189,40.864)
C2': (-106.136,-41.017,39.516)
O2': (-105.112,-40.693,38.586)
N1: (-105.830,-42.255,41.643)
N3: (-104.896,-43.864,43.089)
N4: (-106.180,-45.603,43.733)
C6: (-107.017,-42.899,41.611)
C5: (-107.154,-44.020,42.304)
O3': (-107.146,-39.052,38.457)
OP1: (-114.987,-48.155,41.404)
OP2: (-114.682,-45.848,40.353)
C3': (-110.691,-47.441,41.189)
C1': (-109.707,-47.161,39.111)
C5': (-112.516,-48.880,40.149)
O6: (-107.112,-44.566,34.417)
O4': (-110.560,-48.240,38.932)
C8: (-110.130,-45.330,37.364)
C2: (-106.309,-47.230,36.515)
C6: (-107.280,-45.358,35.336)
C5: (-108.360,-45.481,36.231)
C4: (-108.289,-46.455,37.183)
P: (-114.631,-47.329,40.228)
C4': (-111.056,-48.609,40.256)
C2': (-110.364,-46.352,40.195)
O2': (-109.512,-45.346,40.670)
N1: (-106.286,-46.284,35.550)
N2: (-105.246,-48.043,36.554)
N3: (-107.303,-47.350,37.382)
N7: (-109.534,-44.768,36.343)
N9: (-109.467,-46.415,37.876)
O5': (-113.214,-47.753,39.642)
O3': (-109.515,-47.727,41.954)
OP2: (-114.682,-45.848,40.353)
C3': (-110.691,-47.441,41.189)
C1': (-109.707,-47.161,39.111)
C5': (-112.516,-48.880,40.149)
O6: (-107.112,-44.566,34.417)
O4': (-110.560,-48.240,38.932)
C8: (-110.130,-45.330,37.364)
C2: (-106.309,-47.230,36.515)
C6: (-107.280,-45.358,35.336)
C5: (-108.360,-45.481,36.231)
C4: (-108.289,-46.455,37.183)
P: (-114.631,-47.329,40.228)
C4': (-111.056,-48.609,40.256)
C2': (-110.364,-46.352,40.195)
O2': (-109.512,-45.346,40.670)
N1: (-106.286,-46.284,35.550)
N2: (-105.246,-48.043,36.554)
N3: (-107.303,-47.350,37.382)
N7: (-109.534,-44.768,36.343)
N9: (-109.467,-46.415,37.876)
O5': (-113.214,-47.753,39.642)
O3': (-109.515,-47.727,41.954)
Image (generated by PyMOL):