Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0255:0256
Extra
PDB:
ATOM 1 O3' G A 254 82.692 119.458 -1.830 1.00 60.18 O
ATOM 2 P G A 255 81.967 118.038 -1.607 1.00 60.90 P
ATOM 3 OP1 G A 255 80.506 118.213 -1.800 1.00 60.73 O
ATOM 4 OP2 G A 255 82.466 117.459 -0.337 1.00 61.83 O
ATOM 5 O5' G A 255 82.519 117.147 -2.804 1.00 61.85 O
ATOM 6 C5' G A 255 82.071 117.361 -4.155 1.00 62.30 C
ATOM 7 C4' G A 255 82.498 116.208 -5.035 1.00 63.06 C
ATOM 8 O4' G A 255 83.947 116.143 -5.065 1.00 63.30 O
ATOM 9 C3' G A 255 82.104 114.817 -4.562 1.00 63.28 C
ATOM 10 O3' G A 255 80.765 114.483 -4.883 1.00 62.80 O
ATOM 11 C2' G A 255 83.100 113.929 -5.291 1.00 62.56 C
ATOM 12 O2' G A 255 82.751 113.674 -6.636 1.00 63.04 O
ATOM 13 C1' G A 255 84.354 114.796 -5.239 1.00 62.74 C
ATOM 14 N9 G A 255 85.217 114.425 -4.132 1.00 62.58 N
ATOM 15 C8 G A 255 85.465 115.131 -2.982 1.00 63.80 C
ATOM 16 N7 G A 255 86.291 114.520 -2.179 1.00 64.47 N
ATOM 17 C5 G A 255 86.603 113.344 -2.842 1.00 64.81 C
ATOM 18 C6 G A 255 87.452 112.279 -2.468 1.00 65.38 C
ATOM 19 O6 G A 255 88.118 112.157 -1.435 1.00 66.21 O
ATOM 20 N1 G A 255 87.485 111.284 -3.443 1.00 65.69 N
ATOM 21 C2 G A 255 86.784 111.314 -4.627 1.00 65.39 C
ATOM 22 N2 G A 255 86.949 110.272 -5.448 1.00 65.38 N
ATOM 23 N3 G A 255 85.983 112.301 -4.981 1.00 64.53 N
ATOM 24 C4 G A 255 85.944 113.275 -4.049 1.00 64.14 C
ATOM 25 P U A 256 79.949 113.503 -3.914 1.00 62.92 P
ATOM 26 OP1 U A 256 78.611 113.281 -4.517 1.00 62.88 O
ATOM 27 OP2 U A 256 80.058 114.056 -2.532 1.00 62.72 O
ATOM 28 O5' U A 256 80.767 112.140 -3.966 1.00 60.38 O
TER
ATOM 1 O3' G B 255 80.765 114.483 -4.883 1.00 62.80 O
ATOM 2 P U B 256 79.949 113.503 -3.914 1.00 62.92 P
ATOM 3 OP1 U B 256 78.611 113.281 -4.517 1.00 62.88 O
ATOM 4 OP2 U B 256 80.058 114.056 -2.532 1.00 62.72 O
ATOM 5 O5' U B 256 80.767 112.140 -3.966 1.00 60.38 O
ATOM 6 C5' U B 256 80.915 111.425 -5.197 1.00 59.65 C
ATOM 7 C4' U B 256 81.816 110.236 -5.000 1.00 59.83 C
ATOM 8 O4' U B 256 83.129 110.691 -4.591 1.00 58.44 O
ATOM 9 C3' U B 256 81.379 109.271 -3.911 1.00 60.16 C
ATOM 10 O3' U B 256 80.435 108.337 -4.433 1.00 60.91 O
ATOM 11 C2' U B 256 82.692 108.606 -3.515 1.00 59.37 C
ATOM 12 O2' U B 256 83.062 107.561 -4.388 1.00 58.37 O
ATOM 13 C1' U B 256 83.683 109.763 -3.677 1.00 58.76 C
ATOM 14 N1 U B 256 84.020 110.476 -2.436 1.00 58.89 N
ATOM 15 C2 U B 256 85.031 109.949 -1.652 1.00 59.27 C
ATOM 16 O2 U B 256 85.610 108.908 -1.924 1.00 59.29 O
ATOM 17 N3 U B 256 85.337 110.684 -0.531 1.00 59.63 N
ATOM 18 C4 U B 256 84.741 111.855 -0.115 1.00 59.70 C
ATOM 19 O4 U B 256 85.127 112.394 0.929 1.00 60.31 O
ATOM 20 C5 U B 256 83.688 112.324 -0.967 1.00 59.36 C
ATOM 21 C6 U B 256 83.371 111.637 -2.068 1.00 58.67 C
ATOM 22 P G B 257 79.087 108.016 -3.622 1.00 62.18 P
ATOM 23 OP1 G B 257 78.235 107.159 -4.489 1.00 62.73 O
ATOM 24 OP2 G B 257 78.537 109.283 -3.081 1.00 62.87 O
ATOM 25 O5' G B 257 79.584 107.142 -2.390 1.00 61.85 O
TER
ATOM 2 P G A 255 81.967 118.038 -1.607 1.00 60.90 P
ATOM 3 OP1 G A 255 80.506 118.213 -1.800 1.00 60.73 O
ATOM 4 OP2 G A 255 82.466 117.459 -0.337 1.00 61.83 O
ATOM 5 O5' G A 255 82.519 117.147 -2.804 1.00 61.85 O
ATOM 6 C5' G A 255 82.071 117.361 -4.155 1.00 62.30 C
ATOM 7 C4' G A 255 82.498 116.208 -5.035 1.00 63.06 C
ATOM 8 O4' G A 255 83.947 116.143 -5.065 1.00 63.30 O
ATOM 9 C3' G A 255 82.104 114.817 -4.562 1.00 63.28 C
ATOM 10 O3' G A 255 80.765 114.483 -4.883 1.00 62.80 O
ATOM 11 C2' G A 255 83.100 113.929 -5.291 1.00 62.56 C
ATOM 12 O2' G A 255 82.751 113.674 -6.636 1.00 63.04 O
ATOM 13 C1' G A 255 84.354 114.796 -5.239 1.00 62.74 C
ATOM 14 N9 G A 255 85.217 114.425 -4.132 1.00 62.58 N
ATOM 15 C8 G A 255 85.465 115.131 -2.982 1.00 63.80 C
ATOM 16 N7 G A 255 86.291 114.520 -2.179 1.00 64.47 N
ATOM 17 C5 G A 255 86.603 113.344 -2.842 1.00 64.81 C
ATOM 18 C6 G A 255 87.452 112.279 -2.468 1.00 65.38 C
ATOM 19 O6 G A 255 88.118 112.157 -1.435 1.00 66.21 O
ATOM 20 N1 G A 255 87.485 111.284 -3.443 1.00 65.69 N
ATOM 21 C2 G A 255 86.784 111.314 -4.627 1.00 65.39 C
ATOM 22 N2 G A 255 86.949 110.272 -5.448 1.00 65.38 N
ATOM 23 N3 G A 255 85.983 112.301 -4.981 1.00 64.53 N
ATOM 24 C4 G A 255 85.944 113.275 -4.049 1.00 64.14 C
ATOM 25 P U A 256 79.949 113.503 -3.914 1.00 62.92 P
ATOM 26 OP1 U A 256 78.611 113.281 -4.517 1.00 62.88 O
ATOM 27 OP2 U A 256 80.058 114.056 -2.532 1.00 62.72 O
ATOM 28 O5' U A 256 80.767 112.140 -3.966 1.00 60.38 O
TER
ATOM 1 O3' G B 255 80.765 114.483 -4.883 1.00 62.80 O
ATOM 2 P U B 256 79.949 113.503 -3.914 1.00 62.92 P
ATOM 3 OP1 U B 256 78.611 113.281 -4.517 1.00 62.88 O
ATOM 4 OP2 U B 256 80.058 114.056 -2.532 1.00 62.72 O
ATOM 5 O5' U B 256 80.767 112.140 -3.966 1.00 60.38 O
ATOM 6 C5' U B 256 80.915 111.425 -5.197 1.00 59.65 C
ATOM 7 C4' U B 256 81.816 110.236 -5.000 1.00 59.83 C
ATOM 8 O4' U B 256 83.129 110.691 -4.591 1.00 58.44 O
ATOM 9 C3' U B 256 81.379 109.271 -3.911 1.00 60.16 C
ATOM 10 O3' U B 256 80.435 108.337 -4.433 1.00 60.91 O
ATOM 11 C2' U B 256 82.692 108.606 -3.515 1.00 59.37 C
ATOM 12 O2' U B 256 83.062 107.561 -4.388 1.00 58.37 O
ATOM 13 C1' U B 256 83.683 109.763 -3.677 1.00 58.76 C
ATOM 14 N1 U B 256 84.020 110.476 -2.436 1.00 58.89 N
ATOM 15 C2 U B 256 85.031 109.949 -1.652 1.00 59.27 C
ATOM 16 O2 U B 256 85.610 108.908 -1.924 1.00 59.29 O
ATOM 17 N3 U B 256 85.337 110.684 -0.531 1.00 59.63 N
ATOM 18 C4 U B 256 84.741 111.855 -0.115 1.00 59.70 C
ATOM 19 O4 U B 256 85.127 112.394 0.929 1.00 60.31 O
ATOM 20 C5 U B 256 83.688 112.324 -0.967 1.00 59.36 C
ATOM 21 C6 U B 256 83.371 111.637 -2.068 1.00 58.67 C
ATOM 22 P G B 257 79.087 108.016 -3.622 1.00 62.18 P
ATOM 23 OP1 G B 257 78.235 107.159 -4.489 1.00 62.73 O
ATOM 24 OP2 G B 257 78.537 109.283 -3.081 1.00 62.87 O
ATOM 25 O5' G B 257 79.584 107.142 -2.390 1.00 61.85 O
TER
Atoms:
OP1: (80.506,118.213,-1.800)
OP2: (82.466,117.459,-0.337)
C3': (82.104,114.817,-4.562)
C1': (84.354,114.796,-5.239)
C5': (82.071,117.361,-4.155)
O6: (88.118,112.157,-1.435)
O4': (83.947,116.143,-5.065)
C8: (85.465,115.131,-2.982)
C2: (86.784,111.314,-4.627)
C6: (87.452,112.279,-2.468)
C5: (86.603,113.344,-2.842)
C4: (85.944,113.275,-4.049)
P: (81.967,118.038,-1.607)
C4': (82.498,116.208,-5.035)
C2': (83.100,113.929,-5.291)
O2': (82.751,113.674,-6.636)
N1: (87.485,111.284,-3.443)
N2: (86.949,110.272,-5.448)
N3: (85.983,112.301,-4.981)
N7: (86.291,114.520,-2.179)
N9: (85.217,114.425,-4.132)
O5': (82.519,117.147,-2.804)
O3': (80.765,114.483,-4.883)
OP2: (82.466,117.459,-0.337)
C3': (82.104,114.817,-4.562)
C1': (84.354,114.796,-5.239)
C5': (82.071,117.361,-4.155)
O6: (88.118,112.157,-1.435)
O4': (83.947,116.143,-5.065)
C8: (85.465,115.131,-2.982)
C2: (86.784,111.314,-4.627)
C6: (87.452,112.279,-2.468)
C5: (86.603,113.344,-2.842)
C4: (85.944,113.275,-4.049)
P: (81.967,118.038,-1.607)
C4': (82.498,116.208,-5.035)
C2': (83.100,113.929,-5.291)
O2': (82.751,113.674,-6.636)
N1: (87.485,111.284,-3.443)
N2: (86.949,110.272,-5.448)
N3: (85.983,112.301,-4.981)
N7: (86.291,114.520,-2.179)
N9: (85.217,114.425,-4.132)
O5': (82.519,117.147,-2.804)
O3': (80.765,114.483,-4.883)
C4: (84.741,111.855,-0.115)
N3: (85.337,110.684,-0.531)
OP1: (78.611,113.281,-4.517)
OP2: (80.058,114.056,-2.532)
C2: (85.031,109.949,-1.652)
C1': (83.683,109.763,-3.677)
C3': (81.379,109.271,-3.911)
O5': (80.767,112.140,-3.966)
O4': (83.129,110.691,-4.591)
C5': (80.915,111.425,-5.197)
P: (79.949,113.503,-3.914)
C4': (81.816,110.236,-5.000)
C2': (82.692,108.606,-3.515)
O2': (83.062,107.561,-4.388)
N1: (84.020,110.476,-2.436)
O4: (85.127,112.394,0.929)
O2: (85.610,108.908,-1.924)
C6: (83.371,111.637,-2.068)
C5: (83.688,112.324,-0.967)
O3': (80.435,108.337,-4.433)
N3: (85.337,110.684,-0.531)
OP1: (78.611,113.281,-4.517)
OP2: (80.058,114.056,-2.532)
C2: (85.031,109.949,-1.652)
C1': (83.683,109.763,-3.677)
C3': (81.379,109.271,-3.911)
O5': (80.767,112.140,-3.966)
O4': (83.129,110.691,-4.591)
C5': (80.915,111.425,-5.197)
P: (79.949,113.503,-3.914)
C4': (81.816,110.236,-5.000)
C2': (82.692,108.606,-3.515)
O2': (83.062,107.561,-4.388)
N1: (84.020,110.476,-2.436)
O4: (85.127,112.394,0.929)
O2: (85.610,108.908,-1.924)
C6: (83.371,111.637,-2.068)
C5: (83.688,112.324,-0.967)
O3': (80.435,108.337,-4.433)
Image (generated by PyMOL):