Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12212:12210
Extra
PDB:
ATOM 1 O3' A A2211 27.623 -1.754 74.406 1.00138.58 O
ATOM 2 P C A2212 26.952 -2.843 73.403 1.00 63.30 P
ATOM 3 OP1 C A2212 25.924 -3.621 74.227 1.00 63.38 O
ATOM 4 OP2 C A2212 28.103 -3.613 72.756 1.00 63.17 O
ATOM 5 O5' C A2212 26.197 -1.925 72.299 1.00 63.36 O
ATOM 6 C5' C A2212 24.774 -1.905 72.204 1.00 63.47 C
ATOM 7 C4' C A2212 24.295 -2.073 70.777 1.00 63.46 C
ATOM 8 O4' C A2212 25.062 -1.233 69.888 1.00 63.42 O
ATOM 9 C3' C A2212 24.427 -3.450 70.179 1.00 63.37 C
ATOM 10 O3' C A2212 23.380 -4.304 70.563 1.00 63.43 O
ATOM 11 C2' C A2212 24.462 -3.172 68.677 1.00 63.36 C
ATOM 12 O2' C A2212 23.161 -3.044 68.156 1.00 63.47 O
ATOM 13 C1' C A2212 25.152 -1.819 68.613 1.00 63.37 C
ATOM 14 N1 C A2212 26.586 -1.937 68.245 1.00 63.25 N
ATOM 15 C2 C A2212 26.952 -2.174 66.913 1.00 63.20 C
ATOM 16 O2 C A2212 26.095 -2.299 66.053 1.00 63.26 O
ATOM 17 N3 C A2212 28.252 -2.243 66.577 1.00 63.11 N
ATOM 18 C4 C A2212 29.176 -2.108 67.525 1.00 63.06 C
ATOM 19 N4 C A2212 30.456 -2.211 67.179 1.00 62.97 N
ATOM 20 C5 C A2212 28.820 -1.874 68.876 1.00 63.10 C
ATOM 21 C6 C A2212 27.535 -1.788 69.198 1.00 63.20 C
ATOM 22 P C A2213 23.474 -5.873 70.262 1.00 40.39 P
ATOM 23 OP1 C A2213 22.105 -6.432 70.379 1.00 40.50 O
ATOM 24 OP2 C A2213 24.556 -6.433 71.144 1.00 40.31 O
ATOM 25 O5' C A2213 23.936 -5.902 68.745 1.00 40.33 O
TER
ATOM 1 O3' A B2209 38.846 0.163 72.321 1.00 83.26 O
ATOM 2 P G B2210 37.484 -0.715 72.287 1.00 96.76 P
ATOM 3 OP1 G B2210 36.827 -0.540 73.602 1.00 96.84 O
ATOM 4 OP2 G B2210 37.840 -2.116 71.828 1.00 96.66 O
ATOM 5 O5' G B2210 36.639 0.021 71.136 1.00 96.78 O
ATOM 6 C5' G B2210 35.708 1.067 71.424 1.00 96.88 C
ATOM 7 C4' G B2210 34.276 0.570 71.341 1.00 96.89 C
ATOM 8 O4' G B2210 33.601 1.244 70.241 1.00 96.93 O
ATOM 9 C3' G B2210 34.135 -0.924 71.052 1.00 96.80 C
ATOM 10 O3' G B2210 33.828 -1.761 72.218 1.00 96.81 O
ATOM 11 C2' G B2210 33.039 -1.047 69.985 1.00 96.81 C
ATOM 12 O2' G B2210 31.938 -1.841 70.365 1.00 96.83 O
ATOM 13 C1' G B2210 32.611 0.386 69.686 1.00 96.90 C
ATOM 14 N9 G B2210 32.513 0.620 68.241 1.00 96.90 N
ATOM 15 C8 G B2210 33.612 0.519 67.415 1.00 96.83 C
ATOM 16 N7 G B2210 33.325 0.671 66.155 1.00 96.85 N
ATOM 17 C5 G B2210 31.944 0.849 66.125 1.00 96.92 C
ATOM 18 C6 G B2210 31.102 1.063 64.992 1.00 96.99 C
ATOM 19 O6 G B2210 31.472 1.123 63.801 1.00 96.99 O
ATOM 20 N1 G B2210 29.756 1.193 65.375 1.00 97.07 N
ATOM 21 C2 G B2210 29.280 1.131 66.680 1.00 97.10 C
ATOM 22 N2 G B2210 27.951 1.287 66.849 1.00 97.20 N
ATOM 23 N3 G B2210 30.076 0.935 67.741 1.00 97.04 N
ATOM 24 C4 G B2210 31.400 0.796 67.408 1.00 96.95 C
ATOM 25 P A B2211 33.157 -1.228 73.594 1.00138.28 P
ATOM 26 OP1 A B2211 34.074 -0.231 74.198 1.00138.34 O
ATOM 27 OP2 A B2211 32.823 -2.435 74.387 1.00138.28 O
ATOM 28 O5' A B2211 31.824 -0.525 73.100 1.00138.36 O
TER
ATOM 2 P C A2212 26.952 -2.843 73.403 1.00 63.30 P
ATOM 3 OP1 C A2212 25.924 -3.621 74.227 1.00 63.38 O
ATOM 4 OP2 C A2212 28.103 -3.613 72.756 1.00 63.17 O
ATOM 5 O5' C A2212 26.197 -1.925 72.299 1.00 63.36 O
ATOM 6 C5' C A2212 24.774 -1.905 72.204 1.00 63.47 C
ATOM 7 C4' C A2212 24.295 -2.073 70.777 1.00 63.46 C
ATOM 8 O4' C A2212 25.062 -1.233 69.888 1.00 63.42 O
ATOM 9 C3' C A2212 24.427 -3.450 70.179 1.00 63.37 C
ATOM 10 O3' C A2212 23.380 -4.304 70.563 1.00 63.43 O
ATOM 11 C2' C A2212 24.462 -3.172 68.677 1.00 63.36 C
ATOM 12 O2' C A2212 23.161 -3.044 68.156 1.00 63.47 O
ATOM 13 C1' C A2212 25.152 -1.819 68.613 1.00 63.37 C
ATOM 14 N1 C A2212 26.586 -1.937 68.245 1.00 63.25 N
ATOM 15 C2 C A2212 26.952 -2.174 66.913 1.00 63.20 C
ATOM 16 O2 C A2212 26.095 -2.299 66.053 1.00 63.26 O
ATOM 17 N3 C A2212 28.252 -2.243 66.577 1.00 63.11 N
ATOM 18 C4 C A2212 29.176 -2.108 67.525 1.00 63.06 C
ATOM 19 N4 C A2212 30.456 -2.211 67.179 1.00 62.97 N
ATOM 20 C5 C A2212 28.820 -1.874 68.876 1.00 63.10 C
ATOM 21 C6 C A2212 27.535 -1.788 69.198 1.00 63.20 C
ATOM 22 P C A2213 23.474 -5.873 70.262 1.00 40.39 P
ATOM 23 OP1 C A2213 22.105 -6.432 70.379 1.00 40.50 O
ATOM 24 OP2 C A2213 24.556 -6.433 71.144 1.00 40.31 O
ATOM 25 O5' C A2213 23.936 -5.902 68.745 1.00 40.33 O
TER
ATOM 1 O3' A B2209 38.846 0.163 72.321 1.00 83.26 O
ATOM 2 P G B2210 37.484 -0.715 72.287 1.00 96.76 P
ATOM 3 OP1 G B2210 36.827 -0.540 73.602 1.00 96.84 O
ATOM 4 OP2 G B2210 37.840 -2.116 71.828 1.00 96.66 O
ATOM 5 O5' G B2210 36.639 0.021 71.136 1.00 96.78 O
ATOM 6 C5' G B2210 35.708 1.067 71.424 1.00 96.88 C
ATOM 7 C4' G B2210 34.276 0.570 71.341 1.00 96.89 C
ATOM 8 O4' G B2210 33.601 1.244 70.241 1.00 96.93 O
ATOM 9 C3' G B2210 34.135 -0.924 71.052 1.00 96.80 C
ATOM 10 O3' G B2210 33.828 -1.761 72.218 1.00 96.81 O
ATOM 11 C2' G B2210 33.039 -1.047 69.985 1.00 96.81 C
ATOM 12 O2' G B2210 31.938 -1.841 70.365 1.00 96.83 O
ATOM 13 C1' G B2210 32.611 0.386 69.686 1.00 96.90 C
ATOM 14 N9 G B2210 32.513 0.620 68.241 1.00 96.90 N
ATOM 15 C8 G B2210 33.612 0.519 67.415 1.00 96.83 C
ATOM 16 N7 G B2210 33.325 0.671 66.155 1.00 96.85 N
ATOM 17 C5 G B2210 31.944 0.849 66.125 1.00 96.92 C
ATOM 18 C6 G B2210 31.102 1.063 64.992 1.00 96.99 C
ATOM 19 O6 G B2210 31.472 1.123 63.801 1.00 96.99 O
ATOM 20 N1 G B2210 29.756 1.193 65.375 1.00 97.07 N
ATOM 21 C2 G B2210 29.280 1.131 66.680 1.00 97.10 C
ATOM 22 N2 G B2210 27.951 1.287 66.849 1.00 97.20 N
ATOM 23 N3 G B2210 30.076 0.935 67.741 1.00 97.04 N
ATOM 24 C4 G B2210 31.400 0.796 67.408 1.00 96.95 C
ATOM 25 P A B2211 33.157 -1.228 73.594 1.00138.28 P
ATOM 26 OP1 A B2211 34.074 -0.231 74.198 1.00138.34 O
ATOM 27 OP2 A B2211 32.823 -2.435 74.387 1.00138.28 O
ATOM 28 O5' A B2211 31.824 -0.525 73.100 1.00138.36 O
TER
Atoms:
C2: (26.952,-2.174,66.913)
OP1: (25.924,-3.621,74.227)
OP2: (28.103,-3.613,72.756)
C4: (29.176,-2.108,67.525)
O5': (26.197,-1.925,72.299)
C3': (24.427,-3.450,70.179)
C1': (25.152,-1.819,68.613)
O4': (25.062,-1.233,69.888)
C5': (24.774,-1.905,72.204)
P: (26.952,-2.843,73.403)
O2: (26.095,-2.299,66.053)
C4': (24.295,-2.073,70.777)
C2': (24.462,-3.172,68.677)
O2': (23.161,-3.044,68.156)
N1: (26.586,-1.937,68.245)
N3: (28.252,-2.243,66.577)
N4: (30.456,-2.211,67.179)
C6: (27.535,-1.788,69.198)
C5: (28.820,-1.874,68.876)
O3': (23.380,-4.304,70.563)
OP1: (25.924,-3.621,74.227)
OP2: (28.103,-3.613,72.756)
C4: (29.176,-2.108,67.525)
O5': (26.197,-1.925,72.299)
C3': (24.427,-3.450,70.179)
C1': (25.152,-1.819,68.613)
O4': (25.062,-1.233,69.888)
C5': (24.774,-1.905,72.204)
P: (26.952,-2.843,73.403)
O2: (26.095,-2.299,66.053)
C4': (24.295,-2.073,70.777)
C2': (24.462,-3.172,68.677)
O2': (23.161,-3.044,68.156)
N1: (26.586,-1.937,68.245)
N3: (28.252,-2.243,66.577)
N4: (30.456,-2.211,67.179)
C6: (27.535,-1.788,69.198)
C5: (28.820,-1.874,68.876)
O3': (23.380,-4.304,70.563)
OP1: (36.827,-0.540,73.602)
OP2: (37.840,-2.116,71.828)
C3': (34.135,-0.924,71.052)
C1': (32.611,0.386,69.686)
C5': (35.708,1.067,71.424)
O6: (31.472,1.123,63.801)
O4': (33.601,1.244,70.241)
C8: (33.612,0.519,67.415)
C2: (29.280,1.131,66.680)
C6: (31.102,1.063,64.992)
C5: (31.944,0.849,66.125)
C4: (31.400,0.796,67.408)
P: (37.484,-0.715,72.287)
C4': (34.276,0.570,71.341)
C2': (33.039,-1.047,69.985)
O2': (31.938,-1.841,70.365)
N1: (29.756,1.193,65.375)
N2: (27.951,1.287,66.849)
N3: (30.076,0.935,67.741)
N7: (33.325,0.671,66.155)
N9: (32.513,0.620,68.241)
O5': (36.639,0.021,71.136)
O3': (33.828,-1.761,72.218)
OP2: (37.840,-2.116,71.828)
C3': (34.135,-0.924,71.052)
C1': (32.611,0.386,69.686)
C5': (35.708,1.067,71.424)
O6: (31.472,1.123,63.801)
O4': (33.601,1.244,70.241)
C8: (33.612,0.519,67.415)
C2: (29.280,1.131,66.680)
C6: (31.102,1.063,64.992)
C5: (31.944,0.849,66.125)
C4: (31.400,0.796,67.408)
P: (37.484,-0.715,72.287)
C4': (34.276,0.570,71.341)
C2': (33.039,-1.047,69.985)
O2': (31.938,-1.841,70.365)
N1: (29.756,1.193,65.375)
N2: (27.951,1.287,66.849)
N3: (30.076,0.935,67.741)
N7: (33.325,0.671,66.155)
N9: (32.513,0.620,68.241)
O5': (36.639,0.021,71.136)
O3': (33.828,-1.761,72.218)
Image (generated by PyMOL):