Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12432:12429
Extra
PDB:
ATOM 1 O3' A A2431 -10.803 -60.934 35.996 1.00 78.08 O
ATOM 2 P A A2432 -11.391 -62.413 36.004 1.00 78.67 P
ATOM 3 OP1 A A2432 -10.240 -63.336 35.858 1.00 78.73 O
ATOM 4 OP2 A A2432 -12.473 -62.458 34.979 1.00 79.21 O
ATOM 5 O5' A A2432 -12.018 -62.546 37.474 1.00 78.52 O
ATOM 6 C5' A A2432 -11.193 -62.553 38.634 1.00 78.05 C
ATOM 7 C4' A A2432 -11.497 -63.717 39.562 1.00 78.30 C
ATOM 8 O4' A A2432 -12.824 -63.564 40.158 1.00 78.45 O
ATOM 9 C3' A A2432 -11.476 -65.102 38.914 1.00 78.91 C
ATOM 10 O3' A A2432 -10.891 -66.047 39.811 1.00 78.89 O
ATOM 11 C2' A A2432 -12.961 -65.416 38.743 1.00 79.43 C
ATOM 12 O2' A A2432 -13.281 -66.791 38.652 1.00 80.01 O
ATOM 13 C1' A A2432 -13.543 -64.775 39.991 1.00 79.08 C
ATOM 14 N9 A A2432 -14.970 -64.484 39.875 1.00 79.37 N
ATOM 15 C8 A A2432 -15.650 -64.088 38.756 1.00 79.67 C
ATOM 16 N7 A A2432 -16.938 -63.962 38.948 1.00 79.93 N
ATOM 17 C5 A A2432 -17.126 -64.308 40.270 1.00 79.80 C
ATOM 18 C6 A A2432 -18.273 -64.374 41.089 1.00 79.95 C
ATOM 19 N6 A A2432 -19.496 -64.073 40.693 1.00 80.28 N
ATOM 20 N1 A A2432 -18.112 -64.762 42.361 1.00 79.77 N
ATOM 21 C2 A A2432 -16.860 -65.034 42.753 1.00 79.44 C
ATOM 22 N3 A A2432 -15.706 -65.038 42.106 1.00 79.27 N
ATOM 23 C4 A A2432 -15.914 -64.650 40.844 1.00 79.46 C
ATOM 24 P U A2433 -9.291 -66.212 39.882 1.00 61.94 P
ATOM 25 OP1 U A2433 -8.876 -65.733 41.224 1.00 61.39 O
ATOM 26 OP2 U A2433 -8.719 -65.549 38.664 1.00 61.85 O
ATOM 27 O5' U A2433 -9.083 -67.789 39.759 1.00 62.48 O
TER
ATOM 1 O3' A B2428 -19.045 -64.022 31.998 1.00 82.68 O
ATOM 2 P G B2429 -18.966 -62.856 30.902 1.00 86.35 P
ATOM 3 OP1 G B2429 -20.278 -62.781 30.245 1.00 86.90 O
ATOM 4 OP2 G B2429 -17.772 -63.107 30.060 1.00 86.34 O
ATOM 5 O5' G B2429 -18.744 -61.585 31.824 1.00 85.62 O
ATOM 6 C5' G B2429 -18.222 -60.385 31.314 1.00 85.23 C
ATOM 7 C4' G B2429 -19.042 -59.225 31.772 1.00 84.98 C
ATOM 8 O4' G B2429 -19.903 -59.653 32.845 1.00 85.06 O
ATOM 9 C3' G B2429 -18.255 -58.032 32.286 1.00 84.25 C
ATOM 10 O3' G B2429 -18.735 -56.860 31.665 1.00 84.21 O
ATOM 11 C2' G B2429 -18.553 -57.977 33.779 1.00 83.92 C
ATOM 12 O2' G B2429 -18.622 -56.655 34.298 1.00 83.41 O
ATOM 13 C1' G B2429 -19.892 -58.701 33.881 1.00 84.49 C
ATOM 14 N9 G B2429 -20.102 -59.422 35.143 1.00 84.45 N
ATOM 15 C8 G B2429 -21.145 -59.242 36.027 1.00 84.47 C
ATOM 16 N7 G B2429 -21.118 -60.035 37.067 1.00 84.45 N
ATOM 17 C5 G B2429 -19.988 -60.806 36.843 1.00 84.42 C
ATOM 18 C6 G B2429 -19.438 -61.843 37.630 1.00 84.40 C
ATOM 19 O6 G B2429 -19.850 -62.299 38.704 1.00 84.41 O
ATOM 20 N1 G B2429 -18.292 -62.354 37.055 1.00 84.38 N
ATOM 21 C2 G B2429 -17.729 -61.935 35.902 1.00 84.37 C
ATOM 22 N2 G B2429 -16.630 -62.607 35.556 1.00 84.37 N
ATOM 23 N3 G B2429 -18.224 -60.972 35.151 1.00 84.39 N
ATOM 24 C4 G B2429 -19.347 -60.448 35.673 1.00 84.41 C
ATOM 25 P A B2430 -17.925 -56.279 30.428 1.00 87.37 P
ATOM 26 OP1 A B2430 -18.459 -54.916 30.167 1.00 87.21 O
ATOM 27 OP2 A B2430 -17.976 -57.305 29.345 1.00 88.00 O
ATOM 28 O5' A B2430 -16.445 -56.186 31.015 1.00 86.76 O
TER
ATOM 2 P A A2432 -11.391 -62.413 36.004 1.00 78.67 P
ATOM 3 OP1 A A2432 -10.240 -63.336 35.858 1.00 78.73 O
ATOM 4 OP2 A A2432 -12.473 -62.458 34.979 1.00 79.21 O
ATOM 5 O5' A A2432 -12.018 -62.546 37.474 1.00 78.52 O
ATOM 6 C5' A A2432 -11.193 -62.553 38.634 1.00 78.05 C
ATOM 7 C4' A A2432 -11.497 -63.717 39.562 1.00 78.30 C
ATOM 8 O4' A A2432 -12.824 -63.564 40.158 1.00 78.45 O
ATOM 9 C3' A A2432 -11.476 -65.102 38.914 1.00 78.91 C
ATOM 10 O3' A A2432 -10.891 -66.047 39.811 1.00 78.89 O
ATOM 11 C2' A A2432 -12.961 -65.416 38.743 1.00 79.43 C
ATOM 12 O2' A A2432 -13.281 -66.791 38.652 1.00 80.01 O
ATOM 13 C1' A A2432 -13.543 -64.775 39.991 1.00 79.08 C
ATOM 14 N9 A A2432 -14.970 -64.484 39.875 1.00 79.37 N
ATOM 15 C8 A A2432 -15.650 -64.088 38.756 1.00 79.67 C
ATOM 16 N7 A A2432 -16.938 -63.962 38.948 1.00 79.93 N
ATOM 17 C5 A A2432 -17.126 -64.308 40.270 1.00 79.80 C
ATOM 18 C6 A A2432 -18.273 -64.374 41.089 1.00 79.95 C
ATOM 19 N6 A A2432 -19.496 -64.073 40.693 1.00 80.28 N
ATOM 20 N1 A A2432 -18.112 -64.762 42.361 1.00 79.77 N
ATOM 21 C2 A A2432 -16.860 -65.034 42.753 1.00 79.44 C
ATOM 22 N3 A A2432 -15.706 -65.038 42.106 1.00 79.27 N
ATOM 23 C4 A A2432 -15.914 -64.650 40.844 1.00 79.46 C
ATOM 24 P U A2433 -9.291 -66.212 39.882 1.00 61.94 P
ATOM 25 OP1 U A2433 -8.876 -65.733 41.224 1.00 61.39 O
ATOM 26 OP2 U A2433 -8.719 -65.549 38.664 1.00 61.85 O
ATOM 27 O5' U A2433 -9.083 -67.789 39.759 1.00 62.48 O
TER
ATOM 1 O3' A B2428 -19.045 -64.022 31.998 1.00 82.68 O
ATOM 2 P G B2429 -18.966 -62.856 30.902 1.00 86.35 P
ATOM 3 OP1 G B2429 -20.278 -62.781 30.245 1.00 86.90 O
ATOM 4 OP2 G B2429 -17.772 -63.107 30.060 1.00 86.34 O
ATOM 5 O5' G B2429 -18.744 -61.585 31.824 1.00 85.62 O
ATOM 6 C5' G B2429 -18.222 -60.385 31.314 1.00 85.23 C
ATOM 7 C4' G B2429 -19.042 -59.225 31.772 1.00 84.98 C
ATOM 8 O4' G B2429 -19.903 -59.653 32.845 1.00 85.06 O
ATOM 9 C3' G B2429 -18.255 -58.032 32.286 1.00 84.25 C
ATOM 10 O3' G B2429 -18.735 -56.860 31.665 1.00 84.21 O
ATOM 11 C2' G B2429 -18.553 -57.977 33.779 1.00 83.92 C
ATOM 12 O2' G B2429 -18.622 -56.655 34.298 1.00 83.41 O
ATOM 13 C1' G B2429 -19.892 -58.701 33.881 1.00 84.49 C
ATOM 14 N9 G B2429 -20.102 -59.422 35.143 1.00 84.45 N
ATOM 15 C8 G B2429 -21.145 -59.242 36.027 1.00 84.47 C
ATOM 16 N7 G B2429 -21.118 -60.035 37.067 1.00 84.45 N
ATOM 17 C5 G B2429 -19.988 -60.806 36.843 1.00 84.42 C
ATOM 18 C6 G B2429 -19.438 -61.843 37.630 1.00 84.40 C
ATOM 19 O6 G B2429 -19.850 -62.299 38.704 1.00 84.41 O
ATOM 20 N1 G B2429 -18.292 -62.354 37.055 1.00 84.38 N
ATOM 21 C2 G B2429 -17.729 -61.935 35.902 1.00 84.37 C
ATOM 22 N2 G B2429 -16.630 -62.607 35.556 1.00 84.37 N
ATOM 23 N3 G B2429 -18.224 -60.972 35.151 1.00 84.39 N
ATOM 24 C4 G B2429 -19.347 -60.448 35.673 1.00 84.41 C
ATOM 25 P A B2430 -17.925 -56.279 30.428 1.00 87.37 P
ATOM 26 OP1 A B2430 -18.459 -54.916 30.167 1.00 87.21 O
ATOM 27 OP2 A B2430 -17.976 -57.305 29.345 1.00 88.00 O
ATOM 28 O5' A B2430 -16.445 -56.186 31.015 1.00 86.76 O
TER
Atoms:
OP1: (-10.240,-63.336,35.858)
OP2: (-12.473,-62.458,34.979)
C3': (-11.476,-65.102,38.914)
C1': (-13.543,-64.775,39.991)
C5': (-11.193,-62.553,38.634)
O4': (-12.824,-63.564,40.158)
C8: (-15.650,-64.088,38.756)
O2': (-13.281,-66.791,38.652)
C6: (-18.273,-64.374,41.089)
C5: (-17.126,-64.308,40.270)
C4: (-15.914,-64.650,40.844)
P: (-11.391,-62.413,36.004)
C4': (-11.497,-63.717,39.562)
C2': (-12.961,-65.416,38.743)
C2: (-16.860,-65.034,42.753)
N1: (-18.112,-64.762,42.361)
N3: (-15.706,-65.038,42.106)
N6: (-19.496,-64.073,40.693)
N7: (-16.938,-63.962,38.948)
N9: (-14.970,-64.484,39.875)
O5': (-12.018,-62.546,37.474)
O3': (-10.891,-66.047,39.811)
OP2: (-12.473,-62.458,34.979)
C3': (-11.476,-65.102,38.914)
C1': (-13.543,-64.775,39.991)
C5': (-11.193,-62.553,38.634)
O4': (-12.824,-63.564,40.158)
C8: (-15.650,-64.088,38.756)
O2': (-13.281,-66.791,38.652)
C6: (-18.273,-64.374,41.089)
C5: (-17.126,-64.308,40.270)
C4: (-15.914,-64.650,40.844)
P: (-11.391,-62.413,36.004)
C4': (-11.497,-63.717,39.562)
C2': (-12.961,-65.416,38.743)
C2: (-16.860,-65.034,42.753)
N1: (-18.112,-64.762,42.361)
N3: (-15.706,-65.038,42.106)
N6: (-19.496,-64.073,40.693)
N7: (-16.938,-63.962,38.948)
N9: (-14.970,-64.484,39.875)
O5': (-12.018,-62.546,37.474)
O3': (-10.891,-66.047,39.811)
OP1: (-20.278,-62.781,30.245)
OP2: (-17.772,-63.107,30.060)
C3': (-18.255,-58.032,32.286)
C1': (-19.892,-58.701,33.881)
C5': (-18.222,-60.385,31.314)
O6: (-19.850,-62.299,38.704)
O4': (-19.903,-59.653,32.845)
C8: (-21.145,-59.242,36.027)
C2: (-17.729,-61.935,35.902)
C6: (-19.438,-61.843,37.630)
C5: (-19.988,-60.806,36.843)
C4: (-19.347,-60.448,35.673)
P: (-18.966,-62.856,30.902)
C4': (-19.042,-59.225,31.772)
C2': (-18.553,-57.977,33.779)
O2': (-18.622,-56.655,34.298)
N1: (-18.292,-62.354,37.055)
N2: (-16.630,-62.607,35.556)
N3: (-18.224,-60.972,35.151)
N7: (-21.118,-60.035,37.067)
N9: (-20.102,-59.422,35.143)
O5': (-18.744,-61.585,31.824)
O3': (-18.735,-56.860,31.665)
OP2: (-17.772,-63.107,30.060)
C3': (-18.255,-58.032,32.286)
C1': (-19.892,-58.701,33.881)
C5': (-18.222,-60.385,31.314)
O6: (-19.850,-62.299,38.704)
O4': (-19.903,-59.653,32.845)
C8: (-21.145,-59.242,36.027)
C2: (-17.729,-61.935,35.902)
C6: (-19.438,-61.843,37.630)
C5: (-19.988,-60.806,36.843)
C4: (-19.347,-60.448,35.673)
P: (-18.966,-62.856,30.902)
C4': (-19.042,-59.225,31.772)
C2': (-18.553,-57.977,33.779)
O2': (-18.622,-56.655,34.298)
N1: (-18.292,-62.354,37.055)
N2: (-16.630,-62.607,35.556)
N3: (-18.224,-60.972,35.151)
N7: (-21.118,-60.035,37.067)
N9: (-20.102,-59.422,35.143)
O5': (-18.744,-61.585,31.824)
O3': (-18.735,-56.860,31.665)
Image (generated by PyMOL):