Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12091:12090
Extra
PDB:
ATOM 1 O3' G A2090 -4.520 -0.367 66.648 1.00 44.55 O
ATOM 2 P C A2091 -3.298 0.309 65.866 1.00 50.30 P
ATOM 3 OP1 C A2091 -2.482 1.064 66.871 1.00 50.16 O
ATOM 4 OP2 C A2091 -3.884 1.058 64.686 1.00 50.52 O
ATOM 5 O5' C A2091 -2.542 -0.998 65.396 1.00 50.06 O
ATOM 6 C5' C A2091 -1.469 -0.979 64.497 1.00 49.87 C
ATOM 7 C4' C A2091 -1.355 -2.312 63.817 1.00 49.79 C
ATOM 8 O4' C A2091 -2.156 -3.294 64.534 1.00 49.88 O
ATOM 9 C3' C A2091 -1.886 -2.336 62.415 1.00 49.97 C
ATOM 10 O3' C A2091 -0.909 -1.980 61.500 1.00 49.83 O
ATOM 11 C2' C A2091 -2.412 -3.742 62.214 1.00 50.01 C
ATOM 12 O2' C A2091 -1.387 -4.580 61.751 1.00 49.79 O
ATOM 13 C1' C A2091 -2.782 -4.176 63.625 1.00 50.00 C
ATOM 14 N1 C A2091 -4.232 -4.167 63.870 1.00 50.30 N
ATOM 15 C2 C A2091 -5.093 -4.896 63.076 1.00 50.50 C
ATOM 16 O2 C A2091 -4.570 -5.483 62.153 1.00 50.41 O
ATOM 17 N3 C A2091 -6.435 -4.958 63.287 1.00 50.79 N
ATOM 18 C4 C A2091 -6.887 -4.278 64.323 1.00 50.87 C
ATOM 19 N4 C A2091 -8.173 -4.303 64.588 1.00 51.16 N
ATOM 20 C5 C A2091 -6.049 -3.531 65.182 1.00 50.68 C
ATOM 21 C6 C A2091 -4.736 -3.513 64.942 1.00 50.40 C
ATOM 22 P C A2092 -1.005 -0.566 60.792 1.00 46.54 P
ATOM 23 OP1 C A2092 0.304 -0.322 60.119 1.00 46.33 O
ATOM 24 OP2 C A2092 -1.468 0.410 61.811 1.00 46.65 O
ATOM 25 O5' C A2092 -2.151 -0.823 59.701 1.00 46.83 O
TER
ATOM 1 O3' U B2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 2 P G B2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 3 OP1 G B2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 4 OP2 G B2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 5 O5' G B2090 -3.850 -0.424 70.464 1.00 44.35 O
ATOM 6 C5' G B2090 -4.944 -1.261 70.173 1.00 44.53 C
ATOM 7 C4' G B2090 -5.204 -1.282 68.700 1.00 44.60 C
ATOM 8 O4' G B2090 -6.602 -1.560 68.448 1.00 44.89 O
ATOM 9 C3' G B2090 -4.896 0.006 67.949 1.00 44.63 C
ATOM 10 O3' G B2090 -4.520 -0.367 66.648 1.00 44.55 O
ATOM 11 C2' G B2090 -6.270 0.644 67.844 1.00 44.98 C
ATOM 12 O2' G B2090 -6.385 1.583 66.802 1.00 45.10 O
ATOM 13 C1' G B2090 -7.098 -0.590 67.559 1.00 45.08 C
ATOM 14 N9 G B2090 -8.536 -0.456 67.782 1.00 45.42 N
ATOM 15 C8 G B2090 -9.240 -0.175 68.925 1.00 45.59 C
ATOM 16 N7 G B2090 -10.527 -0.205 68.781 1.00 45.90 N
ATOM 17 C5 G B2090 -10.674 -0.560 67.457 1.00 45.93 C
ATOM 18 C6 G B2090 -11.853 -0.738 66.716 1.00 46.23 C
ATOM 19 O6 G B2090 -12.982 -0.593 67.186 1.00 46.52 O
ATOM 20 N1 G B2090 -11.558 -1.099 65.397 1.00 46.18 N
ATOM 21 C2 G B2090 -10.276 -1.240 64.916 1.00 45.87 C
ATOM 22 N2 G B2090 -10.067 -1.561 63.655 1.00 45.86 N
ATOM 23 N3 G B2090 -9.187 -1.066 65.590 1.00 45.59 N
ATOM 24 C4 G B2090 -9.466 -0.732 66.845 1.00 45.65 C
ATOM 25 P C B2091 -3.298 0.309 65.866 1.00 50.30 P
ATOM 26 OP1 C B2091 -2.482 1.064 66.871 1.00 50.16 O
ATOM 27 OP2 C B2091 -3.884 1.058 64.686 1.00 50.52 O
ATOM 28 O5' C B2091 -2.542 -0.998 65.396 1.00 50.06 O
TER
ATOM 2 P C A2091 -3.298 0.309 65.866 1.00 50.30 P
ATOM 3 OP1 C A2091 -2.482 1.064 66.871 1.00 50.16 O
ATOM 4 OP2 C A2091 -3.884 1.058 64.686 1.00 50.52 O
ATOM 5 O5' C A2091 -2.542 -0.998 65.396 1.00 50.06 O
ATOM 6 C5' C A2091 -1.469 -0.979 64.497 1.00 49.87 C
ATOM 7 C4' C A2091 -1.355 -2.312 63.817 1.00 49.79 C
ATOM 8 O4' C A2091 -2.156 -3.294 64.534 1.00 49.88 O
ATOM 9 C3' C A2091 -1.886 -2.336 62.415 1.00 49.97 C
ATOM 10 O3' C A2091 -0.909 -1.980 61.500 1.00 49.83 O
ATOM 11 C2' C A2091 -2.412 -3.742 62.214 1.00 50.01 C
ATOM 12 O2' C A2091 -1.387 -4.580 61.751 1.00 49.79 O
ATOM 13 C1' C A2091 -2.782 -4.176 63.625 1.00 50.00 C
ATOM 14 N1 C A2091 -4.232 -4.167 63.870 1.00 50.30 N
ATOM 15 C2 C A2091 -5.093 -4.896 63.076 1.00 50.50 C
ATOM 16 O2 C A2091 -4.570 -5.483 62.153 1.00 50.41 O
ATOM 17 N3 C A2091 -6.435 -4.958 63.287 1.00 50.79 N
ATOM 18 C4 C A2091 -6.887 -4.278 64.323 1.00 50.87 C
ATOM 19 N4 C A2091 -8.173 -4.303 64.588 1.00 51.16 N
ATOM 20 C5 C A2091 -6.049 -3.531 65.182 1.00 50.68 C
ATOM 21 C6 C A2091 -4.736 -3.513 64.942 1.00 50.40 C
ATOM 22 P C A2092 -1.005 -0.566 60.792 1.00 46.54 P
ATOM 23 OP1 C A2092 0.304 -0.322 60.119 1.00 46.33 O
ATOM 24 OP2 C A2092 -1.468 0.410 61.811 1.00 46.65 O
ATOM 25 O5' C A2092 -2.151 -0.823 59.701 1.00 46.83 O
TER
ATOM 1 O3' U B2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 2 P G B2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 3 OP1 G B2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 4 OP2 G B2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 5 O5' G B2090 -3.850 -0.424 70.464 1.00 44.35 O
ATOM 6 C5' G B2090 -4.944 -1.261 70.173 1.00 44.53 C
ATOM 7 C4' G B2090 -5.204 -1.282 68.700 1.00 44.60 C
ATOM 8 O4' G B2090 -6.602 -1.560 68.448 1.00 44.89 O
ATOM 9 C3' G B2090 -4.896 0.006 67.949 1.00 44.63 C
ATOM 10 O3' G B2090 -4.520 -0.367 66.648 1.00 44.55 O
ATOM 11 C2' G B2090 -6.270 0.644 67.844 1.00 44.98 C
ATOM 12 O2' G B2090 -6.385 1.583 66.802 1.00 45.10 O
ATOM 13 C1' G B2090 -7.098 -0.590 67.559 1.00 45.08 C
ATOM 14 N9 G B2090 -8.536 -0.456 67.782 1.00 45.42 N
ATOM 15 C8 G B2090 -9.240 -0.175 68.925 1.00 45.59 C
ATOM 16 N7 G B2090 -10.527 -0.205 68.781 1.00 45.90 N
ATOM 17 C5 G B2090 -10.674 -0.560 67.457 1.00 45.93 C
ATOM 18 C6 G B2090 -11.853 -0.738 66.716 1.00 46.23 C
ATOM 19 O6 G B2090 -12.982 -0.593 67.186 1.00 46.52 O
ATOM 20 N1 G B2090 -11.558 -1.099 65.397 1.00 46.18 N
ATOM 21 C2 G B2090 -10.276 -1.240 64.916 1.00 45.87 C
ATOM 22 N2 G B2090 -10.067 -1.561 63.655 1.00 45.86 N
ATOM 23 N3 G B2090 -9.187 -1.066 65.590 1.00 45.59 N
ATOM 24 C4 G B2090 -9.466 -0.732 66.845 1.00 45.65 C
ATOM 25 P C B2091 -3.298 0.309 65.866 1.00 50.30 P
ATOM 26 OP1 C B2091 -2.482 1.064 66.871 1.00 50.16 O
ATOM 27 OP2 C B2091 -3.884 1.058 64.686 1.00 50.52 O
ATOM 28 O5' C B2091 -2.542 -0.998 65.396 1.00 50.06 O
TER
Atoms:
C2: (-5.093,-4.896,63.076)
OP1: (-2.482,1.064,66.871)
OP2: (-3.884,1.058,64.686)
C4: (-6.887,-4.278,64.323)
O5': (-2.542,-0.998,65.396)
C3': (-1.886,-2.336,62.415)
C1': (-2.782,-4.176,63.625)
O4': (-2.156,-3.294,64.534)
C5': (-1.469,-0.979,64.497)
P: (-3.298,0.309,65.866)
O2: (-4.570,-5.483,62.153)
C4': (-1.355,-2.312,63.817)
C2': (-2.412,-3.742,62.214)
O2': (-1.387,-4.580,61.751)
N1: (-4.232,-4.167,63.870)
N3: (-6.435,-4.958,63.287)
N4: (-8.173,-4.303,64.588)
C6: (-4.736,-3.513,64.942)
C5: (-6.049,-3.531,65.182)
O3': (-0.909,-1.980,61.500)
OP1: (-2.482,1.064,66.871)
OP2: (-3.884,1.058,64.686)
C4: (-6.887,-4.278,64.323)
O5': (-2.542,-0.998,65.396)
C3': (-1.886,-2.336,62.415)
C1': (-2.782,-4.176,63.625)
O4': (-2.156,-3.294,64.534)
C5': (-1.469,-0.979,64.497)
P: (-3.298,0.309,65.866)
O2: (-4.570,-5.483,62.153)
C4': (-1.355,-2.312,63.817)
C2': (-2.412,-3.742,62.214)
O2': (-1.387,-4.580,61.751)
N1: (-4.232,-4.167,63.870)
N3: (-6.435,-4.958,63.287)
N4: (-8.173,-4.303,64.588)
C6: (-4.736,-3.513,64.942)
C5: (-6.049,-3.531,65.182)
O3': (-0.909,-1.980,61.500)
OP1: (-2.477,-2.294,71.273)
OP2: (-1.545,0.027,71.227)
C3': (-4.896,0.006,67.949)
C1': (-7.098,-0.590,67.559)
C5': (-4.944,-1.261,70.173)
O6: (-12.982,-0.593,67.186)
O4': (-6.602,-1.560,68.448)
C8: (-9.240,-0.175,68.925)
C2: (-10.276,-1.240,64.916)
C6: (-11.853,-0.738,66.716)
C5: (-10.674,-0.560,67.457)
C4: (-9.466,-0.732,66.845)
P: (-2.691,-0.875,71.415)
C4': (-5.204,-1.282,68.700)
C2': (-6.270,0.644,67.844)
O2': (-6.385,1.583,66.802)
N1: (-11.558,-1.099,65.397)
N2: (-10.067,-1.561,63.655)
N3: (-9.187,-1.066,65.590)
N7: (-10.527,-0.205,68.781)
N9: (-8.536,-0.456,67.782)
O5': (-3.850,-0.424,70.464)
O3': (-4.520,-0.367,66.648)
OP2: (-1.545,0.027,71.227)
C3': (-4.896,0.006,67.949)
C1': (-7.098,-0.590,67.559)
C5': (-4.944,-1.261,70.173)
O6: (-12.982,-0.593,67.186)
O4': (-6.602,-1.560,68.448)
C8: (-9.240,-0.175,68.925)
C2: (-10.276,-1.240,64.916)
C6: (-11.853,-0.738,66.716)
C5: (-10.674,-0.560,67.457)
C4: (-9.466,-0.732,66.845)
P: (-2.691,-0.875,71.415)
C4': (-5.204,-1.282,68.700)
C2': (-6.270,0.644,67.844)
O2': (-6.385,1.583,66.802)
N1: (-11.558,-1.099,65.397)
N2: (-10.067,-1.561,63.655)
N3: (-9.187,-1.066,65.590)
N7: (-10.527,-0.205,68.781)
N9: (-8.536,-0.456,67.782)
O5': (-3.850,-0.424,70.464)
O3': (-4.520,-0.367,66.648)
Image (generated by PyMOL):