Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A56:A54
Extra
PDB:
ATOM 1 O3' A A 55 -11.386 35.876 12.379 1.00 24.95 O
ATOM 2 P A A 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 3 OP1 A A 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 4 OP2 A A 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 5 O5' A A 56 -10.574 37.103 14.402 1.00 26.30 O
ATOM 6 C5' A A 56 -11.375 36.445 15.370 1.00 25.35 C
ATOM 7 C4' A A 56 -10.532 35.952 16.518 1.00 21.59 C
ATOM 8 O4' A A 56 -9.679 34.868 16.061 1.00 21.13 O
ATOM 9 C3' A A 56 -9.578 36.971 17.128 1.00 24.77 C
ATOM 10 O3' A A 56 -10.208 37.786 18.110 1.00 25.35 O
ATOM 11 C2' A A 56 -8.506 36.067 17.713 1.00 22.08 C
ATOM 12 O2' A A 56 -9.050 35.446 18.865 1.00 22.16 O
ATOM 13 C1' A A 56 -8.402 34.975 16.649 1.00 20.72 C
ATOM 14 N9 A A 56 -7.434 35.266 15.569 1.00 18.11 N
ATOM 15 C8 A A 56 -7.647 35.930 14.388 1.00 22.19 C
ATOM 16 N7 A A 56 -6.589 36.002 13.600 1.00 20.75 N
ATOM 17 C5 A A 56 -5.617 35.308 14.308 1.00 21.11 C
ATOM 18 C6 A A 56 -4.266 35.015 14.030 1.00 19.54 C
ATOM 19 N6 A A 56 -3.639 35.389 12.915 1.00 19.58 N
ATOM 20 N1 A A 56 -3.572 34.320 14.957 1.00 19.35 N
ATOM 21 C2 A A 56 -4.205 33.942 16.076 1.00 19.84 C
ATOM 22 N3 A A 56 -5.473 34.153 16.448 1.00 20.03 N
ATOM 23 C4 A A 56 -6.127 34.854 15.514 1.00 19.39 C
ATOM 24 P A A 57 -9.662 39.227 18.562 1.00 26.21 P
ATOM 25 OP1 A A 57 -10.584 39.712 19.624 1.00 24.07 O
ATOM 26 OP2 A A 57 -9.453 40.032 17.335 1.00 23.16 O
ATOM 27 O5' A A 57 -8.241 38.918 19.235 1.00 21.69 O
TER
ATOM 1 O3' C B 53 -5.392 40.814 5.019 1.00 25.85 O
ATOM 2 P C B 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 3 OP1 C B 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 4 OP2 C B 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 5 O5' C B 54 -6.565 39.374 6.651 1.00 23.54 O
ATOM 6 C5' C B 54 -5.518 38.450 6.909 1.00 22.17 C
ATOM 7 C4' C B 54 -5.561 38.015 8.352 1.00 24.34 C
ATOM 8 O4' C B 54 -5.254 39.148 9.219 1.00 22.74 O
ATOM 9 C3' C B 54 -6.931 37.548 8.821 1.00 21.12 C
ATOM 10 O3' C B 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 11 C2' C B 54 -6.857 37.788 10.322 1.00 24.10 C
ATOM 12 O2' C B 54 -6.124 36.750 10.943 1.00 23.08 O
ATOM 13 C1' C B 54 -6.024 39.072 10.392 1.00 22.23 C
ATOM 14 N1 C B 54 -6.883 40.263 10.518 1.00 23.54 N
ATOM 15 C2 C B 54 -7.077 40.753 11.807 1.00 24.98 C
ATOM 16 O2 C B 54 -6.488 40.151 12.713 1.00 26.34 O
ATOM 17 N3 C B 54 -7.887 41.822 12.007 1.00 26.34 N
ATOM 18 C4 C B 54 -8.487 42.397 10.951 1.00 27.74 C
ATOM 19 N4 C B 54 -9.271 43.458 11.149 1.00 32.59 N
ATOM 20 C5 C B 54 -8.304 41.917 9.624 1.00 25.31 C
ATOM 21 C6 C B 54 -7.510 40.851 9.452 1.00 24.04 C
ATOM 22 P A B 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 23 OP1 A B 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 24 OP2 A B 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 25 O5' A B 55 -9.319 35.372 9.421 1.00 24.76 O
TER
ATOM 2 P A A 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 3 OP1 A A 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 4 OP2 A A 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 5 O5' A A 56 -10.574 37.103 14.402 1.00 26.30 O
ATOM 6 C5' A A 56 -11.375 36.445 15.370 1.00 25.35 C
ATOM 7 C4' A A 56 -10.532 35.952 16.518 1.00 21.59 C
ATOM 8 O4' A A 56 -9.679 34.868 16.061 1.00 21.13 O
ATOM 9 C3' A A 56 -9.578 36.971 17.128 1.00 24.77 C
ATOM 10 O3' A A 56 -10.208 37.786 18.110 1.00 25.35 O
ATOM 11 C2' A A 56 -8.506 36.067 17.713 1.00 22.08 C
ATOM 12 O2' A A 56 -9.050 35.446 18.865 1.00 22.16 O
ATOM 13 C1' A A 56 -8.402 34.975 16.649 1.00 20.72 C
ATOM 14 N9 A A 56 -7.434 35.266 15.569 1.00 18.11 N
ATOM 15 C8 A A 56 -7.647 35.930 14.388 1.00 22.19 C
ATOM 16 N7 A A 56 -6.589 36.002 13.600 1.00 20.75 N
ATOM 17 C5 A A 56 -5.617 35.308 14.308 1.00 21.11 C
ATOM 18 C6 A A 56 -4.266 35.015 14.030 1.00 19.54 C
ATOM 19 N6 A A 56 -3.639 35.389 12.915 1.00 19.58 N
ATOM 20 N1 A A 56 -3.572 34.320 14.957 1.00 19.35 N
ATOM 21 C2 A A 56 -4.205 33.942 16.076 1.00 19.84 C
ATOM 22 N3 A A 56 -5.473 34.153 16.448 1.00 20.03 N
ATOM 23 C4 A A 56 -6.127 34.854 15.514 1.00 19.39 C
ATOM 24 P A A 57 -9.662 39.227 18.562 1.00 26.21 P
ATOM 25 OP1 A A 57 -10.584 39.712 19.624 1.00 24.07 O
ATOM 26 OP2 A A 57 -9.453 40.032 17.335 1.00 23.16 O
ATOM 27 O5' A A 57 -8.241 38.918 19.235 1.00 21.69 O
TER
ATOM 1 O3' C B 53 -5.392 40.814 5.019 1.00 25.85 O
ATOM 2 P C B 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 3 OP1 C B 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 4 OP2 C B 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 5 O5' C B 54 -6.565 39.374 6.651 1.00 23.54 O
ATOM 6 C5' C B 54 -5.518 38.450 6.909 1.00 22.17 C
ATOM 7 C4' C B 54 -5.561 38.015 8.352 1.00 24.34 C
ATOM 8 O4' C B 54 -5.254 39.148 9.219 1.00 22.74 O
ATOM 9 C3' C B 54 -6.931 37.548 8.821 1.00 21.12 C
ATOM 10 O3' C B 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 11 C2' C B 54 -6.857 37.788 10.322 1.00 24.10 C
ATOM 12 O2' C B 54 -6.124 36.750 10.943 1.00 23.08 O
ATOM 13 C1' C B 54 -6.024 39.072 10.392 1.00 22.23 C
ATOM 14 N1 C B 54 -6.883 40.263 10.518 1.00 23.54 N
ATOM 15 C2 C B 54 -7.077 40.753 11.807 1.00 24.98 C
ATOM 16 O2 C B 54 -6.488 40.151 12.713 1.00 26.34 O
ATOM 17 N3 C B 54 -7.887 41.822 12.007 1.00 26.34 N
ATOM 18 C4 C B 54 -8.487 42.397 10.951 1.00 27.74 C
ATOM 19 N4 C B 54 -9.271 43.458 11.149 1.00 32.59 N
ATOM 20 C5 C B 54 -8.304 41.917 9.624 1.00 25.31 C
ATOM 21 C6 C B 54 -7.510 40.851 9.452 1.00 24.04 C
ATOM 22 P A B 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 23 OP1 A B 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 24 OP2 A B 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 25 O5' A B 55 -9.319 35.372 9.421 1.00 24.76 O
TER
Atoms:
OP1: (-12.438,38.022,12.992)
OP2: (-10.077,38.018,12.104)
C3': (-9.578,36.971,17.128)
C1': (-8.402,34.975,16.649)
C5': (-11.375,36.445,15.370)
O4': (-9.679,34.868,16.061)
C8: (-7.647,35.930,14.388)
O2': (-9.050,35.446,18.865)
C6: (-4.266,35.015,14.030)
C5: (-5.617,35.308,14.308)
C4: (-6.127,34.854,15.514)
P: (-11.114,37.361,12.932)
C4': (-10.532,35.952,16.518)
C2': (-8.506,36.067,17.713)
C2: (-4.205,33.942,16.076)
N1: (-3.572,34.320,14.957)
N3: (-5.473,34.153,16.448)
N6: (-3.639,35.389,12.915)
N7: (-6.589,36.002,13.600)
N9: (-7.434,35.266,15.569)
O5': (-10.574,37.103,14.402)
O3': (-10.208,37.786,18.110)
OP2: (-10.077,38.018,12.104)
C3': (-9.578,36.971,17.128)
C1': (-8.402,34.975,16.649)
C5': (-11.375,36.445,15.370)
O4': (-9.679,34.868,16.061)
C8: (-7.647,35.930,14.388)
O2': (-9.050,35.446,18.865)
C6: (-4.266,35.015,14.030)
C5: (-5.617,35.308,14.308)
C4: (-6.127,34.854,15.514)
P: (-11.114,37.361,12.932)
C4': (-10.532,35.952,16.518)
C2': (-8.506,36.067,17.713)
C2: (-4.205,33.942,16.076)
N1: (-3.572,34.320,14.957)
N3: (-5.473,34.153,16.448)
N6: (-3.639,35.389,12.915)
N7: (-6.589,36.002,13.600)
N9: (-7.434,35.266,15.569)
O5': (-10.574,37.103,14.402)
O3': (-10.208,37.786,18.110)
C2: (-7.077,40.753,11.807)
OP1: (-6.760,38.961,4.167)
OP2: (-7.934,40.933,5.288)
C4: (-8.487,42.397,10.951)
O5': (-6.565,39.374,6.651)
C3': (-6.931,37.548,8.821)
C1': (-6.024,39.072,10.392)
O4': (-5.254,39.148,9.219)
C5': (-5.518,38.450,6.909)
P: (-6.779,40.008,5.202)
O2: (-6.488,40.151,12.713)
C4': (-5.561,38.015,8.352)
C2': (-6.857,37.788,10.322)
O2': (-6.124,36.750,10.943)
N1: (-6.883,40.263,10.518)
N3: (-7.887,41.822,12.007)
N4: (-9.271,43.458,11.149)
C6: (-7.510,40.851,9.452)
C5: (-8.304,41.917,9.624)
O3': (-7.180,36.204,8.461)
OP1: (-6.760,38.961,4.167)
OP2: (-7.934,40.933,5.288)
C4: (-8.487,42.397,10.951)
O5': (-6.565,39.374,6.651)
C3': (-6.931,37.548,8.821)
C1': (-6.024,39.072,10.392)
O4': (-5.254,39.148,9.219)
C5': (-5.518,38.450,6.909)
P: (-6.779,40.008,5.202)
O2: (-6.488,40.151,12.713)
C4': (-5.561,38.015,8.352)
C2': (-6.857,37.788,10.322)
O2': (-6.124,36.750,10.943)
N1: (-6.883,40.263,10.518)
N3: (-7.887,41.822,12.007)
N4: (-9.271,43.458,11.149)
C6: (-7.510,40.851,9.452)
C5: (-8.304,41.917,9.624)
O3': (-7.180,36.204,8.461)
Image (generated by PyMOL):