Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OIJ:D8:D6
Extra
PDB:
ATOM 1 O3' A A 7 47.826 -6.364 0.715 1.00 60.54 O
ATOM 2 P A A 8 47.488 -7.542 -0.298 1.00 67.32 P
ATOM 3 OP1 A A 8 48.741 -7.713 -1.085 1.00 62.11 O
ATOM 4 OP2 A A 8 46.227 -7.143 -0.975 1.00 69.49 O
ATOM 5 O5' A A 8 47.259 -8.777 0.681 1.00 58.70 O
ATOM 6 C5' A A 8 48.385 -9.499 1.160 1.00 55.82 C
ATOM 7 C4' A A 8 48.259 -9.851 2.618 1.00 53.29 C
ATOM 8 O4' A A 8 47.961 -8.657 3.392 1.00 62.54 O
ATOM 9 C3' A A 8 47.144 -10.819 2.968 1.00 53.94 C
ATOM 10 O3' A A 8 47.509 -12.168 2.741 1.00 52.13 O
ATOM 11 C2' A A 8 46.869 -10.495 4.434 1.00 61.85 C
ATOM 12 O2' A A 8 47.837 -11.102 5.283 1.00 50.86 O
ATOM 13 C1' A A 8 47.096 -8.979 4.462 1.00 65.42 C
ATOM 14 N9 A A 8 45.846 -8.208 4.305 1.00 61.53 N
ATOM 15 C8 A A 8 44.977 -8.225 3.247 1.00 63.30 C
ATOM 16 N7 A A 8 43.946 -7.427 3.377 1.00 57.65 N
ATOM 17 C5 A A 8 44.143 -6.842 4.616 1.00 57.28 C
ATOM 18 C6 A A 8 43.404 -5.890 5.343 1.00 59.21 C
ATOM 19 N6 A A 8 42.268 -5.348 4.906 1.00 55.82 N
ATOM 20 N1 A A 8 43.877 -5.505 6.549 1.00 58.89 N
ATOM 21 C2 A A 8 45.021 -6.043 6.981 1.00 57.66 C
ATOM 22 N3 A A 8 45.806 -6.945 6.388 1.00 61.50 N
ATOM 23 C4 A A 8 45.308 -7.312 5.196 1.00 57.65 C
ATOM 24 P C A 9 46.710 -13.095 1.697 1.00 73.32 P
ATOM 25 OP1 C A 9 47.212 -14.480 1.790 1.00 54.09 O
ATOM 26 OP2 C A 9 46.863 -12.358 0.421 1.00 59.38 O
ATOM 27 O5' C A 9 45.201 -13.060 2.233 1.00 61.95 O
TER
ATOM 1 O3' U B 5 37.748 0.518 2.310 1.00 50.15 O
ATOM 2 P C B 6 38.845 0.230 3.424 1.00 59.44 P
ATOM 3 OP1 C B 6 38.280 0.705 4.714 1.00 63.45 O
ATOM 4 OP2 C B 6 40.139 0.782 2.947 1.00 58.14 O
ATOM 5 O5' C B 6 38.874 -1.358 3.299 1.00 46.30 O
ATOM 6 C5' C B 6 39.704 -2.147 4.133 1.00 44.23 C
ATOM 7 C4' C B 6 39.867 -3.543 3.603 1.00 42.61 C
ATOM 8 O4' C B 6 38.608 -4.256 3.585 1.00 46.26 O
ATOM 9 C3' C B 6 40.349 -3.648 2.177 1.00 48.40 C
ATOM 10 O3' C B 6 41.734 -3.364 2.111 1.00 56.44 O
ATOM 11 C2' C B 6 39.935 -5.074 1.811 1.00 52.46 C
ATOM 12 O2' C B 6 40.783 -6.046 2.409 1.00 54.97 O
ATOM 13 C1' C B 6 38.595 -5.190 2.526 1.00 53.57 C
ATOM 14 N1 C B 6 37.396 -4.903 1.724 1.00 63.30 N
ATOM 15 C2 C B 6 36.229 -5.591 2.057 1.00 69.66 C
ATOM 16 O2 C B 6 36.264 -6.414 2.978 1.00 69.67 O
ATOM 17 N3 C B 6 35.093 -5.348 1.372 1.00 75.39 N
ATOM 18 C4 C B 6 35.093 -4.452 0.385 1.00 69.48 C
ATOM 19 N4 C B 6 33.941 -4.243 -0.260 1.00 60.06 N
ATOM 20 C5 C B 6 36.274 -3.735 0.025 1.00 66.57 C
ATOM 21 C6 C B 6 37.395 -3.984 0.714 1.00 62.83 C
ATOM 22 P A B 7 42.630 -3.514 0.793 1.00 67.56 P
ATOM 23 OP1 A B 7 42.460 -2.301 -0.043 1.00 76.57 O
ATOM 24 OP2 A B 7 42.350 -4.849 0.221 1.00 56.46 O
ATOM 25 O5' A B 7 44.068 -3.531 1.456 1.00 50.76 O
TER
ATOM 2 P A A 8 47.488 -7.542 -0.298 1.00 67.32 P
ATOM 3 OP1 A A 8 48.741 -7.713 -1.085 1.00 62.11 O
ATOM 4 OP2 A A 8 46.227 -7.143 -0.975 1.00 69.49 O
ATOM 5 O5' A A 8 47.259 -8.777 0.681 1.00 58.70 O
ATOM 6 C5' A A 8 48.385 -9.499 1.160 1.00 55.82 C
ATOM 7 C4' A A 8 48.259 -9.851 2.618 1.00 53.29 C
ATOM 8 O4' A A 8 47.961 -8.657 3.392 1.00 62.54 O
ATOM 9 C3' A A 8 47.144 -10.819 2.968 1.00 53.94 C
ATOM 10 O3' A A 8 47.509 -12.168 2.741 1.00 52.13 O
ATOM 11 C2' A A 8 46.869 -10.495 4.434 1.00 61.85 C
ATOM 12 O2' A A 8 47.837 -11.102 5.283 1.00 50.86 O
ATOM 13 C1' A A 8 47.096 -8.979 4.462 1.00 65.42 C
ATOM 14 N9 A A 8 45.846 -8.208 4.305 1.00 61.53 N
ATOM 15 C8 A A 8 44.977 -8.225 3.247 1.00 63.30 C
ATOM 16 N7 A A 8 43.946 -7.427 3.377 1.00 57.65 N
ATOM 17 C5 A A 8 44.143 -6.842 4.616 1.00 57.28 C
ATOM 18 C6 A A 8 43.404 -5.890 5.343 1.00 59.21 C
ATOM 19 N6 A A 8 42.268 -5.348 4.906 1.00 55.82 N
ATOM 20 N1 A A 8 43.877 -5.505 6.549 1.00 58.89 N
ATOM 21 C2 A A 8 45.021 -6.043 6.981 1.00 57.66 C
ATOM 22 N3 A A 8 45.806 -6.945 6.388 1.00 61.50 N
ATOM 23 C4 A A 8 45.308 -7.312 5.196 1.00 57.65 C
ATOM 24 P C A 9 46.710 -13.095 1.697 1.00 73.32 P
ATOM 25 OP1 C A 9 47.212 -14.480 1.790 1.00 54.09 O
ATOM 26 OP2 C A 9 46.863 -12.358 0.421 1.00 59.38 O
ATOM 27 O5' C A 9 45.201 -13.060 2.233 1.00 61.95 O
TER
ATOM 1 O3' U B 5 37.748 0.518 2.310 1.00 50.15 O
ATOM 2 P C B 6 38.845 0.230 3.424 1.00 59.44 P
ATOM 3 OP1 C B 6 38.280 0.705 4.714 1.00 63.45 O
ATOM 4 OP2 C B 6 40.139 0.782 2.947 1.00 58.14 O
ATOM 5 O5' C B 6 38.874 -1.358 3.299 1.00 46.30 O
ATOM 6 C5' C B 6 39.704 -2.147 4.133 1.00 44.23 C
ATOM 7 C4' C B 6 39.867 -3.543 3.603 1.00 42.61 C
ATOM 8 O4' C B 6 38.608 -4.256 3.585 1.00 46.26 O
ATOM 9 C3' C B 6 40.349 -3.648 2.177 1.00 48.40 C
ATOM 10 O3' C B 6 41.734 -3.364 2.111 1.00 56.44 O
ATOM 11 C2' C B 6 39.935 -5.074 1.811 1.00 52.46 C
ATOM 12 O2' C B 6 40.783 -6.046 2.409 1.00 54.97 O
ATOM 13 C1' C B 6 38.595 -5.190 2.526 1.00 53.57 C
ATOM 14 N1 C B 6 37.396 -4.903 1.724 1.00 63.30 N
ATOM 15 C2 C B 6 36.229 -5.591 2.057 1.00 69.66 C
ATOM 16 O2 C B 6 36.264 -6.414 2.978 1.00 69.67 O
ATOM 17 N3 C B 6 35.093 -5.348 1.372 1.00 75.39 N
ATOM 18 C4 C B 6 35.093 -4.452 0.385 1.00 69.48 C
ATOM 19 N4 C B 6 33.941 -4.243 -0.260 1.00 60.06 N
ATOM 20 C5 C B 6 36.274 -3.735 0.025 1.00 66.57 C
ATOM 21 C6 C B 6 37.395 -3.984 0.714 1.00 62.83 C
ATOM 22 P A B 7 42.630 -3.514 0.793 1.00 67.56 P
ATOM 23 OP1 A B 7 42.460 -2.301 -0.043 1.00 76.57 O
ATOM 24 OP2 A B 7 42.350 -4.849 0.221 1.00 56.46 O
ATOM 25 O5' A B 7 44.068 -3.531 1.456 1.00 50.76 O
TER
Atoms:
OP1: (48.741,-7.713,-1.085)
OP2: (46.227,-7.143,-0.975)
C3': (47.144,-10.819,2.968)
C1': (47.096,-8.979,4.462)
C5': (48.385,-9.499,1.160)
O4': (47.961,-8.657,3.392)
C8: (44.977,-8.225,3.247)
O2': (47.837,-11.102,5.283)
C6: (43.404,-5.890,5.343)
C5: (44.143,-6.842,4.616)
C4: (45.308,-7.312,5.196)
P: (47.488,-7.542,-0.298)
C4': (48.259,-9.851,2.618)
C2': (46.869,-10.495,4.434)
C2: (45.021,-6.043,6.981)
N1: (43.877,-5.505,6.549)
N3: (45.806,-6.945,6.388)
N6: (42.268,-5.348,4.906)
N7: (43.946,-7.427,3.377)
N9: (45.846,-8.208,4.305)
O5': (47.259,-8.777,0.681)
O3': (47.509,-12.168,2.741)
OP2: (46.227,-7.143,-0.975)
C3': (47.144,-10.819,2.968)
C1': (47.096,-8.979,4.462)
C5': (48.385,-9.499,1.160)
O4': (47.961,-8.657,3.392)
C8: (44.977,-8.225,3.247)
O2': (47.837,-11.102,5.283)
C6: (43.404,-5.890,5.343)
C5: (44.143,-6.842,4.616)
C4: (45.308,-7.312,5.196)
P: (47.488,-7.542,-0.298)
C4': (48.259,-9.851,2.618)
C2': (46.869,-10.495,4.434)
C2: (45.021,-6.043,6.981)
N1: (43.877,-5.505,6.549)
N3: (45.806,-6.945,6.388)
N6: (42.268,-5.348,4.906)
N7: (43.946,-7.427,3.377)
N9: (45.846,-8.208,4.305)
O5': (47.259,-8.777,0.681)
O3': (47.509,-12.168,2.741)
C2: (36.229,-5.591,2.057)
OP1: (38.280,0.705,4.714)
OP2: (40.139,0.782,2.947)
C4: (35.093,-4.452,0.385)
O5': (38.874,-1.358,3.299)
C3': (40.349,-3.648,2.177)
C1': (38.595,-5.190,2.526)
O4': (38.608,-4.256,3.585)
C5': (39.704,-2.147,4.133)
P: (38.845,0.230,3.424)
O2: (36.264,-6.414,2.978)
C4': (39.867,-3.543,3.603)
C2': (39.935,-5.074,1.811)
O2': (40.783,-6.046,2.409)
N1: (37.396,-4.903,1.724)
N3: (35.093,-5.348,1.372)
N4: (33.941,-4.243,-0.260)
C6: (37.395,-3.984,0.714)
C5: (36.274,-3.735,0.025)
O3': (41.734,-3.364,2.111)
OP1: (38.280,0.705,4.714)
OP2: (40.139,0.782,2.947)
C4: (35.093,-4.452,0.385)
O5': (38.874,-1.358,3.299)
C3': (40.349,-3.648,2.177)
C1': (38.595,-5.190,2.526)
O4': (38.608,-4.256,3.585)
C5': (39.704,-2.147,4.133)
P: (38.845,0.230,3.424)
O2: (36.264,-6.414,2.978)
C4': (39.867,-3.543,3.603)
C2': (39.935,-5.074,1.811)
O2': (40.783,-6.046,2.409)
N1: (37.396,-4.903,1.724)
N3: (35.093,-5.348,1.372)
N4: (33.941,-4.243,-0.260)
C6: (37.395,-3.984,0.714)
C5: (36.274,-3.735,0.025)
O3': (41.734,-3.364,2.111)
Image (generated by PyMOL):